Wall clock time and date at job start Sun Mar 29 2020 22:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39872 * 126.03910 * 2 1 4 4 N 1.30842 * 108.19764 * 179.81755 * 3 2 1 5 5 N 1.40076 * 108.20657 * 0.44422 * 4 3 2 6 6 C 1.46509 * 126.03825 * 179.73880 * 5 4 3 7 7 H 1.09003 * 110.87867 * 28.85333 * 6 5 4 8 8 C 1.55152 * 111.00478 * 264.97634 * 6 5 4 9 9 C 1.54330 * 102.94050 * 277.42396 * 8 6 5 10 10 N 1.47020 * 107.27220 * 337.80874 * 9 8 6 11 11 C 1.36934 * 125.65343 * 178.98332 * 10 9 8 12 12 H 1.07997 * 120.00228 * 179.97438 * 11 10 9 13 13 C 1.38811 * 119.99614 * 359.97438 * 11 10 9 14 14 N 1.31622 * 120.00274 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00108 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46979 * 89.99831 * 15 13 11 17 17 H 1.48499 * 109.47494 * 209.99976 * 15 13 11 18 18 H 1.48496 * 109.47322 * 330.00043 * 15 13 11 19 19 C 1.47432 * 108.70033 * 358.93845 * 10 9 8 20 20 C 1.34951 * 107.93039 * 359.71277 * 5 4 3 21 21 H 1.09002 * 109.47152 * 269.68807 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.68908 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.68888 * 1 2 3 24 24 H 1.07999 * 125.89879 * 0.02562 * 3 2 1 25 25 H 1.09002 * 110.72007 * 35.78139 * 8 6 5 26 26 H 1.08999 * 110.72306 * 158.88512 * 8 6 5 27 27 H 1.09002 * 109.88184 * 97.22043 * 9 8 6 28 28 H 1.08991 * 109.88178 * 218.23522 * 9 8 6 29 29 H 0.96997 * 120.00211 * 180.02562 * 14 13 11 30 30 H 1.08995 * 110.36512 * 265.28916 * 19 10 9 31 31 H 1.09004 * 110.36174 * 142.96753 * 19 10 9 32 32 H 1.07999 * 126.12932 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7301 0.0040 5 7 3.5844 -0.6706 -0.0037 6 6 4.7746 -1.5249 -0.0079 7 1 5.6102 -1.0295 0.4866 8 6 5.1530 -1.9443 -1.4530 9 6 4.2199 -3.1442 -1.7201 10 7 3.8186 -3.6846 -0.4130 11 6 2.9752 -4.7445 -0.2124 12 1 2.7420 -5.0666 0.7917 13 6 2.4200 -5.4051 -1.2997 14 7 2.7038 -5.0123 -2.5235 15 14 1.2699 -6.8515 -1.0262 16 1 -0.1280 -6.3604 -0.9266 17 1 1.3827 -7.7962 -2.1664 18 1 1.6407 -7.5477 0.2319 19 6 4.4756 -2.8969 0.6460 20 6 2.3031 -1.0942 -0.0060 21 1 -0.3633 -0.0056 1.0277 22 1 -0.3633 -0.8872 -0.5187 23 1 -0.3633 0.8928 -0.5090 24 1 1.9951 2.1578 0.0004 25 1 4.9511 -1.1351 -2.1548 26 1 6.1989 -2.2466 -1.5055 27 1 3.3392 -2.8136 -2.2706 28 1 4.7500 -3.9059 -2.2918 29 1 2.3155 -5.4737 -3.2832 30 1 5.4023 -3.3788 0.9575 31 1 3.8063 -2.7736 1.4975 32 1 1.9724 -2.1223 -0.0119 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336392822.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:36 Heat of formation + Delta-G solvation = 85.383207 kcal Electronic energy + Delta-G solvation = -15400.270361 eV Core-core repulsion = 12976.630834 eV Total energy + Delta-G solvation = -2423.639526 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.15442 -39.10362 -35.01184 -33.16900 -32.02731 -31.07346 -29.18588 -27.38268 -26.16102 -23.19636 -22.13105 -21.02579 -20.81935 -19.00590 -17.74391 -16.79225 -16.19060 -15.68039 -15.60475 -15.01959 -14.35166 -14.16369 -13.91154 -13.80663 -13.51003 -13.32867 -12.91980 -12.82756 -12.67949 -12.32139 -12.12193 -12.05019 -11.92566 -11.69119 -11.43494 -10.73932 -10.24679 -9.15256 -8.93913 -7.86961 -5.23899 1.05376 1.47218 1.47687 1.56352 1.66173 1.96275 2.47430 3.32810 3.43561 3.69600 3.74918 4.02485 4.13452 4.22548 4.47078 4.54969 4.59812 4.72310 4.78499 4.90285 4.94146 4.98848 5.08276 5.26329 5.40017 5.43398 5.56166 5.70303 5.92272 6.13675 6.23651 6.88702 7.05861 7.71687 8.34803 9.22945 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029184 B = 0.010207 C = 0.008449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.214355 B = 2742.589022 C = 3313.269153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.270 4.270 3 C 0.047 3.953 4 N -0.330 5.330 5 N -0.360 5.360 6 C 0.147 3.853 7 H 0.132 0.868 8 C -0.141 4.141 9 C 0.189 3.811 10 N -0.618 5.618 11 C -0.240 4.240 12 H 0.086 0.914 13 C -0.059 4.059 14 N -0.948 5.948 15 Si 0.974 3.026 16 H -0.286 1.286 17 H -0.298 1.298 18 H -0.268 1.268 19 C 0.127 3.873 20 C 0.065 3.935 21 H 0.068 0.932 22 H 0.045 0.955 23 H 0.081 0.919 24 H 0.214 0.786 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.006 0.994 28 H 0.014 0.986 29 H 0.246 0.754 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.197 8.872 5.372 10.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.281 4.281 3 C -0.139 4.139 4 N -0.151 5.151 5 N -0.141 5.141 6 C 0.044 3.956 7 H 0.150 0.850 8 C -0.180 4.180 9 C 0.064 3.936 10 N -0.345 5.345 11 C -0.368 4.368 12 H 0.103 0.897 13 C -0.253 4.253 14 N -0.597 5.597 15 Si 0.803 3.197 16 H -0.213 1.213 17 H -0.224 1.224 18 H -0.193 1.193 19 C 0.001 3.999 20 C -0.082 4.082 21 H 0.087 0.913 22 H 0.064 0.936 23 H 0.099 0.901 24 H 0.230 0.770 25 H 0.084 0.916 26 H 0.122 0.878 27 H 0.025 0.975 28 H 0.032 0.968 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.458 8.988 5.272 10.522 hybrid contribution -1.420 -1.406 -0.417 2.041 sum 0.038 7.582 4.855 9.003 Atomic orbital electron populations 1.20023 0.87910 1.02259 1.01969 1.20510 0.98391 0.91630 1.17580 1.24233 0.89351 1.00729 0.99564 1.77141 1.22476 0.89278 1.26220 1.48600 1.05441 1.04038 1.56023 1.22539 0.85356 0.89614 0.98043 0.85038 1.23210 1.01333 0.98135 0.95307 1.20837 0.94119 0.91474 0.87157 1.44707 1.53526 1.34991 1.01306 1.19369 1.18927 1.05430 0.93104 0.89662 1.25588 1.02322 1.02254 0.95112 1.70182 1.48397 1.43439 0.97659 0.85140 0.78713 0.78900 0.76954 1.21286 1.22439 1.19301 1.22054 0.97621 0.88547 0.91712 1.22616 0.84982 1.00440 1.00151 0.91314 0.93560 0.90063 0.76989 0.91605 0.87753 0.97527 0.96772 0.94456 0.91682 0.93302 0.82617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.71 10.37 71.24 0.74 -0.98 16 2 C -0.27 -9.12 6.10 -20.14 -0.12 -9.24 16 3 C 0.05 1.44 11.96 85.24 1.02 2.46 16 4 N -0.33 -11.78 12.58 -57.02 -0.72 -12.50 16 5 N -0.36 -13.59 3.67 -320.90 -1.18 -14.76 16 6 C 0.15 5.09 4.27 46.38 0.20 5.29 16 7 H 0.13 3.74 8.14 -2.39 -0.02 3.72 16 8 C -0.14 -5.17 6.65 31.78 0.21 -4.95 16 9 C 0.19 9.15 5.00 86.73 0.43 9.58 16 10 N -0.62 -29.86 2.22 -691.99 -1.54 -31.39 16 11 C -0.24 -12.73 10.06 84.03 0.85 -11.89 16 12 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 13 C -0.06 -3.26 5.49 84.86 0.47 -2.80 16 14 N -0.95 -55.86 10.31 21.65 0.22 -55.64 16 15 Si 0.97 44.64 29.55 68.60 2.03 46.66 16 16 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 17 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 C 0.13 4.83 6.21 86.85 0.54 5.37 16 20 C 0.07 2.60 9.84 83.54 0.82 3.42 16 21 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 24 H 0.21 4.59 8.06 -2.91 -0.02 4.56 16 25 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 27 H 0.01 0.36 7.38 -2.39 -0.02 0.35 16 28 H 0.01 0.76 7.50 -2.39 -0.02 0.75 16 29 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.05 1.87 7.87 -2.38 -0.02 1.85 16 32 H 0.16 7.14 6.75 -2.91 -0.02 7.12 16 Total: -1.00 -64.04 266.30 5.06 -58.98 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 1.09 Total: 12.38 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 5.15 Total: -3.73 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -3.21 Total: -114.29 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -64.04 5.06 -58.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336392822.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.363 kcal (2) G-P(sol) polarization free energy of solvation -64.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds