Wall clock time and date at job start Sun Mar 29 2020 22:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47329 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47105 * 240.00206 * 3 2 1 6 6 H 1.48503 * 109.46825 * 119.99957 * 3 2 1 7 7 C 1.38803 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99888 * 155.49686 * 7 2 1 9 9 N 1.36936 * 120.00756 * 335.49342 * 7 2 1 10 10 C 1.46932 * 120.62484 * 331.82023 * 9 7 2 11 11 C 1.52761 * 109.00441 * 233.58057 * 10 9 7 12 12 C 1.53044 * 109.38356 * 305.58599 * 11 10 9 13 13 C 1.53041 * 109.53529 * 61.24554 * 12 11 10 14 14 H 1.08994 * 109.52773 * 58.60127 * 13 12 11 15 15 N 1.46500 * 109.49442 * 178.68688 * 13 12 11 16 16 C 1.34947 * 126.04273 * 84.83387 * 15 13 12 17 17 C 1.35313 * 107.74523 * 179.97438 * 16 15 13 18 18 C 1.39869 * 107.92476 * 0.02562 * 17 16 15 19 19 N 1.30844 * 108.19921 * 359.73922 * 18 17 16 20 20 C 1.46922 * 120.63625 * 152.09452 * 9 7 2 21 21 H 0.97002 * 120.00481 * 174.24549 * 1 2 3 22 22 H 1.09003 * 109.58609 * 353.41270 * 10 9 7 23 23 H 1.08993 * 109.58780 * 113.84153 * 10 9 7 24 24 H 1.09006 * 109.56299 * 185.55064 * 11 10 9 25 25 H 1.09002 * 109.38821 * 65.51517 * 11 10 9 26 26 H 1.09003 * 109.46011 * 301.22012 * 12 11 10 27 27 H 1.08996 * 109.44694 * 181.25418 * 12 11 10 28 28 H 1.07997 * 126.12516 * 359.95969 * 16 15 13 29 29 H 1.08001 * 126.03487 * 180.02562 * 17 16 15 30 30 H 1.07993 * 125.89929 * 180.02562 * 18 17 16 31 31 H 1.08999 * 109.58741 * 246.15851 * 20 9 7 32 32 H 1.08998 * 109.58390 * 6.58234 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1038 1.6964 -1.2125 6 1 3.1039 1.6964 1.2126 7 6 2.0101 -1.2021 -0.0005 8 1 3.0172 -1.2441 -0.3885 9 7 1.4181 -2.3349 0.4908 10 6 0.3872 -2.2483 1.5342 11 6 0.7855 -3.1479 2.7029 12 6 1.0415 -4.5661 2.1879 13 6 2.1921 -4.5443 1.1790 14 1 3.0866 -4.1429 1.6552 15 7 2.4571 -5.9067 0.7102 16 6 1.8167 -6.5390 -0.2954 17 6 2.3547 -7.7749 -0.4144 18 6 3.3579 -7.9025 0.5519 19 7 3.4237 -6.7813 1.2231 20 6 1.8058 -3.6602 -0.0109 21 1 -0.4851 -0.8358 -0.0842 22 1 0.3030 -1.2180 1.8801 23 1 -0.5696 -2.5799 1.1310 24 1 -0.0185 -3.1676 3.4388 25 1 1.6928 -2.7595 3.1656 26 1 0.1412 -4.9448 1.7039 27 1 1.3041 -5.2140 3.0241 28 1 1.0177 -6.1317 -0.8971 29 1 2.0613 -8.5294 -1.1292 30 1 3.9750 -8.7740 0.7128 31 1 0.9670 -4.1093 -0.5427 32 1 2.6572 -3.5613 -0.6842 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334677559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:38 Heat of formation + Delta-G solvation = 75.736894 kcal Electronic energy + Delta-G solvation = -15203.963487 eV Core-core repulsion = 12779.905665 eV Total energy + Delta-G solvation = -2424.057822 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.15382 -39.45624 -35.74324 -33.43103 -32.40744 -30.98780 -29.64336 -27.18760 -24.54271 -24.07290 -22.13768 -21.75367 -20.51588 -19.47947 -18.13134 -16.37308 -16.17952 -15.96671 -15.72997 -15.45394 -15.15563 -14.56393 -14.33295 -14.10813 -13.75220 -13.52175 -13.01317 -12.62261 -12.37921 -12.01928 -11.95999 -11.92962 -11.87782 -11.61890 -11.31844 -10.58506 -10.36652 -9.52513 -9.04867 -8.32942 -5.50338 1.00417 1.49411 1.59038 1.64519 1.84094 1.98454 2.61671 3.15001 3.42471 3.51956 3.69735 3.90482 3.93619 4.09083 4.20196 4.26862 4.49812 4.60841 4.72934 4.74939 4.81671 4.90552 4.93982 4.98875 5.16771 5.17624 5.33981 5.74323 5.81928 6.11659 6.33301 6.81914 6.94118 7.66374 8.07560 8.93617 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047102 B = 0.007324 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.317898 B = 3822.186965 C = 4026.974960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.064 4.064 3 Si 1.113 2.887 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.366 4.366 8 H 0.049 0.951 9 N -0.610 5.610 10 C 0.150 3.850 11 C -0.123 4.123 12 C -0.105 4.105 13 C 0.154 3.846 14 H 0.079 0.921 15 N -0.370 5.370 16 C 0.044 3.956 17 C -0.279 4.279 18 C 0.039 3.961 19 N -0.344 5.344 20 C 0.152 3.848 21 H 0.257 0.743 22 H 0.052 0.948 23 H 0.016 0.984 24 H 0.089 0.911 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.184 0.816 29 H 0.174 0.826 30 H 0.213 0.787 31 H 0.036 0.964 32 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.243 -12.396 1.700 12.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.262 4.262 3 Si 0.937 3.063 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.495 4.495 8 H 0.067 0.933 9 N -0.334 5.334 10 C 0.025 3.975 11 C -0.162 4.162 12 C -0.144 4.144 13 C 0.050 3.950 14 H 0.097 0.903 15 N -0.152 5.152 16 C -0.102 4.102 17 C -0.309 4.309 18 C -0.146 4.146 19 N -0.166 5.166 20 C 0.024 3.976 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.107 0.893 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.201 0.799 29 H 0.191 0.809 30 H 0.230 0.770 31 H 0.054 0.946 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.647 -9.959 2.742 10.663 hybrid contribution -0.297 -1.961 -0.910 2.182 sum 2.350 -11.919 1.832 12.286 Atomic orbital electron populations 1.70901 1.07431 1.29694 1.49623 1.27168 0.96568 1.04557 0.97894 0.82879 0.73927 0.72150 0.77304 1.21427 1.20262 1.20607 1.20175 0.97165 0.89430 1.42738 0.93347 1.44221 1.46055 1.01056 1.42109 1.20884 0.89880 0.98595 0.88149 1.21881 1.01996 0.94114 0.98232 1.21715 0.97071 0.97653 0.97957 1.21739 0.99324 0.76785 0.97145 0.90293 1.48948 1.27179 1.12356 1.26742 1.23014 0.99751 0.94489 0.92955 1.21842 1.03610 0.98516 1.06883 1.24470 0.98916 0.96765 0.94484 1.77304 1.11846 1.02620 1.24791 1.21098 0.98060 0.85719 0.92689 0.93261 0.92979 0.96601 0.89283 0.92561 0.91321 0.91106 0.79938 0.80882 0.77047 0.94610 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.36 12.42 21.65 0.27 -55.09 16 2 C -0.06 -3.59 4.69 84.86 0.40 -3.19 16 3 Si 1.11 49.96 29.98 68.60 2.06 52.02 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.37 -20.22 9.49 84.03 0.80 -19.43 16 8 H 0.05 2.71 7.94 -2.91 -0.02 2.69 16 9 N -0.61 -29.90 2.85 -699.94 -2.00 -31.90 16 10 C 0.15 6.77 4.66 86.22 0.40 7.17 16 11 C -0.12 -4.34 6.06 30.53 0.19 -4.16 16 12 C -0.11 -3.43 5.49 30.62 0.17 -3.27 16 13 C 0.15 5.56 3.35 45.07 0.15 5.71 16 14 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 15 N -0.37 -12.34 3.53 -327.13 -1.15 -13.50 16 16 C 0.04 1.25 10.58 83.54 0.88 2.13 16 17 C -0.28 -6.70 10.80 21.99 0.24 -6.47 16 18 C 0.04 0.99 12.03 85.23 1.03 2.02 16 19 N -0.34 -11.46 12.58 -57.02 -0.72 -12.18 16 20 C 0.15 6.24 5.56 86.36 0.48 6.72 16 21 H 0.26 15.40 6.69 -92.71 -0.62 14.78 16 22 H 0.05 2.68 6.32 -2.39 -0.02 2.66 16 23 H 0.02 0.73 7.86 -2.39 -0.02 0.71 16 24 H 0.09 2.66 8.14 -2.38 -0.02 2.65 16 25 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.18 4.45 7.14 -2.91 -0.02 4.43 16 29 H 0.17 2.98 8.06 -2.91 -0.02 2.95 16 30 H 0.21 3.61 8.06 -2.91 -0.02 3.58 16 31 H 0.04 1.40 6.90 -2.39 -0.02 1.38 16 32 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 Total: -1.00 -64.97 263.00 4.43 -60.54 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.24 Total: 12.86 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 4.73 Total: -12.75 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -3.60 Total: -112.66 kcal Atomic # 14 Polarization: 49.96 SS G_CDS: 2.06 Total: 52.02 kcal Total: -64.97 4.43 -60.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334677559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.276 kcal (2) G-P(sol) polarization free energy of solvation -64.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds