Wall clock time and date at job start Sun Mar 29 2020 22:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99916 * 2 1 4 4 H 1.48497 * 109.47263 * 272.94548 * 3 2 1 5 5 H 1.48498 * 109.46916 * 32.94498 * 3 2 1 6 6 H 1.48499 * 109.46826 * 152.94492 * 3 2 1 7 7 C 1.38808 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00404 * 339.35912 * 7 2 1 9 9 N 1.36939 * 120.00277 * 159.36607 * 7 2 1 10 10 C 1.46918 * 120.63521 * 152.62601 * 9 7 2 11 11 C 1.53192 * 108.77900 * 126.36666 * 10 9 7 12 12 C 1.53041 * 109.30881 * 54.63611 * 11 10 9 13 13 C 1.53038 * 109.54055 * 298.63562 * 12 11 10 14 14 H 1.09003 * 109.49667 * 301.38113 * 13 12 11 15 15 N 1.46502 * 109.49938 * 181.31901 * 13 12 11 16 16 C 1.34945 * 126.03373 * 275.02100 * 15 13 12 17 17 C 1.35322 * 107.74259 * 179.74867 * 16 15 13 18 18 C 1.39863 * 107.91899 * 0.40051 * 17 16 15 19 19 N 1.30836 * 108.20614 * 359.59777 * 18 17 16 20 20 C 1.46926 * 120.62722 * 332.60145 * 9 7 2 21 21 H 0.97001 * 120.00422 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.58659 * 6.58222 * 10 9 7 23 23 H 1.09005 * 109.70427 * 246.22732 * 10 9 7 24 24 H 1.08999 * 109.49693 * 294.68815 * 11 10 9 25 25 H 1.09005 * 109.52644 * 174.60223 * 11 10 9 26 26 H 1.09002 * 109.46277 * 178.61517 * 12 11 10 27 27 H 1.08998 * 109.46197 * 58.65572 * 12 11 10 28 28 H 1.07994 * 126.13149 * 0.02562 * 16 15 13 29 29 H 1.08003 * 126.04031 * 180.26985 * 17 16 15 30 30 H 1.08003 * 125.89967 * 179.85972 * 18 17 16 31 31 H 1.08997 * 109.58780 * 113.84180 * 20 9 7 32 32 H 1.09003 * 109.58945 * 353.41911 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4354 2.0824 -1.3982 5 1 1.4801 2.6338 0.7614 6 1 3.5775 1.4230 0.6368 7 6 2.0102 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3288 9 7 3.3137 -1.2400 -0.4185 10 6 4.2349 -2.2632 0.0944 11 6 4.8746 -2.9904 -1.0926 12 6 5.5284 -1.9649 -2.0216 13 6 4.4619 -1.0079 -2.5591 14 1 3.6993 -1.5756 -3.0923 15 7 5.0837 -0.0462 -3.4728 16 6 5.6893 1.1068 -3.1198 17 6 6.1349 1.7016 -4.2507 18 6 5.7816 0.8885 -5.3324 19 7 5.1543 -0.1612 -4.8671 20 6 3.8176 -0.2584 -1.3887 21 1 -0.4851 0.8400 0.0004 22 1 3.6838 -2.9773 0.7064 23 1 5.0119 -1.7904 0.6951 24 1 4.1077 -3.5394 -1.6390 25 1 5.6308 -3.6862 -0.7290 26 1 6.0056 -2.4815 -2.8543 27 1 6.2779 -1.3993 -1.4680 28 1 5.8025 1.4849 -2.1145 29 1 6.6673 2.6396 -4.3080 30 1 5.9940 1.0900 -6.3720 31 1 4.5603 0.3801 -0.9105 32 1 2.9911 0.3504 -1.7554 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334677558.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:34 Heat of formation + Delta-G solvation = 102.559516 kcal Electronic energy + Delta-G solvation = -15429.595190 eV Core-core repulsion = 13006.700485 eV Total energy + Delta-G solvation = -2422.894706 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.91881 -37.93294 -33.65963 -32.34984 -30.88813 -29.76441 -28.52798 -25.46051 -23.38590 -22.42362 -20.84999 -20.31450 -19.27966 -17.17897 -16.70440 -15.40704 -14.71059 -14.40219 -14.34334 -13.86326 -13.53309 -13.14652 -12.91277 -12.50632 -12.40343 -12.29014 -11.73951 -11.11328 -10.92350 -10.74211 -10.49133 -10.31606 -10.14279 -10.03594 -9.62352 -9.11786 -8.75758 -8.29755 -7.16989 -6.08264 -3.46645 2.22384 2.80450 3.10573 3.22838 3.37271 3.39894 4.40179 4.79707 4.86218 5.07159 5.12186 5.17225 5.33851 5.40095 5.48989 5.69321 5.84234 5.91274 5.98095 6.11862 6.14988 6.24028 6.30521 6.36365 6.38447 6.53349 6.75438 6.93605 7.34989 7.79308 8.02742 8.19985 8.76725 9.56196 9.90704 11.06971 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026694 B = 0.011720 C = 0.009171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.691371 B = 2388.491917 C = 3052.245933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.028 3.972 3 Si 0.876 3.124 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.268 4.268 8 H 0.091 0.909 9 N -0.596 5.596 10 C 0.144 3.856 11 C -0.133 4.133 12 C -0.118 4.118 13 C 0.138 3.862 14 H 0.104 0.896 15 N -0.352 5.352 16 C 0.056 3.944 17 C -0.286 4.286 18 C 0.033 3.967 19 N -0.301 5.301 20 C 0.123 3.877 21 H 0.265 0.735 22 H 0.069 0.931 23 H 0.027 0.973 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.168 0.832 29 H 0.142 0.858 30 H 0.178 0.822 31 H 0.033 0.967 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.410 0.176 -4.632 13.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.172 4.172 3 Si 0.705 3.295 4 H -0.214 1.214 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.396 4.396 8 H 0.108 0.892 9 N -0.320 5.320 10 C 0.018 3.982 11 C -0.172 4.172 12 C -0.157 4.157 13 C 0.034 3.966 14 H 0.122 0.878 15 N -0.134 5.134 16 C -0.091 4.091 17 C -0.316 4.316 18 C -0.152 4.152 19 N -0.123 5.123 20 C -0.004 4.004 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.185 0.815 29 H 0.160 0.840 30 H 0.195 0.805 31 H 0.051 0.949 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.561 -0.954 -4.786 12.548 hybrid contribution 0.830 1.898 0.134 2.076 sum 12.391 0.944 -4.651 13.269 Atomic orbital electron populations 1.69825 1.05720 1.26833 1.51777 1.25303 0.95255 0.97631 0.99009 0.87049 0.80303 0.84878 0.77246 1.21398 1.22626 1.19336 1.18922 0.84835 0.95039 1.40843 0.89176 1.44266 1.09144 1.33647 1.44918 1.21051 0.92490 0.91253 0.93399 1.22042 0.99824 0.97401 0.97981 1.21825 0.97312 0.97274 0.99243 1.22316 0.94982 0.89743 0.89525 0.87809 1.49127 1.42644 1.16910 1.04729 1.22544 0.97213 0.88827 1.00552 1.21418 1.13998 1.04675 0.91529 1.23767 0.98622 0.92866 0.99950 1.77319 1.22793 1.23303 0.88863 1.21698 0.97825 0.92496 0.88431 0.92496 0.91216 0.95498 0.91425 0.91713 0.92082 0.91980 0.81516 0.84015 0.80539 0.94908 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.97 55.49 0.78 -26.39 16 2 C 0.03 0.80 5.23 -17.43 -0.09 0.71 16 3 Si 0.88 21.82 24.35 -169.99 -4.14 17.68 16 4 H -0.29 -7.04 6.62 56.52 0.37 -6.67 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.27 -6.43 6.63 56.52 0.37 -6.05 16 7 C -0.27 -7.29 10.04 -15.06 -0.15 -7.44 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 9 N -0.60 -13.64 2.77 -172.32 -0.48 -14.12 16 10 C 0.14 2.65 6.52 -3.71 -0.02 2.62 16 11 C -0.13 -2.05 6.08 -26.61 -0.16 -2.22 16 12 C -0.12 -1.87 5.49 -26.69 -0.15 -2.02 16 13 C 0.14 2.58 3.35 -67.81 -0.23 2.35 16 14 H 0.10 2.10 8.14 -51.93 -0.42 1.67 16 15 N -0.35 -6.45 3.53 -54.75 -0.19 -6.64 16 16 C 0.06 0.92 10.58 -17.22 -0.18 0.74 16 17 C -0.29 -4.19 10.80 -40.01 -0.43 -4.62 16 18 C 0.03 0.50 12.02 -17.37 -0.21 0.29 16 19 N -0.30 -5.49 12.58 30.62 0.39 -5.11 16 20 C 0.12 2.63 3.24 -3.71 -0.01 2.62 16 21 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 22 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 23 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.17 2.42 7.13 -52.49 -0.37 2.05 16 29 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.18 1.97 8.06 -52.48 -0.42 1.55 16 31 H 0.03 0.68 5.84 -51.93 -0.30 0.38 16 32 H 0.08 1.97 4.49 -51.93 -0.23 1.73 16 LS Contribution 257.63 15.07 3.88 3.88 Total: -1.00 -30.76 257.63 -5.72 -36.48 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -4.32 Total: 1.17 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -1.64 Total: -6.96 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.49 Total: -52.25 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.14 Total: 17.68 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.76 -5.72 -36.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334677558.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.041 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds