Wall clock time and date at job start Sun Mar 29 2020 22:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39864 * 126.04094 * 2 1 4 4 N 1.30845 * 108.20134 * 179.73876 * 3 2 1 5 5 N 1.40090 * 108.20144 * 0.40870 * 4 3 2 6 6 C 1.46499 * 126.03177 * 179.85855 * 5 4 3 7 7 H 1.08998 * 110.63988 * 336.36759 * 6 5 4 8 8 C 1.55151 * 110.87386 * 99.62224 * 6 5 4 9 9 C 1.55131 * 101.48892 * 82.76470 * 8 6 5 10 10 N 1.47428 * 104.72191 * 37.29390 * 9 8 6 11 11 C 1.36934 * 125.64625 * 155.82001 * 10 9 8 12 12 H 1.08000 * 120.00002 * 199.35118 * 11 10 9 13 13 C 1.38813 * 120.00294 * 19.35530 * 11 10 9 14 14 N 1.31619 * 119.99752 * 28.44934 * 13 11 10 15 15 Si 1.86793 * 120.00000 * 208.44877 * 13 11 10 16 16 H 1.48508 * 109.47093 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.47407 * 299.99871 * 15 13 11 18 18 H 1.48505 * 109.46955 * 60.00270 * 15 13 11 19 19 C 1.47022 * 108.70233 * 335.55567 * 10 9 8 20 20 C 1.34940 * 107.92582 * 359.58528 * 5 4 3 21 21 H 1.08994 * 109.47502 * 270.00144 * 1 2 3 22 22 H 1.09004 * 109.46615 * 30.00264 * 1 2 3 23 23 H 1.09002 * 109.47431 * 149.99340 * 1 2 3 24 24 H 1.07995 * 125.90320 * 359.97438 * 3 2 1 25 25 H 1.09001 * 111.00148 * 201.00195 * 8 6 5 26 26 H 1.09000 * 111.00574 * 324.85416 * 8 6 5 27 27 H 1.08998 * 110.49586 * 278.45155 * 9 8 6 28 28 H 1.08998 * 110.34505 * 156.06126 * 9 8 6 29 29 H 0.97005 * 120.00233 * 5.66187 * 14 13 11 30 30 H 1.08997 * 109.88218 * 120.70621 * 19 10 9 31 31 H 1.08999 * 109.88029 * 241.87097 * 19 10 9 32 32 H 1.08003 * 126.12925 * 180.22336 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1309 0.0000 4 7 3.5755 0.7301 0.0057 5 7 3.5844 -0.6708 0.0000 6 6 4.7745 -1.5250 0.0005 7 1 5.6329 -0.9882 -0.4033 8 6 5.0775 -2.0500 1.4287 9 6 4.1195 -3.2668 1.5203 10 7 4.1386 -3.8610 0.1712 11 6 3.8467 -5.1644 -0.1309 12 1 4.1788 -5.5892 -1.0666 13 6 3.1239 -5.9396 0.7655 14 7 2.2639 -5.3704 1.5834 15 14 3.3717 -7.7904 0.8110 16 1 2.4888 -8.3827 1.8479 17 1 3.0351 -8.3677 -0.5151 18 1 4.7887 -8.0922 1.1371 19 6 4.5167 -2.8210 -0.7967 20 6 2.3031 -1.0942 0.0000 21 1 -0.3634 0.0000 1.0276 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3634 -0.8899 -0.5139 24 1 1.9952 2.1577 -0.0004 25 1 6.1185 -2.3606 1.5181 26 1 4.8287 -1.3016 2.1811 27 1 3.1116 -2.9405 1.7769 28 1 4.4858 -3.9831 2.2556 29 1 2.0744 -4.4223 1.5049 30 1 5.4228 -3.1179 -1.3248 31 1 3.7055 -2.6638 -1.5076 32 1 1.9723 -2.1223 -0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336392821.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:33 Heat of formation + Delta-G solvation = 78.812102 kcal Electronic energy + Delta-G solvation = -15305.721812 eV Core-core repulsion = 12881.797341 eV Total energy + Delta-G solvation = -2423.924471 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.31873 -39.34522 -35.31705 -33.28080 -32.17289 -30.98196 -29.42422 -27.38023 -26.12348 -23.29629 -22.36034 -21.15497 -20.95258 -19.64639 -17.92607 -16.88157 -15.92970 -15.79841 -15.60765 -15.38580 -14.99716 -14.26620 -14.08982 -13.79527 -13.67474 -13.46116 -12.85068 -12.71714 -12.63585 -12.54083 -12.28037 -12.13599 -11.90271 -11.64142 -11.55858 -10.56053 -10.38396 -9.26910 -9.09436 -8.37508 -5.42040 0.89604 1.49206 1.57598 1.64769 1.83828 1.85415 2.60168 3.14061 3.28516 3.49013 3.57205 3.84410 3.94671 4.05674 4.28766 4.31566 4.44287 4.58738 4.67766 4.73323 4.80326 4.91473 4.92877 4.95872 5.11146 5.20468 5.29358 5.62933 5.81240 6.05481 6.26174 6.75251 6.80878 7.62204 8.19239 8.93902 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037701 B = 0.008569 C = 0.007569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.514224 B = 3266.654533 C = 3698.311243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.256 4.256 3 C 0.051 3.949 4 N -0.323 5.323 5 N -0.363 5.363 6 C 0.154 3.846 7 H 0.134 0.866 8 C -0.129 4.129 9 C 0.147 3.853 10 N -0.616 5.616 11 C -0.352 4.352 12 H 0.062 0.938 13 C -0.071 4.071 14 N -0.938 5.938 15 Si 1.116 2.884 16 H -0.292 1.292 17 H -0.274 1.274 18 H -0.280 1.280 19 C 0.126 3.874 20 C 0.053 3.947 21 H 0.063 0.937 22 H 0.087 0.913 23 H 0.050 0.950 24 H 0.218 0.782 25 H 0.107 0.893 26 H 0.079 0.921 27 H 0.005 0.995 28 H 0.026 0.974 29 H 0.255 0.745 30 H 0.063 0.937 31 H 0.020 0.980 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 10.141 -2.526 10.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.267 4.267 3 C -0.135 4.135 4 N -0.143 5.143 5 N -0.145 5.145 6 C 0.051 3.949 7 H 0.152 0.848 8 C -0.168 4.168 9 C 0.022 3.978 10 N -0.344 5.344 11 C -0.480 4.480 12 H 0.079 0.921 13 C -0.268 4.268 14 N -0.579 5.579 15 Si 0.940 3.060 16 H -0.218 1.218 17 H -0.200 1.200 18 H -0.206 1.206 19 C 0.001 3.999 20 C -0.093 4.093 21 H 0.082 0.918 22 H 0.106 0.894 23 H 0.069 0.931 24 H 0.235 0.765 25 H 0.126 0.874 26 H 0.098 0.902 27 H 0.023 0.977 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.308 8.929 -1.790 9.394 hybrid contribution -0.651 0.807 -0.753 1.282 sum 1.657 9.736 -2.543 10.198 Atomic orbital electron populations 1.20069 0.87638 1.02747 1.01996 1.20501 0.98455 0.91395 1.16393 1.24310 0.89137 1.00878 0.99186 1.77190 1.22577 0.88796 1.25766 1.48680 1.05148 1.04308 1.56380 1.22279 0.85730 0.89161 0.97686 0.84794 1.23198 1.01344 0.96951 0.95302 1.21488 0.95487 0.93176 0.87661 1.44746 1.81447 1.06542 1.01630 1.19953 1.33539 0.86662 1.07858 0.92062 1.27166 0.93114 1.09655 0.96910 1.70916 1.30255 1.13356 1.43421 0.82846 0.76248 0.70427 0.76480 1.21835 1.20000 1.20587 1.21775 0.98864 0.87031 0.92278 1.22335 0.85283 0.99877 1.01855 0.91806 0.89399 0.93074 0.76518 0.87419 0.90240 0.97730 0.95526 0.93453 0.91913 0.96213 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.67 10.37 71.24 0.74 -0.93 16 2 C -0.26 -8.15 6.10 -20.14 -0.12 -8.27 16 3 C 0.05 1.45 11.96 85.23 1.02 2.47 16 4 N -0.32 -10.93 12.58 -57.03 -0.72 -11.65 16 5 N -0.36 -13.24 3.62 -321.87 -1.16 -14.41 16 6 C 0.15 5.31 4.16 46.18 0.19 5.50 16 7 H 0.13 3.86 8.14 -2.39 -0.02 3.84 16 8 C -0.13 -4.53 6.79 32.06 0.22 -4.31 16 9 C 0.15 6.84 4.87 86.93 0.42 7.26 16 10 N -0.62 -30.49 3.26 -691.53 -2.26 -32.74 16 11 C -0.35 -19.57 10.00 84.03 0.84 -18.73 16 12 H 0.06 3.38 7.97 -2.91 -0.02 3.36 16 13 C -0.07 -4.04 5.10 84.86 0.43 -3.60 16 14 N -0.94 -56.81 13.01 21.65 0.28 -56.53 16 15 Si 1.12 50.40 30.00 68.60 2.06 52.46 16 16 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 19 C 0.13 5.13 6.31 86.73 0.55 5.68 16 20 C 0.05 2.03 9.06 83.54 0.76 2.79 16 21 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 23 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.22 4.19 8.06 -2.91 -0.02 4.17 16 25 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 26 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.00 0.25 5.81 -2.39 -0.01 0.24 16 28 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 29 H 0.26 15.69 6.19 -92.70 -0.57 15.12 16 30 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.02 0.87 7.40 -2.39 -0.02 0.85 16 32 H 0.14 6.35 7.50 -2.91 -0.02 6.33 16 Total: -1.00 -66.31 266.50 4.54 -61.77 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 1.29 Total: 13.24 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 5.05 Total: -12.15 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -3.86 Total: -115.33 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.06 Total: 52.46 kcal Total: -66.31 4.54 -61.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336392821.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.582 kcal (2) G-P(sol) polarization free energy of solvation -66.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds