Wall clock time and date at job start Sun Mar 29 2020 22:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48509 * 109.47304 * 240.00099 * 3 2 1 5 5 H 1.48501 * 109.47440 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47535 * 120.00035 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00171 * 163.17892 * 7 2 1 9 9 N 1.36940 * 120.00078 * 343.17980 * 7 2 1 10 10 C 1.46925 * 120.62821 * 151.92771 * 9 7 2 11 11 C 1.53192 * 108.89163 * 126.46045 * 10 9 7 12 12 C 1.53039 * 109.31624 * 54.56131 * 11 10 9 13 13 N 1.46495 * 109.46476 * 178.61195 * 12 11 10 14 14 C 1.36876 * 126.40056 * 239.99832 * 13 12 11 15 15 C 1.34669 * 106.82100 * 180.02562 * 14 13 12 16 16 N 1.34125 * 108.01574 * 359.97438 * 15 14 13 17 17 C 1.30497 * 109.26180 * 359.72937 * 16 15 14 18 18 C 1.53044 * 109.53788 * 298.63849 * 12 11 10 19 19 C 1.46954 * 120.65206 * 331.73898 * 9 7 2 20 20 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.59026 * 6.59854 * 10 9 7 22 22 H 1.09002 * 109.58140 * 246.31504 * 10 9 7 23 23 H 1.09005 * 109.49706 * 174.50895 * 11 10 9 24 24 H 1.08990 * 109.50129 * 294.57435 * 11 10 9 25 25 H 1.09004 * 109.46275 * 58.65252 * 12 11 10 26 26 H 1.08010 * 126.59002 * 359.96574 * 14 13 12 27 27 H 1.08001 * 125.99292 * 180.02562 * 15 14 13 28 28 H 1.07997 * 125.65256 * 180.29374 * 17 16 15 29 29 H 1.09000 * 109.50000 * 181.31601 * 18 12 11 30 30 H 1.09010 * 109.49012 * 301.37841 * 18 12 11 31 31 H 1.09000 * 109.47125 * 113.75280 * 19 9 7 32 32 H 1.09000 * 109.71403 * 353.46652 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2221 -0.2712 9 7 1.3694 -2.3629 0.3421 10 6 1.8154 -3.6528 -0.2018 11 6 2.0654 -4.6207 0.9590 12 6 0.8079 -4.7058 1.8270 13 7 1.0320 -5.6559 2.9193 14 6 0.3161 -6.7967 3.1633 15 6 0.8541 -7.3678 4.2579 16 7 1.8712 -6.5969 4.6706 17 6 1.9876 -5.5729 3.8701 18 6 0.4929 -3.3255 2.4083 19 6 0.2251 -2.3429 1.2640 20 1 -0.4849 0.8401 0.0004 21 1 2.7376 -3.5124 -0.7656 22 1 1.0448 -4.0591 -0.8569 23 1 2.3024 -5.6088 0.5642 24 1 2.8995 -4.2597 1.5605 25 1 -0.0312 -5.0436 1.2187 26 1 -0.5202 -7.1672 2.5890 27 1 0.5249 -8.2860 4.7215 28 1 2.7241 -4.7876 3.9555 29 1 -0.3893 -3.3916 3.0451 30 1 1.3413 -2.9766 2.9971 31 1 -0.6770 -2.6412 0.7298 32 1 0.0955 -1.3387 1.6675 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334677499.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:53 Heat of formation + Delta-G solvation = 63.753873 kcal Electronic energy + Delta-G solvation = -15151.129083 eV Core-core repulsion = 12726.551638 eV Total energy + Delta-G solvation = -2424.577445 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.96989 -39.25170 -35.74992 -33.54256 -31.81472 -31.13552 -30.09001 -26.99658 -24.32384 -23.95858 -22.43438 -21.86544 -20.51388 -18.89404 -18.07604 -16.83111 -16.06536 -15.73027 -15.42581 -15.38291 -14.90750 -14.68291 -14.33774 -14.25297 -14.02165 -13.24322 -13.01418 -12.70119 -12.60370 -12.25174 -12.10563 -11.95061 -11.63558 -11.44494 -10.90900 -10.61630 -10.38492 -9.38015 -8.74569 -7.91525 -5.36442 1.22296 1.47721 1.49998 1.56220 1.91459 2.26909 2.49948 3.25736 3.56440 3.62343 3.86456 3.89622 4.02265 4.12833 4.34726 4.54979 4.58204 4.67457 4.78310 4.84964 4.89565 4.93022 5.05130 5.22634 5.36746 5.49513 5.62140 5.68057 5.91228 6.31317 6.36563 7.11699 7.19109 7.81301 8.31774 9.15644 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.056300 B = 0.006761 C = 0.006714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.219571 B = 4140.418165 C = 4169.502173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.046 4.046 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.265 4.265 8 H 0.068 0.932 9 N -0.610 5.610 10 C 0.146 3.854 11 C -0.125 4.125 12 C 0.150 3.850 13 N -0.447 5.447 14 C -0.056 4.056 15 C -0.055 4.055 16 N -0.534 5.534 17 C 0.172 3.828 18 C -0.131 4.131 19 C 0.181 3.819 20 H 0.251 0.749 21 H 0.063 0.937 22 H 0.025 0.975 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.104 0.896 26 H 0.199 0.801 27 H 0.187 0.813 28 H 0.207 0.793 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.007 0.993 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 -10.544 3.420 11.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.242 4.242 3 Si 0.792 3.208 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.395 4.395 8 H 0.086 0.914 9 N -0.334 5.334 10 C 0.020 3.980 11 C -0.165 4.165 12 C 0.047 3.953 13 N -0.128 5.128 14 C -0.190 4.190 15 C -0.202 4.202 16 N -0.253 5.253 17 C -0.110 4.110 18 C -0.171 4.171 19 C 0.055 3.945 20 H 0.060 0.940 21 H 0.081 0.919 22 H 0.043 0.957 23 H 0.100 0.900 24 H 0.082 0.918 25 H 0.122 0.878 26 H 0.216 0.784 27 H 0.204 0.796 28 H 0.224 0.776 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.025 0.975 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.974 -10.459 3.957 11.225 hybrid contribution -0.325 1.307 -0.760 1.547 sum 0.650 -9.152 3.197 9.716 Atomic orbital electron populations 1.70141 1.06592 1.26058 1.55150 1.25753 0.95993 1.01403 1.01018 0.85397 0.77638 0.79410 0.78342 1.20086 1.22126 1.20522 1.19462 0.92900 0.85887 1.41283 0.91410 1.44327 1.35856 1.02476 1.50715 1.20993 0.98268 0.85353 0.93431 1.22238 0.96204 1.00305 0.97734 1.21417 0.99996 0.87788 0.86061 1.45987 1.24745 1.19144 1.22955 1.23269 1.02797 0.90099 1.02837 1.22694 0.97032 1.02611 0.97876 1.70260 1.20984 1.05708 1.28379 1.25061 0.96667 1.00546 0.88771 1.22361 1.01448 0.94147 0.99149 1.20533 0.88215 0.97366 0.88400 0.93994 0.91886 0.95684 0.89990 0.91761 0.87778 0.78403 0.79586 0.77648 0.91517 0.92256 0.97471 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.14 11.20 21.65 0.24 -52.90 16 2 C -0.05 -2.46 4.92 84.86 0.42 -2.05 16 3 Si 0.96 43.39 29.59 68.60 2.03 45.42 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.27 -13.87 9.58 84.03 0.81 -13.06 16 8 H 0.07 3.45 7.88 -2.91 -0.02 3.43 16 9 N -0.61 -28.43 3.00 -699.03 -2.10 -30.53 16 10 C 0.15 5.38 6.51 86.36 0.56 5.94 16 11 C -0.13 -3.70 5.39 30.67 0.17 -3.54 16 12 C 0.15 4.33 2.82 45.02 0.13 4.46 16 13 N -0.45 -12.32 2.62 -506.40 -1.32 -13.65 16 14 C -0.06 -1.37 11.54 83.09 0.96 -0.41 16 15 C -0.05 -1.44 11.87 83.52 0.99 -0.45 16 16 N -0.53 -16.90 11.25 -200.31 -2.25 -19.15 16 17 C 0.17 5.08 11.61 180.26 2.09 7.17 16 18 C -0.13 -4.51 5.40 30.67 0.17 -4.34 16 19 C 0.18 8.07 5.30 86.36 0.46 8.53 16 20 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 21 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 22 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 24 H 0.06 1.98 7.98 -2.39 -0.02 1.96 16 25 H 0.10 2.84 8.08 -2.38 -0.02 2.82 16 26 H 0.20 3.44 8.06 -2.91 -0.02 3.42 16 27 H 0.19 3.77 8.06 -2.91 -0.02 3.75 16 28 H 0.21 5.44 8.06 -2.91 -0.02 5.41 16 29 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.06 2.11 7.99 -2.38 -0.02 2.09 16 31 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 Total: -1.00 -61.77 264.92 4.43 -57.34 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 1.09 Total: 11.22 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 6.74 Total: 2.25 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -5.43 Total: -116.23 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -61.77 4.43 -57.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334677499.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.095 kcal (2) G-P(sol) polarization free energy of solvation -61.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds