Wall clock time and date at job start Sun Mar 29 2020 22:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47329 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47105 * 240.00206 * 3 2 1 6 6 H 1.48503 * 109.46825 * 119.99957 * 3 2 1 7 7 C 1.38803 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99888 * 155.49686 * 7 2 1 9 9 N 1.36936 * 120.00756 * 335.49342 * 7 2 1 10 10 C 1.46932 * 120.62484 * 331.82023 * 9 7 2 11 11 C 1.52761 * 109.00441 * 233.58057 * 10 9 7 12 12 C 1.53044 * 109.38356 * 305.58599 * 11 10 9 13 13 C 1.53041 * 109.53529 * 61.24554 * 12 11 10 14 14 H 1.08994 * 109.52773 * 58.60127 * 13 12 11 15 15 N 1.46500 * 109.49442 * 178.68688 * 13 12 11 16 16 C 1.34947 * 126.04273 * 84.83387 * 15 13 12 17 17 C 1.35313 * 107.74523 * 179.97438 * 16 15 13 18 18 C 1.39869 * 107.92476 * 0.02562 * 17 16 15 19 19 N 1.30844 * 108.19921 * 359.73922 * 18 17 16 20 20 C 1.46922 * 120.63625 * 152.09452 * 9 7 2 21 21 H 0.97002 * 120.00481 * 174.24549 * 1 2 3 22 22 H 1.09003 * 109.58609 * 353.41270 * 10 9 7 23 23 H 1.08993 * 109.58780 * 113.84153 * 10 9 7 24 24 H 1.09006 * 109.56299 * 185.55064 * 11 10 9 25 25 H 1.09002 * 109.38821 * 65.51517 * 11 10 9 26 26 H 1.09003 * 109.46011 * 301.22012 * 12 11 10 27 27 H 1.08996 * 109.44694 * 181.25418 * 12 11 10 28 28 H 1.07997 * 126.12516 * 359.95969 * 16 15 13 29 29 H 1.08001 * 126.03487 * 180.02562 * 17 16 15 30 30 H 1.07993 * 125.89929 * 180.02562 * 18 17 16 31 31 H 1.08999 * 109.58741 * 246.15851 * 20 9 7 32 32 H 1.08998 * 109.58390 * 6.58234 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1038 1.6964 -1.2125 6 1 3.1039 1.6964 1.2126 7 6 2.0101 -1.2021 -0.0005 8 1 3.0172 -1.2441 -0.3885 9 7 1.4181 -2.3349 0.4908 10 6 0.3872 -2.2483 1.5342 11 6 0.7855 -3.1479 2.7029 12 6 1.0415 -4.5661 2.1879 13 6 2.1921 -4.5443 1.1790 14 1 3.0866 -4.1429 1.6552 15 7 2.4571 -5.9067 0.7102 16 6 1.8167 -6.5390 -0.2954 17 6 2.3547 -7.7749 -0.4144 18 6 3.3579 -7.9025 0.5519 19 7 3.4237 -6.7813 1.2231 20 6 1.8058 -3.6602 -0.0109 21 1 -0.4851 -0.8358 -0.0842 22 1 0.3030 -1.2180 1.8801 23 1 -0.5696 -2.5799 1.1310 24 1 -0.0185 -3.1676 3.4388 25 1 1.6928 -2.7595 3.1656 26 1 0.1412 -4.9448 1.7039 27 1 1.3041 -5.2140 3.0241 28 1 1.0177 -6.1317 -0.8971 29 1 2.0613 -8.5294 -1.1292 30 1 3.9750 -8.7740 0.7128 31 1 0.9670 -4.1093 -0.5427 32 1 2.6572 -3.5613 -0.6842 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334677559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:38 Heat of formation + Delta-G solvation = 93.749021 kcal Electronic energy + Delta-G solvation = -15203.182423 eV Core-core repulsion = 12779.905665 eV Total energy + Delta-G solvation = -2423.276757 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.94463 -37.82405 -33.98735 -31.91476 -30.56148 -29.80276 -28.19172 -25.26995 -23.08703 -22.33783 -20.87151 -20.38799 -18.99639 -17.60933 -16.76801 -14.78709 -14.52517 -14.49840 -14.27061 -13.65335 -13.59589 -13.21119 -12.87894 -12.53821 -12.41568 -12.13961 -11.19620 -10.84627 -10.78173 -10.52780 -10.44987 -10.30866 -10.14544 -10.05436 -9.44231 -9.14219 -8.54015 -8.31331 -7.07427 -6.19817 -3.38866 2.18897 2.78379 3.06186 3.44732 3.47791 3.65774 4.49972 4.85589 5.03781 5.11796 5.18854 5.24300 5.38530 5.46691 5.57984 5.76143 5.87041 5.97701 6.02763 6.21292 6.27921 6.30448 6.40110 6.43531 6.49369 6.89201 6.92728 7.04397 7.33049 7.87060 7.98970 8.44244 8.94209 9.69387 10.09589 11.09250 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047102 B = 0.007324 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.317898 B = 3822.186965 C = 4026.974960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.018 4.018 3 Si 1.066 2.934 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.358 4.358 8 H 0.058 0.942 9 N -0.591 5.591 10 C 0.145 3.855 11 C -0.134 4.134 12 C -0.116 4.116 13 C 0.139 3.861 14 H 0.099 0.901 15 N -0.352 5.352 16 C 0.060 3.940 17 C -0.288 4.288 18 C 0.033 3.967 19 N -0.304 5.304 20 C 0.146 3.854 21 H 0.270 0.730 22 H 0.085 0.915 23 H 0.021 0.979 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.170 0.830 29 H 0.142 0.858 30 H 0.177 0.823 31 H 0.025 0.975 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.853 -10.769 1.588 11.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.221 4.221 3 Si 0.895 3.105 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.487 4.487 8 H 0.076 0.924 9 N -0.314 5.314 10 C 0.019 3.981 11 C -0.174 4.174 12 C -0.155 4.155 13 C 0.035 3.965 14 H 0.117 0.883 15 N -0.133 5.133 16 C -0.088 4.088 17 C -0.318 4.318 18 C -0.152 4.152 19 N -0.126 5.126 20 C 0.018 3.982 21 H 0.081 0.919 22 H 0.103 0.897 23 H 0.039 0.961 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.187 0.813 29 H 0.160 0.840 30 H 0.194 0.806 31 H 0.043 0.957 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.248 -8.284 2.632 8.978 hybrid contribution -0.203 -2.320 -0.812 2.467 sum 2.045 -10.605 1.821 10.952 Atomic orbital electron populations 1.70794 1.06611 1.30428 1.47246 1.25908 0.96477 1.01500 0.98194 0.83512 0.74812 0.75809 0.76357 1.20937 1.21832 1.21882 1.19977 0.97474 0.87996 1.43219 0.92378 1.44043 1.45730 1.00450 1.41204 1.20992 0.90366 0.99508 0.87204 1.22025 1.01460 0.94367 0.99549 1.21814 0.97330 0.98459 0.97901 1.22224 0.99791 0.76072 0.98373 0.88305 1.49097 1.26041 1.12706 1.25489 1.22562 0.99265 0.93764 0.93233 1.21426 1.04683 0.98631 1.07058 1.23770 0.99102 0.96811 0.95555 1.77324 1.10895 1.01338 1.23015 1.21126 0.98465 0.86752 0.91843 0.91943 0.89719 0.96109 0.92036 0.91857 0.92097 0.92433 0.81277 0.84042 0.80601 0.95679 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.43 12.42 55.49 0.69 -25.74 16 2 C -0.02 -0.50 4.69 -17.43 -0.08 -0.58 16 3 Si 1.07 24.59 29.98 -169.99 -5.10 19.49 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.36 -9.72 9.49 -15.06 -0.14 -9.86 16 8 H 0.06 1.59 7.94 -52.48 -0.42 1.18 16 9 N -0.59 -14.26 2.85 -172.59 -0.49 -14.75 16 10 C 0.14 3.23 4.66 -3.93 -0.02 3.21 16 11 C -0.13 -2.44 6.06 -26.83 -0.16 -2.60 16 12 C -0.12 -1.99 5.49 -26.69 -0.15 -2.13 16 13 C 0.14 2.54 3.35 -67.81 -0.23 2.31 16 14 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 15 N -0.35 -6.10 3.53 -54.75 -0.19 -6.29 16 16 C 0.06 0.90 10.58 -17.22 -0.18 0.72 16 17 C -0.29 -3.94 10.80 -40.01 -0.43 -4.37 16 18 C 0.03 0.47 12.03 -17.36 -0.21 0.26 16 19 N -0.30 -5.32 12.58 30.62 0.39 -4.94 16 20 C 0.15 3.00 5.56 -3.71 -0.02 2.98 16 21 H 0.27 7.84 6.69 -40.82 -0.27 7.57 16 22 H 0.08 2.12 6.32 -51.93 -0.33 1.79 16 23 H 0.02 0.47 7.86 -51.93 -0.41 0.06 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.17 2.23 7.14 -52.49 -0.37 1.86 16 29 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.18 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.03 0.50 6.90 -51.93 -0.36 0.14 16 32 H 0.06 1.37 7.93 -51.93 -0.41 0.96 16 LS Contribution 263.00 15.07 3.96 3.96 Total: -1.00 -29.99 263.00 -6.69 -36.68 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.33 Total: 1.64 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -1.62 Total: -10.06 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 0.39 Total: -51.72 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.10 Total: 19.49 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.99 -6.69 -36.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334677559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.432 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds