Wall clock time and date at job start Sun Mar 29 2020 22:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00253 * 2 1 4 4 H 1.48502 * 109.47174 * 272.91910 * 3 2 1 5 5 H 1.48504 * 109.46878 * 32.91682 * 3 2 1 6 6 H 1.48495 * 109.47285 * 152.91690 * 3 2 1 7 7 C 1.38823 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 339.36341 * 7 2 1 9 9 N 1.36935 * 119.99882 * 159.36625 * 7 2 1 10 10 C 1.46927 * 120.63079 * 152.61745 * 9 7 2 11 11 C 1.53187 * 108.77643 * 126.38869 * 10 9 7 12 12 C 1.53034 * 109.31573 * 54.63106 * 11 10 9 13 13 C 1.53038 * 109.53990 * 298.63854 * 12 11 10 14 14 H 1.09008 * 109.49388 * 301.37800 * 13 12 11 15 15 C 1.50700 * 109.49870 * 181.31686 * 13 12 11 16 16 N 1.30504 * 125.65004 * 95.08716 * 15 13 12 17 17 C 1.34128 * 109.25290 * 179.73364 * 16 15 13 18 18 C 1.34669 * 108.02112 * 0.40105 * 17 16 15 19 19 N 1.35036 * 125.65171 * 275.06112 * 15 13 12 20 20 H 0.97005 * 126.39661 * 0.02562 * 19 15 13 21 21 C 1.46936 * 120.60297 * 332.58936 * 9 7 2 22 22 H 0.97001 * 120.00011 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.58162 * 6.59617 * 10 9 7 24 24 H 1.09000 * 109.69774 * 246.24651 * 10 9 7 25 25 H 1.09000 * 109.49596 * 294.67832 * 11 10 9 26 26 H 1.09004 * 109.52076 * 174.60468 * 11 10 9 27 27 H 1.09005 * 109.45950 * 178.61146 * 12 11 10 28 28 H 1.09001 * 109.44505 * 58.64976 * 12 11 10 29 29 H 1.08001 * 125.98525 * 180.24517 * 17 16 15 30 30 H 1.08003 * 126.58860 * 179.88124 * 18 17 16 31 31 H 1.09003 * 109.55876 * 113.81194 * 21 9 7 32 32 H 1.09003 * 109.61828 * 353.37783 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4360 2.0820 -1.3983 5 1 1.4799 2.6340 0.7609 6 1 3.5772 1.4231 0.6374 7 6 2.0102 -1.2023 -0.0005 8 1 1.5221 -2.1076 0.3287 9 7 3.3137 -1.2401 -0.4185 10 6 4.2349 -2.2633 0.0946 11 6 4.8750 -2.9901 -1.0923 12 6 5.5289 -1.9646 -2.0211 13 6 4.4624 -1.0078 -2.5588 14 1 3.6999 -1.5756 -3.0922 15 6 5.1019 -0.0184 -3.4985 16 7 5.1628 -0.1326 -4.7971 17 6 5.7973 0.9341 -5.3056 18 6 6.1506 1.7355 -4.2826 19 7 5.7067 1.1334 -3.1364 20 1 5.8077 1.4711 -2.2326 21 6 3.8169 -0.2583 -1.3890 22 1 -0.4850 0.8400 -0.0004 23 1 3.6837 -2.9774 0.7064 24 1 5.0116 -1.7903 0.6955 25 1 4.1084 -3.5393 -1.6389 26 1 5.6312 -3.6858 -0.7285 27 1 6.0064 -2.4812 -2.8537 28 1 6.2780 -1.3990 -1.4670 29 1 5.9930 1.1169 -6.3519 30 1 6.6784 2.6751 -4.3535 31 1 4.5590 0.3806 -0.9103 32 1 2.9903 0.3499 -1.7563 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335214593.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:37 Heat of formation + Delta-G solvation = 74.897782 kcal Electronic energy + Delta-G solvation = -15409.359466 eV Core-core repulsion = 12985.265257 eV Total energy + Delta-G solvation = -2424.094208 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.85167 -37.87230 -33.35792 -32.29569 -31.62058 -30.69838 -28.05048 -25.33951 -23.32527 -22.29838 -21.24281 -20.19201 -19.40061 -17.70227 -16.78194 -15.43239 -14.80624 -14.34525 -14.11564 -13.81940 -13.64182 -13.39160 -13.21400 -12.92872 -12.28540 -12.02237 -11.59680 -10.96835 -10.74964 -10.62381 -10.22690 -10.03469 -9.86537 -9.81477 -9.78899 -9.54054 -8.70182 -8.16603 -7.06647 -6.01475 -3.37867 2.27038 3.22058 3.35434 3.36384 3.37240 3.40872 4.43701 4.53490 5.02327 5.19028 5.24009 5.31741 5.42543 5.47042 5.62743 5.71690 5.86657 5.94111 6.06612 6.23676 6.27483 6.31463 6.45205 6.52685 6.60608 6.64725 6.90124 6.94568 7.55874 7.88277 8.27363 8.34097 8.85986 9.64394 10.01141 11.14470 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026564 B = 0.011692 C = 0.009123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.790596 B = 2394.291125 C = 3068.596663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.025 3.975 3 Si 0.877 3.123 4 H -0.289 1.289 5 H -0.301 1.301 6 H -0.271 1.271 7 C -0.262 4.262 8 H 0.089 0.911 9 N -0.601 5.601 10 C 0.145 3.855 11 C -0.136 4.136 12 C -0.098 4.098 13 C -0.026 4.026 14 H 0.105 0.895 15 C 0.235 3.765 16 N -0.496 5.496 17 C -0.031 4.031 18 C -0.070 4.070 19 N -0.566 5.566 20 H 0.417 0.583 21 C 0.134 3.866 22 H 0.264 0.736 23 H 0.066 0.934 24 H 0.023 0.977 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.166 0.834 30 H 0.172 0.828 31 H 0.018 0.982 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.180 1.249 -4.580 14.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.174 4.174 3 Si 0.707 3.293 4 H -0.217 1.217 5 H -0.229 1.229 6 H -0.196 1.196 7 C -0.390 4.390 8 H 0.107 0.893 9 N -0.324 5.324 10 C 0.020 3.980 11 C -0.175 4.175 12 C -0.137 4.137 13 C -0.049 4.049 14 H 0.123 0.877 15 C -0.030 4.030 16 N -0.215 5.215 17 C -0.179 4.179 18 C -0.204 4.204 19 N -0.169 5.169 20 H 0.255 0.745 21 C 0.007 3.993 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.041 0.959 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.184 0.816 30 H 0.190 0.810 31 H 0.035 0.965 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.682 0.680 -5.050 13.667 hybrid contribution 0.860 2.106 0.718 2.385 sum 13.541 2.785 -4.332 14.488 Atomic orbital electron populations 1.69825 1.05656 1.26601 1.52507 1.25287 0.95226 0.97452 0.99429 0.87025 0.80222 0.85163 0.76894 1.21701 1.22876 1.19609 1.18946 0.84931 0.94896 1.40243 0.89316 1.44289 1.08909 1.33418 1.45769 1.20999 0.92358 0.91245 0.93417 1.22021 0.99711 0.97497 0.98231 1.21416 0.96649 0.96895 0.98721 1.20408 0.97183 0.93513 0.93755 0.87675 1.23529 0.98900 0.88559 0.91977 1.70276 1.20277 1.24731 1.06233 1.22304 1.03458 0.92998 0.99182 1.22675 1.09321 1.02293 0.86096 1.43359 1.44541 1.19150 1.09852 0.74465 1.21346 0.97145 0.92142 0.88645 0.92652 0.91573 0.95932 0.91468 0.92264 0.92221 0.92890 0.81645 0.81036 0.96462 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.97 55.49 0.78 -26.79 16 2 C 0.03 0.73 5.23 -17.43 -0.09 0.64 16 3 Si 0.88 21.92 24.34 -169.99 -4.14 17.78 16 4 H -0.29 -7.09 6.62 56.52 0.37 -6.71 16 5 H -0.30 -7.68 7.11 56.52 0.40 -7.27 16 6 H -0.27 -6.49 6.63 56.52 0.37 -6.12 16 7 C -0.26 -7.22 10.03 -15.06 -0.15 -7.37 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 9 N -0.60 -13.94 2.77 -172.31 -0.48 -14.42 16 10 C 0.15 2.75 6.52 -3.71 -0.02 2.73 16 11 C -0.14 -2.15 6.08 -26.62 -0.16 -2.32 16 12 C -0.10 -1.56 5.15 -26.69 -0.14 -1.70 16 13 C -0.03 -0.49 2.81 -91.65 -0.26 -0.75 16 14 H 0.11 2.12 8.14 -51.92 -0.42 1.70 16 15 C 0.24 4.20 6.87 -155.42 -1.07 3.14 16 16 N -0.50 -9.16 11.25 -10.82 -0.12 -9.28 16 17 C -0.03 -0.47 11.87 -17.81 -0.21 -0.68 16 18 C -0.07 -0.93 12.04 -16.56 -0.20 -1.13 16 19 N -0.57 -8.59 5.91 -10.23 -0.06 -8.65 16 20 H 0.42 5.56 8.01 -40.82 -0.33 5.24 16 21 C 0.13 2.86 3.32 -3.71 -0.01 2.85 16 22 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 23 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 30 H 0.17 1.59 8.06 -52.48 -0.42 1.16 16 31 H 0.02 0.35 6.12 -51.93 -0.32 0.04 16 32 H 0.08 1.85 4.50 -51.93 -0.23 1.62 16 LS Contribution 256.41 15.07 3.86 3.86 Total: -1.00 -31.92 256.41 -6.76 -38.68 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -4.28 Total: 3.40 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.31 Total: -4.59 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.12 Total: -59.13 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.14 Total: 17.78 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.92 -6.76 -38.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335214593.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.575 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds