Wall clock time and date at job start Sun Mar 29 2020 22:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00380 * 2 1 4 4 H 1.48493 * 109.47170 * 264.64882 * 3 2 1 5 5 H 1.48496 * 109.46743 * 24.65152 * 3 2 1 6 6 H 1.48496 * 109.47102 * 144.64968 * 3 2 1 7 7 C 1.38816 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99747 * 34.03314 * 7 2 1 9 9 N 1.36933 * 120.00125 * 214.02891 * 7 2 1 10 10 C 1.46921 * 120.63236 * 40.96400 * 9 7 2 11 11 C 1.53199 * 108.77645 * 126.41181 * 10 9 7 12 12 C 1.53038 * 109.31280 * 54.63744 * 11 10 9 13 13 C 1.53039 * 109.53587 * 298.63466 * 12 11 10 14 14 C 1.46931 * 120.63050 * 220.98676 * 9 7 2 15 15 H 1.08992 * 109.58945 * 113.66114 * 14 9 7 16 16 C 1.50699 * 109.58529 * 353.37178 * 14 9 7 17 17 C 1.39872 * 125.89412 * 116.30165 * 16 14 9 18 18 C 1.35322 * 107.91902 * 179.86368 * 17 16 14 19 19 N 1.34943 * 107.74318 * 0.39734 * 18 17 16 20 20 H 0.97002 * 126.03376 * 179.75444 * 19 18 17 21 21 N 1.30830 * 125.90139 * 296.61216 * 16 14 9 22 22 H 0.97002 * 119.99799 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.58520 * 6.62676 * 10 9 7 24 24 H 1.09002 * 109.70670 * 246.26625 * 10 9 7 25 25 H 1.08997 * 109.49362 * 174.58897 * 11 10 9 26 26 H 1.08998 * 109.49224 * 294.68175 * 11 10 9 27 27 H 1.08998 * 109.46228 * 58.65161 * 12 11 10 28 28 H 1.09000 * 109.46196 * 178.61862 * 12 11 10 29 29 H 1.09006 * 109.50032 * 301.41569 * 13 12 11 30 30 H 1.09002 * 109.49774 * 181.31761 * 13 12 11 31 31 H 1.07999 * 126.04251 * 359.97438 * 17 16 14 32 32 H 1.07997 * 126.12861 * 180.14501 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6108 1.9811 -1.3939 5 1 1.3958 2.6826 0.5840 6 1 3.4866 1.4753 0.8100 7 6 2.0102 -1.2022 0.0005 8 1 1.6088 -2.0576 -0.5226 9 7 3.2036 -1.3035 0.6642 10 6 3.3837 -0.6766 1.9807 11 6 3.8832 -1.7366 2.9675 12 6 5.1460 -2.3949 2.4069 13 6 4.8176 -3.0855 1.0812 14 6 4.3287 -2.0408 0.0731 15 1 5.1374 -1.3482 -0.1598 16 6 3.8744 -2.7296 -1.1880 17 6 4.3436 -2.4685 -2.4796 18 6 3.6938 -3.2932 -3.3332 19 7 2.8373 -4.0431 -2.6087 20 1 2.2365 -4.7204 -2.9570 21 7 2.9691 -3.6709 -1.2646 22 1 -0.4850 0.8401 0.0004 23 1 2.4316 -0.2746 2.3273 24 1 4.1152 0.1281 1.9076 25 1 4.1124 -1.2649 3.9230 26 1 3.1114 -2.4929 3.1105 27 1 5.9089 -1.6343 2.2408 28 1 5.5175 -3.1324 3.1183 29 1 4.0370 -3.8292 1.2420 30 1 5.7119 -3.5740 0.6942 31 1 5.0935 -1.7390 -2.7479 32 1 3.8326 -3.3398 -4.4032 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334283864.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:52 Heat of formation + Delta-G solvation = 74.087024 kcal Electronic energy + Delta-G solvation = -15594.750852 eV Core-core repulsion = 13170.621486 eV Total energy + Delta-G solvation = -2424.129366 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.91106 -39.15754 -34.87018 -33.63334 -32.49362 -30.67712 -30.46541 -27.11662 -24.43426 -23.87002 -22.25603 -20.83819 -20.39056 -18.92169 -18.24959 -16.98291 -16.15967 -15.50054 -15.14792 -15.00033 -14.76750 -14.35531 -14.26034 -14.24942 -14.06046 -13.36570 -12.84645 -12.66925 -12.38041 -12.15814 -11.69291 -11.53255 -11.44925 -11.22635 -11.06304 -10.46741 -10.02553 -9.44690 -8.55803 -8.16951 -5.43039 1.21876 1.39279 1.45563 1.54659 2.01498 2.27618 2.53437 3.06467 3.59751 3.92390 4.13357 4.15009 4.26012 4.36910 4.49569 4.66163 4.75802 4.86964 5.01325 5.09492 5.10514 5.16738 5.21504 5.33970 5.36993 5.41100 5.68832 5.87054 6.03152 6.43183 6.71017 7.00548 7.11329 7.74592 8.22661 9.03483 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.015110 C = 0.010497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.119007 B = 1852.686953 C = 2666.872473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.011 4.011 3 Si 0.902 3.098 4 H -0.296 1.296 5 H -0.305 1.305 6 H -0.235 1.235 7 C -0.245 4.245 8 H 0.051 0.949 9 N -0.604 5.604 10 C 0.139 3.861 11 C -0.131 4.131 12 C -0.103 4.103 13 C -0.116 4.116 14 C 0.234 3.766 15 H 0.057 0.943 16 C 0.088 3.912 17 C -0.295 4.295 18 C 0.065 3.935 19 N -0.482 5.482 20 H 0.445 0.555 21 N -0.315 5.315 22 H 0.258 0.742 23 H 0.037 0.963 24 H 0.036 0.964 25 H 0.081 0.919 26 H 0.042 0.958 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.540 -5.638 -2.316 13.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.208 4.208 3 Si 0.729 3.271 4 H -0.224 1.224 5 H -0.232 1.232 6 H -0.158 1.158 7 C -0.375 4.375 8 H 0.068 0.932 9 N -0.329 5.329 10 C 0.014 3.986 11 C -0.170 4.170 12 C -0.141 4.141 13 C -0.155 4.155 14 C 0.128 3.872 15 H 0.075 0.925 16 C -0.079 4.079 17 C -0.325 4.325 18 C -0.082 4.082 19 N -0.191 5.191 20 H 0.290 0.710 21 N -0.139 5.139 22 H 0.067 0.933 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.173 0.827 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 11.600 -6.282 -1.670 13.297 hybrid contribution -0.276 1.223 -0.965 1.582 sum 11.324 -5.060 -2.635 12.680 Atomic orbital electron populations 1.70183 1.08017 1.27111 1.53019 1.26109 0.95230 1.00536 0.98910 0.86408 0.81078 0.81479 0.78112 1.22361 1.23231 1.15814 1.18746 0.95074 0.94528 1.29153 0.93156 1.44379 1.10216 1.62143 1.16199 1.21369 0.98242 0.94308 0.84636 1.21965 0.97881 0.98621 0.98541 1.21396 0.96859 0.99868 0.95966 1.21858 1.00196 0.97420 0.96035 1.19283 0.89280 0.91436 0.87219 0.92517 1.22303 0.94206 0.94680 0.96688 1.21718 1.10587 1.08431 0.91766 1.23101 0.91900 0.93337 0.99873 1.46433 1.34037 1.33563 1.05098 0.70974 1.77298 1.20455 1.19600 0.96560 0.93268 0.94401 0.94643 0.90086 0.93957 0.91012 0.90335 0.93924 0.90543 0.82687 0.76450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.69 13.97 21.65 0.30 -60.38 16 2 C -0.01 -0.66 4.84 84.86 0.41 -0.25 16 3 Si 0.90 46.05 27.34 68.60 1.88 47.93 16 4 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 5 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 6 H -0.23 -10.89 5.14 99.48 0.51 -10.37 16 7 C -0.25 -14.35 8.70 84.04 0.73 -13.62 16 8 H 0.05 3.30 6.14 -2.91 -0.02 3.28 16 9 N -0.60 -29.40 2.47 -679.35 -1.68 -31.08 16 10 C 0.14 6.04 4.56 86.37 0.39 6.43 16 11 C -0.13 -4.54 6.08 30.67 0.19 -4.35 16 12 C -0.10 -3.04 5.88 30.62 0.18 -2.86 16 13 C -0.12 -3.98 5.35 30.67 0.16 -3.81 16 14 C 0.23 9.60 3.38 44.23 0.15 9.75 16 15 H 0.06 2.18 8.12 -2.39 -0.02 2.16 16 16 C 0.09 3.67 4.64 43.10 0.20 3.87 16 17 C -0.30 -10.20 10.72 21.99 0.24 -9.96 16 18 C 0.07 1.84 11.99 83.54 1.00 2.84 16 19 N -0.48 -15.68 7.36 -57.59 -0.42 -16.11 16 20 H 0.45 11.11 8.96 -213.32 -1.91 9.20 16 21 N -0.32 -13.62 11.08 -47.39 -0.53 -14.15 16 22 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 23 H 0.04 1.83 6.97 -2.38 -0.02 1.81 16 24 H 0.04 1.47 6.65 -2.39 -0.02 1.45 16 25 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 29 H 0.04 1.67 8.10 -2.38 -0.02 1.66 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.16 4.62 8.06 -2.91 -0.02 4.60 16 32 H 0.22 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -75.19 257.79 2.21 -72.98 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -0.99 Total: 12.77 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 3.65 Total: -11.95 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -2.33 Total: -121.71 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.88 Total: 47.93 kcal Total: -75.19 2.21 -72.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334283864.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.064 kcal (2) G-P(sol) polarization free energy of solvation -75.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds