Wall clock time and date at job start Sun Mar 29 2020 22:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00253 * 2 1 4 4 H 1.48502 * 109.47174 * 272.91910 * 3 2 1 5 5 H 1.48504 * 109.46878 * 32.91682 * 3 2 1 6 6 H 1.48495 * 109.47285 * 152.91690 * 3 2 1 7 7 C 1.38823 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 339.36341 * 7 2 1 9 9 N 1.36935 * 119.99882 * 159.36625 * 7 2 1 10 10 C 1.46927 * 120.63079 * 152.61745 * 9 7 2 11 11 C 1.53187 * 108.77643 * 126.38869 * 10 9 7 12 12 C 1.53034 * 109.31573 * 54.63106 * 11 10 9 13 13 C 1.53038 * 109.53990 * 298.63854 * 12 11 10 14 14 H 1.09008 * 109.49388 * 301.37800 * 13 12 11 15 15 C 1.50700 * 109.49870 * 181.31686 * 13 12 11 16 16 N 1.30504 * 125.65004 * 95.08716 * 15 13 12 17 17 C 1.34128 * 109.25290 * 179.73364 * 16 15 13 18 18 C 1.34669 * 108.02112 * 0.40105 * 17 16 15 19 19 N 1.35036 * 125.65171 * 275.06112 * 15 13 12 20 20 H 0.97005 * 126.39661 * 0.02562 * 19 15 13 21 21 C 1.46936 * 120.60297 * 332.58936 * 9 7 2 22 22 H 0.97001 * 120.00011 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.58162 * 6.59617 * 10 9 7 24 24 H 1.09000 * 109.69774 * 246.24651 * 10 9 7 25 25 H 1.09000 * 109.49596 * 294.67832 * 11 10 9 26 26 H 1.09004 * 109.52076 * 174.60468 * 11 10 9 27 27 H 1.09005 * 109.45950 * 178.61146 * 12 11 10 28 28 H 1.09001 * 109.44505 * 58.64976 * 12 11 10 29 29 H 1.08001 * 125.98525 * 180.24517 * 17 16 15 30 30 H 1.08003 * 126.58860 * 179.88124 * 18 17 16 31 31 H 1.09003 * 109.55876 * 113.81194 * 21 9 7 32 32 H 1.09003 * 109.61828 * 353.37783 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4360 2.0820 -1.3983 5 1 1.4799 2.6340 0.7609 6 1 3.5772 1.4231 0.6374 7 6 2.0102 -1.2023 -0.0005 8 1 1.5221 -2.1076 0.3287 9 7 3.3137 -1.2401 -0.4185 10 6 4.2349 -2.2633 0.0946 11 6 4.8750 -2.9901 -1.0923 12 6 5.5289 -1.9646 -2.0211 13 6 4.4624 -1.0078 -2.5588 14 1 3.6999 -1.5756 -3.0922 15 6 5.1019 -0.0184 -3.4985 16 7 5.1628 -0.1326 -4.7971 17 6 5.7973 0.9341 -5.3056 18 6 6.1506 1.7355 -4.2826 19 7 5.7067 1.1334 -3.1364 20 1 5.8077 1.4711 -2.2326 21 6 3.8169 -0.2583 -1.3890 22 1 -0.4850 0.8400 -0.0004 23 1 3.6837 -2.9774 0.7064 24 1 5.0116 -1.7903 0.6955 25 1 4.1084 -3.5393 -1.6389 26 1 5.6312 -3.6858 -0.7285 27 1 6.0064 -2.4812 -2.8537 28 1 6.2780 -1.3990 -1.4670 29 1 5.9930 1.1169 -6.3519 30 1 6.6784 2.6751 -4.3535 31 1 4.5590 0.3806 -0.9103 32 1 2.9903 0.3499 -1.7563 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335214593.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:37 Heat of formation + Delta-G solvation = 52.732592 kcal Electronic energy + Delta-G solvation = -15410.320621 eV Core-core repulsion = 12985.265257 eV Total energy + Delta-G solvation = -2425.055363 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.04183 -39.44149 -35.18700 -33.53809 -33.23563 -32.41085 -29.30438 -27.20408 -24.78940 -23.96697 -22.42658 -21.47901 -20.91159 -18.98223 -18.71540 -17.25039 -16.05022 -16.02277 -15.57203 -15.31185 -15.13066 -14.78533 -14.45270 -14.38105 -14.10479 -13.62231 -13.36912 -12.64562 -12.37460 -12.29414 -11.79030 -11.70862 -11.51421 -11.37731 -11.04583 -11.01329 -10.73606 -9.33220 -8.97265 -8.20477 -5.52982 1.12472 1.22178 1.33494 1.43276 2.16587 2.23859 2.37176 2.92218 3.24502 3.56130 3.88779 3.92774 4.14152 4.24097 4.34329 4.41675 4.53658 4.59348 4.70887 4.83452 4.84966 5.03485 5.12482 5.14367 5.18442 5.25694 5.52657 5.83040 5.84310 6.10169 6.43900 6.86229 7.15693 7.57049 7.97098 8.99285 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026564 B = 0.011692 C = 0.009123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.790596 B = 2394.291125 C = 3068.596663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.038 4.038 3 Si 0.943 3.057 4 H -0.283 1.283 5 H -0.310 1.310 6 H -0.248 1.248 7 C -0.250 4.250 8 H 0.055 0.945 9 N -0.616 5.616 10 C 0.139 3.861 11 C -0.126 4.126 12 C -0.090 4.090 13 C -0.016 4.016 14 H 0.076 0.924 15 C 0.207 3.793 16 N -0.529 5.529 17 C -0.058 4.058 18 C -0.044 4.044 19 N -0.563 5.563 20 H 0.427 0.573 21 C 0.136 3.864 22 H 0.261 0.739 23 H 0.059 0.941 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.191 0.809 30 H 0.219 0.781 31 H 0.039 0.961 32 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.552 2.444 -4.965 17.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.233 4.233 3 Si 0.772 3.228 4 H -0.210 1.210 5 H -0.239 1.239 6 H -0.172 1.172 7 C -0.380 4.380 8 H 0.073 0.927 9 N -0.340 5.340 10 C 0.015 3.985 11 C -0.165 4.165 12 C -0.129 4.129 13 C -0.039 4.039 14 H 0.094 0.906 15 C -0.058 4.058 16 N -0.249 5.249 17 C -0.206 4.206 18 C -0.178 4.178 19 N -0.166 5.166 20 H 0.266 0.734 21 C 0.010 3.990 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.208 0.792 30 H 0.235 0.765 31 H 0.057 0.943 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 16.115 1.853 -5.434 17.107 hybrid contribution -0.167 1.665 0.773 1.843 sum 15.948 3.518 -4.662 16.983 Atomic orbital electron populations 1.69972 1.07489 1.27223 1.55454 1.25965 0.95889 1.01140 1.00275 0.85945 0.79558 0.80274 0.77035 1.21030 1.23864 1.17155 1.18899 0.86872 0.93669 1.38546 0.92689 1.44422 1.08091 1.34813 1.46704 1.21227 0.92038 0.90422 0.94859 1.21938 1.00074 0.97688 0.96812 1.21386 0.95997 0.96388 0.99085 1.20099 0.97350 0.93778 0.92624 0.90600 1.23176 1.00962 0.89782 0.91840 1.70191 1.21187 1.26686 1.06833 1.22859 1.03969 0.92685 1.01041 1.23405 1.07020 1.02740 0.84646 1.43391 1.43927 1.18389 1.10925 0.73393 1.21297 0.96479 0.91922 0.89276 0.92980 0.92287 0.93811 0.93017 0.88548 0.91107 0.91081 0.79248 0.76485 0.94305 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.60 13.97 21.65 0.30 -60.30 16 2 C -0.04 -2.22 5.23 84.87 0.44 -1.78 16 3 Si 0.94 45.67 24.34 68.60 1.67 47.34 16 4 H -0.28 -13.28 6.62 99.48 0.66 -12.62 16 5 H -0.31 -15.33 7.11 99.48 0.71 -14.62 16 6 H -0.25 -10.90 6.63 99.48 0.66 -10.24 16 7 C -0.25 -14.14 10.03 84.04 0.84 -13.30 16 8 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16 9 N -0.62 -28.29 2.77 -699.07 -1.94 -30.23 16 10 C 0.14 5.01 6.52 86.36 0.56 5.57 16 11 C -0.13 -3.71 6.08 30.67 0.19 -3.53 16 12 C -0.09 -2.61 5.15 30.62 0.16 -2.46 16 13 C -0.02 -0.58 2.81 -11.46 -0.03 -0.62 16 14 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 15 C 0.21 7.00 6.87 138.13 0.95 7.95 16 16 N -0.53 -18.73 11.25 -188.13 -2.12 -20.84 16 17 C -0.06 -1.59 11.87 83.52 0.99 -0.60 16 18 C -0.04 -0.99 12.04 83.09 1.00 0.01 16 19 N -0.56 -15.10 5.91 -186.28 -1.10 -16.20 16 20 H 0.43 9.64 8.01 -92.70 -0.74 8.89 16 21 C 0.14 5.64 3.32 86.36 0.29 5.92 16 22 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 23 H 0.06 2.18 7.93 -2.39 -0.02 2.16 16 24 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.07 1.93 8.14 -2.38 -0.02 1.92 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.19 3.94 8.06 -2.91 -0.02 3.92 16 30 H 0.22 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.04 1.45 6.12 -2.39 -0.01 1.43 16 32 H 0.04 2.11 4.50 -2.39 -0.01 2.10 16 Total: -1.00 -71.42 256.41 2.49 -68.93 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.28 Total: 14.12 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 5.39 Total: -2.82 kcal Atomic # 7 Polarization: -122.72 SS G_CDS: -4.85 Total: -127.57 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.67 Total: 47.34 kcal Total: -71.42 2.49 -68.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335214593.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.664 kcal (2) G-P(sol) polarization free energy of solvation -71.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds