Wall clock time and date at job start Sun Mar 29 2020 22:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39872 * 126.03910 * 2 1 4 4 N 1.30842 * 108.19764 * 179.81755 * 3 2 1 5 5 N 1.40076 * 108.20657 * 0.44422 * 4 3 2 6 6 C 1.46509 * 126.03825 * 179.73880 * 5 4 3 7 7 H 1.09003 * 110.87867 * 28.85333 * 6 5 4 8 8 C 1.55152 * 111.00478 * 264.97634 * 6 5 4 9 9 C 1.54330 * 102.94050 * 277.42396 * 8 6 5 10 10 N 1.47020 * 107.27220 * 337.80874 * 9 8 6 11 11 C 1.36934 * 125.65343 * 178.98332 * 10 9 8 12 12 H 1.07997 * 120.00228 * 179.97438 * 11 10 9 13 13 C 1.38811 * 119.99614 * 359.97438 * 11 10 9 14 14 N 1.31622 * 120.00274 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00108 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46979 * 89.99831 * 15 13 11 17 17 H 1.48499 * 109.47494 * 209.99976 * 15 13 11 18 18 H 1.48496 * 109.47322 * 330.00043 * 15 13 11 19 19 C 1.47432 * 108.70033 * 358.93845 * 10 9 8 20 20 C 1.34951 * 107.93039 * 359.71277 * 5 4 3 21 21 H 1.09002 * 109.47152 * 269.68807 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.68908 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.68888 * 1 2 3 24 24 H 1.07999 * 125.89879 * 0.02562 * 3 2 1 25 25 H 1.09002 * 110.72007 * 35.78139 * 8 6 5 26 26 H 1.08999 * 110.72306 * 158.88512 * 8 6 5 27 27 H 1.09002 * 109.88184 * 97.22043 * 9 8 6 28 28 H 1.08991 * 109.88178 * 218.23522 * 9 8 6 29 29 H 0.96997 * 120.00211 * 180.02562 * 14 13 11 30 30 H 1.08995 * 110.36512 * 265.28916 * 19 10 9 31 31 H 1.09004 * 110.36174 * 142.96753 * 19 10 9 32 32 H 1.07999 * 126.12932 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7301 0.0040 5 7 3.5844 -0.6706 -0.0037 6 6 4.7746 -1.5249 -0.0079 7 1 5.6102 -1.0295 0.4866 8 6 5.1530 -1.9443 -1.4530 9 6 4.2199 -3.1442 -1.7201 10 7 3.8186 -3.6846 -0.4130 11 6 2.9752 -4.7445 -0.2124 12 1 2.7420 -5.0666 0.7917 13 6 2.4200 -5.4051 -1.2997 14 7 2.7038 -5.0123 -2.5235 15 14 1.2699 -6.8515 -1.0262 16 1 -0.1280 -6.3604 -0.9266 17 1 1.3827 -7.7962 -2.1664 18 1 1.6407 -7.5477 0.2319 19 6 4.4756 -2.8969 0.6460 20 6 2.3031 -1.0942 -0.0060 21 1 -0.3633 -0.0056 1.0277 22 1 -0.3633 -0.8872 -0.5187 23 1 -0.3633 0.8928 -0.5090 24 1 1.9951 2.1578 0.0004 25 1 4.9511 -1.1351 -2.1548 26 1 6.1989 -2.2466 -1.5055 27 1 3.3392 -2.8136 -2.2706 28 1 4.7500 -3.9059 -2.2918 29 1 2.3155 -5.4737 -3.2832 30 1 5.4023 -3.3788 0.9575 31 1 3.8063 -2.7736 1.4975 32 1 1.9724 -2.1223 -0.0119 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336392822.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:36 Heat of formation + Delta-G solvation = 102.247962 kcal Electronic energy + Delta-G solvation = -15399.539050 eV Core-core repulsion = 12976.630834 eV Total energy + Delta-G solvation = -2422.908216 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.72418 -37.43773 -33.21593 -31.64291 -30.48822 -29.34194 -27.57332 -25.86533 -24.37534 -21.72797 -20.32066 -19.59156 -19.30972 -17.09733 -16.20783 -14.94008 -14.55045 -14.23594 -13.84507 -13.43445 -12.93300 -12.70149 -12.46774 -12.14086 -12.00694 -11.81595 -11.39536 -11.03731 -10.95385 -10.80613 -10.39487 -10.24726 -10.13245 -10.00953 -9.76374 -8.82089 -8.68929 -7.74115 -6.98183 -5.81954 -3.18247 2.52372 3.07250 3.31836 3.34499 3.40085 3.41802 4.39977 4.93830 5.25498 5.33416 5.38908 5.49816 5.56152 5.65685 5.85529 5.94574 6.10123 6.10886 6.22615 6.33480 6.38334 6.42996 6.48507 6.53778 6.73073 7.22555 7.44372 7.49295 7.70536 7.72884 8.11911 8.30045 9.09177 9.68745 10.32498 11.28962 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029184 B = 0.010207 C = 0.008449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.214355 B = 2742.589022 C = 3313.269153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.273 4.273 3 C 0.040 3.960 4 N -0.317 5.317 5 N -0.349 5.349 6 C 0.141 3.859 7 H 0.099 0.901 8 C -0.156 4.156 9 C 0.176 3.824 10 N -0.604 5.604 11 C -0.238 4.238 12 H 0.080 0.920 13 C -0.002 4.002 14 N -0.917 5.917 15 Si 0.912 3.088 16 H -0.287 1.287 17 H -0.290 1.290 18 H -0.281 1.281 19 C 0.126 3.874 20 C 0.095 3.905 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.173 0.827 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.254 0.746 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 7.459 4.035 8.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.284 4.284 3 C -0.145 4.145 4 N -0.138 5.138 5 N -0.130 5.130 6 C 0.038 3.962 7 H 0.117 0.883 8 C -0.195 4.195 9 C 0.051 3.949 10 N -0.331 5.331 11 C -0.366 4.366 12 H 0.098 0.902 13 C -0.199 4.199 14 N -0.563 5.563 15 Si 0.742 3.258 16 H -0.214 1.214 17 H -0.216 1.216 18 H -0.206 1.206 19 C -0.001 4.001 20 C -0.053 4.053 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.190 0.810 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.341 7.567 3.895 8.615 hybrid contribution -1.361 -1.036 -0.043 1.711 sum -0.020 6.531 3.852 7.582 Atomic orbital electron populations 1.19947 0.89988 1.01622 1.00753 1.20085 0.96852 0.92049 1.19425 1.23589 0.90352 0.99224 1.01383 1.77173 1.21210 0.89764 1.25643 1.48490 1.05572 1.03648 1.55248 1.22498 0.84654 0.90160 0.98912 0.88309 1.23357 1.01035 1.00513 0.94631 1.21195 0.95276 0.90702 0.87715 1.44548 1.53517 1.35062 0.99994 1.19018 1.19265 1.05328 0.92956 0.90235 1.24820 1.00363 0.99521 0.95227 1.69965 1.47002 1.42254 0.97120 0.86121 0.80660 0.81903 0.77071 1.21400 1.21635 1.20634 1.21906 0.97312 0.88078 0.92811 1.22816 0.83821 1.00956 0.97698 0.92913 0.92222 0.92657 0.81017 0.91460 0.90631 0.93271 0.93454 0.93560 0.93872 0.93241 0.79711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.37 36.01 0.37 -0.57 16 2 C -0.27 -4.82 6.10 -105.05 -0.64 -5.46 16 3 C 0.04 0.68 11.96 -17.36 -0.21 0.47 16 4 N -0.32 -6.03 12.58 30.63 0.39 -5.64 16 5 N -0.35 -6.80 3.67 -52.78 -0.19 -7.00 16 6 C 0.14 2.57 4.27 -65.78 -0.28 2.29 16 7 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 8 C -0.16 -2.94 6.65 -24.90 -0.17 -3.11 16 9 C 0.18 4.13 5.00 -3.06 -0.02 4.11 16 10 N -0.60 -14.40 2.22 -170.07 -0.38 -14.78 16 11 C -0.24 -6.23 10.06 -15.06 -0.15 -6.38 16 12 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 13 C 0.00 -0.06 5.49 -17.43 -0.10 -0.15 16 14 N -0.92 -25.95 10.31 55.49 0.57 -25.37 16 15 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 19 C 0.13 2.48 6.21 -2.53 -0.02 2.46 16 20 C 0.09 1.89 9.84 -17.22 -0.17 1.72 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.17 2.24 8.06 -52.49 -0.42 1.82 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.05 1.31 7.38 -51.93 -0.38 0.92 16 28 H 0.05 1.23 7.50 -51.93 -0.39 0.84 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.97 7.87 -51.93 -0.41 0.56 16 32 H 0.19 4.08 6.75 -52.49 -0.35 3.73 16 LS Contribution 266.30 15.07 4.01 4.01 Total: -1.00 -29.05 266.30 -6.46 -35.50 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -4.46 Total: 1.60 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.37 Total: -4.62 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.39 Total: -52.79 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.05 -6.46 -35.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336392822.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.752 kcal (2) G-P(sol) polarization free energy of solvation -29.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds