Wall clock time and date at job start Sun Mar 29 2020 22:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 120.00390 * 2 1 4 4 H 1.48500 * 109.47110 * 272.11225 * 3 2 1 5 5 H 1.48499 * 109.46667 * 32.11080 * 3 2 1 6 6 H 1.48494 * 109.47034 * 152.11196 * 3 2 1 7 7 C 1.38810 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00173 * 340.93565 * 7 2 1 9 9 N 1.36938 * 119.99949 * 160.93187 * 7 2 1 10 10 C 1.46955 * 120.65480 * 330.63864 * 9 7 2 11 11 C 1.53191 * 108.88972 * 233.53460 * 10 9 7 12 12 C 1.53046 * 109.31361 * 305.44213 * 11 10 9 13 13 C 1.53039 * 109.53385 * 61.36258 * 12 11 10 14 14 C 1.46929 * 120.63082 * 150.82168 * 9 7 2 15 15 H 1.08998 * 109.58480 * 246.32245 * 14 9 7 16 16 C 1.50704 * 109.58476 * 6.60096 * 14 9 7 17 17 C 1.39863 * 125.90194 * 244.71552 * 16 14 9 18 18 C 1.35321 * 107.92078 * 179.76083 * 17 16 14 19 19 N 1.34949 * 107.74314 * 0.42609 * 18 17 16 20 20 H 0.96999 * 126.03146 * 179.83556 * 19 18 17 21 21 N 1.30836 * 125.89638 * 64.74699 * 16 14 9 22 22 H 0.97000 * 119.99373 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.46718 * 113.75368 * 10 9 7 24 24 H 1.09000 * 109.71377 * 353.46563 * 10 9 7 25 25 H 1.09000 * 109.49982 * 185.49719 * 11 10 9 26 26 H 1.09000 * 109.52692 * 65.40827 * 11 10 9 27 27 H 1.08998 * 109.45781 * 301.34498 * 12 11 10 28 28 H 1.09000 * 109.45127 * 181.37405 * 12 11 10 29 29 H 1.09001 * 109.49470 * 178.68034 * 13 12 11 30 30 H 1.09004 * 109.50084 * 58.59253 * 13 12 11 31 31 H 1.08002 * 126.03909 * 0.02562 * 17 16 14 32 32 H 1.08002 * 126.12826 * 180.26458 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4532 2.0722 -1.3991 5 1 1.4708 2.6393 0.7442 6 1 3.5694 1.4276 0.6549 7 6 2.0102 -1.2022 -0.0005 8 1 1.5146 -2.1119 0.3045 9 7 3.3232 -1.2346 -0.3880 10 6 3.8401 -0.2666 -1.3653 11 6 4.5213 -1.0291 -2.5061 12 6 5.5842 -1.9649 -1.9256 13 6 4.9182 -2.9812 -0.9952 14 6 4.2416 -2.2407 0.1626 15 1 4.9983 -1.7490 0.7739 16 6 3.4692 -3.2214 1.0069 17 6 3.6101 -3.4052 2.3863 18 6 2.7397 -4.3680 2.7691 19 7 2.0785 -4.7855 1.6693 20 1 1.3937 -5.4720 1.6415 21 7 2.5514 -4.0483 0.5761 22 1 -0.4849 0.8401 -0.0004 23 1 4.5641 0.3882 -0.8801 24 1 3.0183 0.3287 -1.7633 25 1 4.9932 -0.3205 -3.1867 26 1 3.7782 -1.6143 -3.0479 27 1 6.3136 -1.3816 -1.3637 28 1 6.0871 -2.4907 -2.7372 29 1 5.6725 -3.6619 -0.6005 30 1 4.1710 -3.5480 -1.5507 31 1 4.2901 -2.8699 3.0324 32 1 2.6011 -4.7381 3.7742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334283865.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:56 Heat of formation + Delta-G solvation = 100.057783 kcal Electronic energy + Delta-G solvation = -15604.426107 eV Core-core repulsion = 13181.422918 eV Total energy + Delta-G solvation = -2423.003189 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.55855 -37.64675 -32.96094 -32.19387 -30.55745 -29.34112 -29.02993 -25.23784 -22.99619 -22.18716 -20.94608 -19.47390 -18.65802 -17.59466 -16.34622 -15.32658 -14.46127 -13.87486 -13.60499 -13.58939 -13.12894 -12.96037 -12.91112 -12.72616 -12.11140 -11.64791 -11.28442 -10.81593 -10.54505 -10.39464 -10.10362 -10.00096 -9.79628 -9.60527 -9.29728 -8.63034 -8.41063 -8.10880 -6.81243 -5.78549 -3.16023 2.52771 3.39801 3.44417 3.50199 3.56708 3.60191 4.66497 5.07638 5.26615 5.39160 5.44028 5.54146 5.62020 5.68348 5.89163 6.14018 6.16713 6.27013 6.32564 6.43129 6.48708 6.52423 6.58433 6.70554 6.81417 6.86159 7.11807 7.26305 7.86199 8.12738 8.40231 8.54429 9.12008 9.88154 10.23280 11.37536 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023022 B = 0.014369 C = 0.010129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.953498 B = 1948.235185 C = 2763.774628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.020 3.980 3 Si 0.879 3.121 4 H -0.290 1.290 5 H -0.306 1.306 6 H -0.270 1.270 7 C -0.248 4.248 8 H 0.099 0.901 9 N -0.598 5.598 10 C 0.128 3.872 11 C -0.137 4.137 12 C -0.109 4.109 13 C -0.126 4.126 14 C 0.251 3.749 15 H 0.048 0.952 16 C 0.110 3.890 17 C -0.263 4.263 18 C 0.042 3.958 19 N -0.486 5.486 20 H 0.432 0.568 21 N -0.264 5.264 22 H 0.259 0.741 23 H 0.025 0.975 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.139 0.861 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.414 -7.003 2.144 11.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.177 4.177 3 Si 0.710 3.290 4 H -0.218 1.218 5 H -0.235 1.235 6 H -0.196 1.196 7 C -0.377 4.377 8 H 0.116 0.884 9 N -0.323 5.323 10 C 0.002 3.998 11 C -0.176 4.176 12 C -0.147 4.147 13 C -0.166 4.166 14 C 0.143 3.857 15 H 0.065 0.935 16 C -0.058 4.058 17 C -0.293 4.293 18 C -0.105 4.105 19 N -0.194 5.194 20 H 0.274 0.726 21 N -0.087 5.087 22 H 0.069 0.931 23 H 0.042 0.958 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.157 0.843 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.622 -7.322 1.178 11.372 hybrid contribution 0.335 1.039 0.878 1.401 sum 8.957 -6.282 2.056 11.132 Atomic orbital electron populations 1.69831 1.05701 1.26090 1.54307 1.25308 0.95186 0.97282 0.99956 0.86994 0.80048 0.85036 0.76920 1.21779 1.23493 1.19553 1.19193 0.84006 0.95018 1.39444 0.88377 1.44325 1.07789 1.34356 1.45812 1.21363 0.97101 0.91877 0.89410 1.22024 0.98174 0.98743 0.98641 1.21399 0.97549 0.97417 0.98332 1.21983 0.99362 0.97637 0.97617 1.18899 0.89693 0.86541 0.90530 0.93470 1.22076 0.94872 0.95458 0.93397 1.21344 1.07439 1.05074 0.95433 1.22348 0.96057 0.99119 0.93002 1.46385 1.33996 1.33341 1.05634 0.72577 1.77423 1.13791 1.09213 1.08300 0.93101 0.95755 0.90938 0.92988 0.91743 0.92673 0.93043 0.92811 0.91216 0.84271 0.81619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.20 13.97 55.49 0.78 -28.42 16 2 C 0.02 0.61 5.25 -17.43 -0.09 0.52 16 3 Si 0.88 23.10 24.34 -169.99 -4.14 18.96 16 4 H -0.29 -7.35 6.62 56.52 0.37 -6.98 16 5 H -0.31 -8.22 7.11 56.52 0.40 -7.81 16 6 H -0.27 -6.92 6.63 56.52 0.37 -6.55 16 7 C -0.25 -7.20 9.27 -15.06 -0.14 -7.34 16 8 H 0.10 3.07 5.83 -52.49 -0.31 2.77 16 9 N -0.60 -14.78 2.75 -166.06 -0.46 -15.23 16 10 C 0.13 2.88 4.19 -3.70 -0.02 2.87 16 11 C -0.14 -2.53 6.08 -26.61 -0.16 -2.69 16 12 C -0.11 -1.78 5.88 -26.69 -0.16 -1.94 16 13 C -0.13 -2.27 5.34 -26.61 -0.14 -2.41 16 14 C 0.25 5.27 3.38 -68.75 -0.23 5.04 16 15 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 16 C 0.11 2.30 4.50 -82.41 -0.37 1.93 16 17 C -0.26 -4.72 10.72 -40.01 -0.43 -5.15 16 18 C 0.04 0.64 11.99 -17.22 -0.21 0.43 16 19 N -0.49 -8.13 7.36 30.45 0.22 -7.91 16 20 H 0.43 5.60 8.96 -182.61 -1.64 3.97 16 21 N -0.26 -5.65 11.14 33.67 0.38 -5.27 16 22 H 0.26 7.86 8.31 -40.82 -0.34 7.53 16 23 H 0.02 0.54 7.02 -51.93 -0.36 0.17 16 24 H 0.07 1.79 4.64 -51.93 -0.24 1.55 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.38 8.08 -51.93 -0.42 0.96 16 31 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 32 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 254.34 15.07 3.83 3.83 Total: -1.00 -34.30 254.34 -6.87 -41.18 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.54 Total: 1.60 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.95 Total: -8.74 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.92 Total: -56.84 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.14 Total: 18.96 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -34.30 -6.87 -41.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334283865.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.233 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds