Wall clock time and date at job start Sun Mar 29 2020 22:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48509 * 109.47304 * 240.00099 * 3 2 1 5 5 H 1.48501 * 109.47440 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47535 * 120.00035 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00171 * 163.17892 * 7 2 1 9 9 N 1.36940 * 120.00078 * 343.17980 * 7 2 1 10 10 C 1.46925 * 120.62821 * 151.92771 * 9 7 2 11 11 C 1.53192 * 108.89163 * 126.46045 * 10 9 7 12 12 C 1.53039 * 109.31624 * 54.56131 * 11 10 9 13 13 N 1.46495 * 109.46476 * 178.61195 * 12 11 10 14 14 C 1.36876 * 126.40056 * 239.99832 * 13 12 11 15 15 C 1.34669 * 106.82100 * 180.02562 * 14 13 12 16 16 N 1.34125 * 108.01574 * 359.97438 * 15 14 13 17 17 C 1.30497 * 109.26180 * 359.72937 * 16 15 14 18 18 C 1.53044 * 109.53788 * 298.63849 * 12 11 10 19 19 C 1.46954 * 120.65206 * 331.73898 * 9 7 2 20 20 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.59026 * 6.59854 * 10 9 7 22 22 H 1.09002 * 109.58140 * 246.31504 * 10 9 7 23 23 H 1.09005 * 109.49706 * 174.50895 * 11 10 9 24 24 H 1.08990 * 109.50129 * 294.57435 * 11 10 9 25 25 H 1.09004 * 109.46275 * 58.65252 * 12 11 10 26 26 H 1.08010 * 126.59002 * 359.96574 * 14 13 12 27 27 H 1.08001 * 125.99292 * 180.02562 * 15 14 13 28 28 H 1.07997 * 125.65256 * 180.29374 * 17 16 15 29 29 H 1.09000 * 109.50000 * 181.31601 * 18 12 11 30 30 H 1.09010 * 109.49012 * 301.37841 * 18 12 11 31 31 H 1.09000 * 109.47125 * 113.75280 * 19 9 7 32 32 H 1.09000 * 109.71403 * 353.46652 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2221 -0.2712 9 7 1.3694 -2.3629 0.3421 10 6 1.8154 -3.6528 -0.2018 11 6 2.0654 -4.6207 0.9590 12 6 0.8079 -4.7058 1.8270 13 7 1.0320 -5.6559 2.9193 14 6 0.3161 -6.7967 3.1633 15 6 0.8541 -7.3678 4.2579 16 7 1.8712 -6.5969 4.6706 17 6 1.9876 -5.5729 3.8701 18 6 0.4929 -3.3255 2.4083 19 6 0.2251 -2.3429 1.2640 20 1 -0.4849 0.8401 0.0004 21 1 2.7376 -3.5124 -0.7656 22 1 1.0448 -4.0591 -0.8569 23 1 2.3024 -5.6088 0.5642 24 1 2.8995 -4.2597 1.5605 25 1 -0.0312 -5.0436 1.2187 26 1 -0.5202 -7.1672 2.5890 27 1 0.5249 -8.2860 4.7215 28 1 2.7241 -4.7876 3.9555 29 1 -0.3893 -3.3916 3.0451 30 1 1.3413 -2.9766 2.9971 31 1 -0.6770 -2.6412 0.7298 32 1 0.0955 -1.3387 1.6675 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334677499.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:54 Heat of formation + Delta-G solvation = 79.213361 kcal Electronic energy + Delta-G solvation = -15150.458709 eV Core-core repulsion = 12726.551638 eV Total energy + Delta-G solvation = -2423.907071 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.81186 -37.71936 -34.15241 -31.86432 -30.28086 -29.63635 -28.86913 -25.24071 -22.78682 -22.41736 -21.18326 -20.61440 -19.05548 -17.32202 -16.56981 -15.02307 -14.78539 -14.29001 -14.00789 -13.75267 -13.59067 -13.28938 -13.12093 -12.75461 -12.50600 -11.68760 -11.25784 -11.09958 -10.81421 -10.63434 -10.45556 -10.28355 -9.93943 -9.81195 -9.72623 -9.16326 -8.58878 -8.27068 -6.84950 -5.91977 -3.35540 2.35261 3.10986 3.32304 3.38437 3.39422 3.41104 4.39407 4.85991 4.95976 5.09477 5.21046 5.24593 5.35773 5.44337 5.61248 5.79979 5.87457 6.00347 6.17097 6.20583 6.29742 6.39294 6.55409 6.62419 6.75045 6.98819 7.12989 7.45256 7.49614 7.68144 8.31025 8.32766 9.07002 9.69529 10.24973 11.17265 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.056300 B = 0.006761 C = 0.006714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.219571 B = 4140.418165 C = 4169.502173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.005 3.995 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.148 3.852 11 C -0.139 4.139 12 C 0.138 3.862 13 N -0.445 5.445 14 C -0.061 4.061 15 C -0.041 4.041 16 N -0.507 5.507 17 C 0.185 3.815 18 C -0.147 4.147 19 C 0.174 3.826 20 H 0.256 0.744 21 H 0.062 0.938 22 H 0.021 0.979 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.168 0.832 27 H 0.163 0.837 28 H 0.198 0.802 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.022 0.978 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.250 -9.157 3.259 9.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.388 4.388 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.021 3.979 11 C -0.179 4.179 12 C 0.036 3.964 13 N -0.126 5.126 14 C -0.196 4.196 15 C -0.190 4.190 16 N -0.225 5.225 17 C -0.098 4.098 18 C -0.187 4.187 19 C 0.047 3.953 20 H 0.066 0.934 21 H 0.081 0.919 22 H 0.039 0.961 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.110 0.890 26 H 0.185 0.815 27 H 0.181 0.819 28 H 0.215 0.785 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.601 -9.031 3.786 9.811 hybrid contribution -0.211 0.956 -0.710 1.209 sum 0.390 -8.075 3.076 8.650 Atomic orbital electron populations 1.70000 1.05333 1.25918 1.53426 1.25067 0.95314 0.98573 1.00413 0.86339 0.78936 0.83063 0.78247 1.20757 1.21541 1.20896 1.19140 0.92616 0.84620 1.42437 0.91519 1.44085 1.35775 1.01662 1.49904 1.20864 0.98361 0.86530 0.92135 1.22440 0.96222 1.00225 0.99059 1.21665 0.99805 0.88875 0.86068 1.46084 1.24448 1.18820 1.23223 1.22731 1.02686 0.91104 1.03031 1.22199 0.97470 1.01861 0.97461 1.70263 1.19771 1.04905 1.27604 1.24810 0.96128 1.00256 0.88569 1.22646 1.01251 0.93817 1.00964 1.20784 0.88895 0.98084 0.87507 0.93381 0.91927 0.96065 0.92342 0.91372 0.88961 0.81479 0.81945 0.78510 0.92472 0.91700 0.95952 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.16 11.20 55.49 0.62 -24.54 16 2 C 0.01 0.14 4.92 -17.43 -0.09 0.06 16 3 Si 0.90 20.94 29.59 -169.99 -5.03 15.91 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.75 9.58 -15.06 -0.14 -6.90 16 8 H 0.07 1.71 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -13.84 3.00 -172.30 -0.52 -14.36 16 10 C 0.15 2.85 6.51 -3.71 -0.02 2.82 16 11 C -0.14 -2.24 5.39 -26.61 -0.14 -2.38 16 12 C 0.14 2.17 2.82 -67.89 -0.19 1.97 16 13 N -0.45 -6.76 2.62 -111.41 -0.29 -7.05 16 14 C -0.06 -0.85 11.54 -16.56 -0.19 -1.04 16 15 C -0.04 -0.60 11.87 -17.81 -0.21 -0.81 16 16 N -0.51 -8.52 11.25 -14.67 -0.16 -8.68 16 17 C 0.19 2.92 11.61 -90.37 -1.05 1.87 16 18 C -0.15 -2.61 5.40 -26.61 -0.14 -2.75 16 19 C 0.17 3.84 5.30 -3.70 -0.02 3.82 16 20 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 21 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 22 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.07 1.12 7.98 -51.93 -0.41 0.71 16 25 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 26 H 0.17 1.83 8.06 -52.48 -0.42 1.40 16 27 H 0.16 1.90 8.06 -52.49 -0.42 1.47 16 28 H 0.20 2.75 8.06 -52.49 -0.42 2.32 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 1.18 7.99 -51.92 -0.42 0.77 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 LS Contribution 264.92 15.07 3.99 3.99 Total: -1.00 -29.04 264.92 -8.08 -37.11 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -4.48 Total: 0.94 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -2.20 Total: -3.33 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.35 Total: -54.63 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.04 -8.08 -37.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334677499.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.328 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds