Wall clock time and date at job start Sun Mar 29 2020 22:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99916 * 2 1 4 4 H 1.48497 * 109.47263 * 272.94548 * 3 2 1 5 5 H 1.48498 * 109.46916 * 32.94498 * 3 2 1 6 6 H 1.48499 * 109.46826 * 152.94492 * 3 2 1 7 7 C 1.38808 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00404 * 339.35912 * 7 2 1 9 9 N 1.36939 * 120.00277 * 159.36607 * 7 2 1 10 10 C 1.46918 * 120.63521 * 152.62601 * 9 7 2 11 11 C 1.53192 * 108.77900 * 126.36666 * 10 9 7 12 12 C 1.53041 * 109.30881 * 54.63611 * 11 10 9 13 13 C 1.53038 * 109.54055 * 298.63562 * 12 11 10 14 14 H 1.09003 * 109.49667 * 301.38113 * 13 12 11 15 15 N 1.46502 * 109.49938 * 181.31901 * 13 12 11 16 16 C 1.34945 * 126.03373 * 275.02100 * 15 13 12 17 17 C 1.35322 * 107.74259 * 179.74867 * 16 15 13 18 18 C 1.39863 * 107.91899 * 0.40051 * 17 16 15 19 19 N 1.30836 * 108.20614 * 359.59777 * 18 17 16 20 20 C 1.46926 * 120.62722 * 332.60145 * 9 7 2 21 21 H 0.97001 * 120.00422 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.58659 * 6.58222 * 10 9 7 23 23 H 1.09005 * 109.70427 * 246.22732 * 10 9 7 24 24 H 1.08999 * 109.49693 * 294.68815 * 11 10 9 25 25 H 1.09005 * 109.52644 * 174.60223 * 11 10 9 26 26 H 1.09002 * 109.46277 * 178.61517 * 12 11 10 27 27 H 1.08998 * 109.46197 * 58.65572 * 12 11 10 28 28 H 1.07994 * 126.13149 * 0.02562 * 16 15 13 29 29 H 1.08003 * 126.04031 * 180.26985 * 17 16 15 30 30 H 1.08003 * 125.89967 * 179.85972 * 18 17 16 31 31 H 1.08997 * 109.58780 * 113.84180 * 20 9 7 32 32 H 1.09003 * 109.58945 * 353.41911 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4354 2.0824 -1.3982 5 1 1.4801 2.6338 0.7614 6 1 3.5775 1.4230 0.6368 7 6 2.0102 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3288 9 7 3.3137 -1.2400 -0.4185 10 6 4.2349 -2.2632 0.0944 11 6 4.8746 -2.9904 -1.0926 12 6 5.5284 -1.9649 -2.0216 13 6 4.4619 -1.0079 -2.5591 14 1 3.6993 -1.5756 -3.0923 15 7 5.0837 -0.0462 -3.4728 16 6 5.6893 1.1068 -3.1198 17 6 6.1349 1.7016 -4.2507 18 6 5.7816 0.8885 -5.3324 19 7 5.1543 -0.1612 -4.8671 20 6 3.8176 -0.2584 -1.3887 21 1 -0.4851 0.8400 0.0004 22 1 3.6838 -2.9773 0.7064 23 1 5.0119 -1.7904 0.6951 24 1 4.1077 -3.5394 -1.6390 25 1 5.6308 -3.6862 -0.7290 26 1 6.0056 -2.4815 -2.8543 27 1 6.2779 -1.3993 -1.4680 28 1 5.8025 1.4849 -2.1145 29 1 6.6673 2.6396 -4.3080 30 1 5.9940 1.0900 -6.3720 31 1 4.5603 0.3801 -0.9105 32 1 2.9911 0.3504 -1.7554 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334677558.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:34 Heat of formation + Delta-G solvation = 82.059594 kcal Electronic energy + Delta-G solvation = -15430.484134 eV Core-core repulsion = 13006.700485 eV Total energy + Delta-G solvation = -2423.783649 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.16843 -39.46912 -35.40132 -33.90357 -32.68156 -30.99513 -29.91429 -27.30029 -24.83990 -24.05329 -22.09184 -21.67137 -20.75901 -18.87711 -18.30633 -17.17270 -16.07115 -16.03396 -15.72424 -15.42111 -15.09098 -14.56710 -14.35303 -14.13569 -13.89749 -13.60534 -13.46334 -12.71291 -12.55817 -12.39463 -11.90618 -11.84496 -11.75854 -11.58946 -11.48171 -10.82455 -10.37914 -9.53279 -9.05503 -8.25017 -5.59256 0.99218 1.23397 1.33363 1.42354 1.51165 1.97545 2.33810 2.96807 3.25261 3.50434 3.69309 3.90196 3.95966 4.10435 4.19741 4.25378 4.46174 4.65427 4.66485 4.74865 4.84185 4.91813 4.96818 5.03088 5.11583 5.15907 5.41549 5.76057 5.81559 6.05705 6.11106 6.79182 6.81098 7.50121 7.89350 8.94099 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026694 B = 0.011720 C = 0.009171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.691371 B = 2388.491917 C = 3052.245933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.033 4.033 3 Si 0.939 3.061 4 H -0.284 1.284 5 H -0.307 1.307 6 H -0.248 1.248 7 C -0.254 4.254 8 H 0.060 0.940 9 N -0.612 5.612 10 C 0.137 3.863 11 C -0.122 4.122 12 C -0.108 4.108 13 C 0.147 3.853 14 H 0.077 0.923 15 N -0.372 5.372 16 C 0.038 3.962 17 C -0.278 4.278 18 C 0.038 3.962 19 N -0.342 5.342 20 C 0.127 3.873 21 H 0.263 0.737 22 H 0.065 0.935 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.183 0.817 29 H 0.175 0.825 30 H 0.214 0.786 31 H 0.050 0.950 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.590 0.915 -5.204 16.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.228 4.228 3 Si 0.767 3.233 4 H -0.212 1.212 5 H -0.235 1.235 6 H -0.171 1.171 7 C -0.383 4.383 8 H 0.078 0.922 9 N -0.336 5.336 10 C 0.013 3.987 11 C -0.162 4.162 12 C -0.146 4.146 13 C 0.043 3.957 14 H 0.095 0.905 15 N -0.154 5.154 16 C -0.109 4.109 17 C -0.308 4.308 18 C -0.147 4.147 19 N -0.163 5.163 20 C 0.000 4.000 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.121 0.879 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.200 0.800 29 H 0.192 0.808 30 H 0.230 0.770 31 H 0.068 0.932 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.804 -0.229 -5.363 15.747 hybrid contribution -0.119 1.620 0.231 1.641 sum 14.685 1.392 -5.132 15.618 Atomic orbital electron populations 1.69960 1.07434 1.27374 1.54877 1.25945 0.95860 1.01059 0.99952 0.86022 0.79657 0.80456 0.77150 1.21169 1.23536 1.17124 1.18883 0.86679 0.93831 1.38954 0.92217 1.44383 1.08383 1.34916 1.45920 1.21287 0.92155 0.90411 0.94850 1.21950 1.00277 0.97443 0.96497 1.21768 0.96514 0.96728 0.99592 1.21923 0.95531 0.89712 0.88513 0.90457 1.49042 1.43884 1.17668 1.04818 1.23025 0.97350 0.88451 1.02043 1.21853 1.12985 1.05349 0.90576 1.24473 0.96749 0.91689 1.01819 1.77295 1.24701 1.25368 0.88972 1.21577 0.97023 0.92258 0.89159 0.92826 0.91635 0.93478 0.92696 0.87872 0.91085 0.90517 0.80013 0.80792 0.76989 0.93239 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.64 13.97 21.65 0.30 -59.34 16 2 C -0.03 -1.89 5.23 84.86 0.44 -1.45 16 3 Si 0.94 45.65 24.35 68.60 1.67 47.32 16 4 H -0.28 -13.57 6.62 99.48 0.66 -12.92 16 5 H -0.31 -15.18 7.11 99.48 0.71 -14.47 16 6 H -0.25 -11.02 6.63 99.48 0.66 -10.36 16 7 C -0.25 -14.11 10.04 84.03 0.84 -13.26 16 8 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 9 N -0.61 -27.63 2.77 -699.10 -1.94 -29.56 16 10 C 0.14 4.79 6.52 86.36 0.56 5.35 16 11 C -0.12 -3.46 6.08 30.67 0.19 -3.27 16 12 C -0.11 -3.11 5.49 30.62 0.17 -2.95 16 13 C 0.15 5.34 3.35 45.07 0.15 5.49 16 14 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 15 N -0.37 -12.95 3.53 -327.12 -1.15 -14.10 16 16 C 0.04 1.13 10.58 83.54 0.88 2.01 16 17 C -0.28 -7.11 10.80 21.99 0.24 -6.87 16 18 C 0.04 1.02 12.02 85.23 1.02 2.05 16 19 N -0.34 -11.88 12.58 -57.03 -0.72 -12.60 16 20 C 0.13 5.27 3.24 86.36 0.28 5.55 16 21 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 22 H 0.07 2.32 7.93 -2.38 -0.02 2.30 16 23 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 27 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.18 4.66 7.13 -2.91 -0.02 4.64 16 29 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.21 3.89 8.06 -2.91 -0.02 3.87 16 31 H 0.05 1.90 5.84 -2.39 -0.01 1.89 16 32 H 0.05 2.32 4.49 -2.39 -0.01 2.31 16 Total: -1.00 -68.23 257.63 3.95 -64.28 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.00 Total: 11.35 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 4.78 Total: -7.35 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -3.51 Total: -115.60 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.67 Total: 47.32 kcal Total: -68.23 3.95 -64.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334677558.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.339 kcal (2) G-P(sol) polarization free energy of solvation -68.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds