Wall clock time and date at job start Sun Mar 29 2020 21:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48494 * 109.47405 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46955 * 300.00545 * 3 2 1 6 6 H 1.48505 * 109.46860 * 60.00157 * 3 2 1 7 7 C 1.38951 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99761 * 199.05680 * 7 2 1 9 9 N 1.37096 * 120.00043 * 19.05678 * 7 2 1 10 10 C 1.34772 * 120.00032 * 42.96967 * 9 7 2 11 11 O 1.21288 * 120.00093 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99665 * 180.02562 * 10 9 7 13 13 C 1.54637 * 111.07525 * 67.95240 * 12 10 9 14 14 C 1.51105 * 104.72359 * 142.67685 * 13 12 10 15 15 C 1.30529 * 111.10265 * 343.56790 * 14 13 12 16 16 C 1.51096 * 111.10569 * 359.97438 * 15 14 13 17 17 C 1.46503 * 119.99655 * 222.96914 * 9 7 2 18 18 C 1.53000 * 117.50223 * 13.99837 * 17 9 7 19 19 C 1.53005 * 117.49792 * 305.33548 * 17 9 7 20 20 H 0.97006 * 120.00221 * 354.96065 * 1 2 3 21 21 H 1.09005 * 110.91126 * 303.95951 * 12 10 9 22 22 H 1.08995 * 110.37969 * 23.86966 * 13 12 10 23 23 H 1.08999 * 110.38501 * 261.49489 * 13 12 10 24 24 H 1.07996 * 124.44450 * 163.83126 * 14 13 12 25 25 H 1.08001 * 124.43864 * 179.97438 * 15 14 13 26 26 H 1.09003 * 110.38542 * 135.25505 * 16 15 14 27 27 H 1.09005 * 110.38106 * 257.50903 * 16 15 14 28 28 H 1.09001 * 115.54839 * 159.67428 * 17 9 7 29 29 H 1.09002 * 117.49620 * 359.97438 * 18 17 9 30 30 H 1.09000 * 117.50277 * 145.02205 * 18 17 9 31 31 H 1.08999 * 117.49990 * 214.97839 * 19 17 9 32 32 H 1.09001 * 117.49630 * 359.97438 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0445 -1.2291 0.3049 9 7 1.3796 -2.3579 -0.3887 10 6 0.5760 -2.3564 -1.4706 11 8 0.4090 -1.3335 -2.1006 12 6 -0.1160 -3.6255 -1.8969 13 6 -1.1864 -4.0490 -0.8644 14 6 -2.3217 -4.6032 -1.6934 15 6 -2.2101 -4.2435 -2.9432 16 6 -0.9823 -3.3890 -3.1559 17 6 1.5809 -3.5933 0.3726 18 6 2.2238 -3.4740 1.7558 19 6 3.0209 -4.0630 0.5892 20 1 -0.4851 0.8368 0.0738 21 1 0.6057 -4.4254 -2.0628 22 1 -1.5221 -3.1857 -0.2898 23 1 -0.7905 -4.8174 -0.2005 24 1 -3.1226 -5.2130 -1.3023 25 1 -2.9044 -4.5205 -3.7228 26 1 -0.4473 -3.7089 -4.0501 27 1 -1.2605 -2.3381 -3.2364 28 1 0.8169 -4.3588 0.2371 29 1 2.4974 -2.4763 2.0993 30 1 1.8831 -4.1612 2.5303 31 1 3.2041 -5.1374 0.5966 32 1 3.8184 -3.4530 0.1648 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336444093.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:26 Heat of formation + Delta-G solvation = 3.747172 kcal Electronic energy + Delta-G solvation = -15535.143830 eV Core-core repulsion = 13075.671549 eV Total energy + Delta-G solvation = -2459.472282 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.93221 -38.68020 -37.51387 -34.72528 -32.89234 -30.41453 -29.06786 -26.85879 -23.64602 -23.01205 -22.25170 -20.76373 -19.49003 -18.34652 -17.78945 -17.14700 -16.64624 -16.01604 -15.62765 -14.97348 -14.75715 -13.86196 -13.63417 -13.51889 -13.02022 -12.91711 -12.83376 -12.65929 -12.37956 -12.22505 -12.05955 -12.00460 -11.88233 -11.69822 -11.13183 -10.72663 -9.92671 -9.72529 -8.93582 -8.20316 -5.96742 1.32904 1.40899 1.42888 1.48453 2.23820 2.40642 3.06991 3.13949 3.40196 3.72830 3.85323 4.09251 4.12477 4.30792 4.38030 4.42088 4.53766 4.71317 4.84674 4.88504 4.90697 5.00650 5.08837 5.13740 5.30448 5.38975 5.49082 5.50663 5.62783 6.11296 6.20382 7.04214 7.22747 7.72684 8.39028 8.88302 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026578 B = 0.011934 C = 0.009205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.251876 B = 2345.621603 C = 3040.990550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.021 3.979 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.357 4.357 8 H 0.076 0.924 9 N -0.442 5.442 10 C 0.474 3.526 11 O -0.589 6.589 12 C -0.105 4.105 13 C -0.084 4.084 14 C -0.164 4.164 15 C -0.164 4.164 16 C -0.089 4.089 17 C 0.041 3.959 18 C -0.176 4.176 19 C -0.183 4.183 20 H 0.258 0.742 21 H 0.109 0.891 22 H 0.045 0.955 23 H 0.095 0.905 24 H 0.155 0.845 25 H 0.151 0.849 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.136 0.864 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 -11.781 0.253 11.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.185 4.185 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.223 1.223 6 H -0.198 1.198 7 C -0.485 4.485 8 H 0.094 0.906 9 N -0.161 5.161 10 C 0.264 3.736 11 O -0.471 6.471 12 C -0.127 4.127 13 C -0.121 4.121 14 C -0.182 4.182 15 C -0.182 4.182 16 C -0.126 4.126 17 C -0.064 4.064 18 C -0.214 4.214 19 C -0.222 4.222 20 H 0.067 0.933 21 H 0.127 0.873 22 H 0.063 0.937 23 H 0.113 0.887 24 H 0.173 0.827 25 H 0.169 0.831 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.154 0.846 29 H 0.095 0.905 30 H 0.136 0.864 31 H 0.144 0.856 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.090 -11.127 -0.113 11.181 hybrid contribution 0.340 1.450 0.058 1.491 sum -0.750 -9.676 -0.055 9.706 Atomic orbital electron populations 1.69956 1.07970 1.27362 1.45089 1.26026 0.95501 1.02534 0.94471 0.85294 0.79306 0.79027 0.77085 1.18204 1.22282 1.19752 1.19109 0.95053 0.85526 1.48783 0.90637 1.42994 1.43330 1.07274 1.22546 1.20549 0.82420 0.89875 0.80792 1.90456 1.64276 1.36241 1.56087 1.22079 0.97608 0.95712 0.97305 1.21316 0.93852 0.99648 0.97300 1.23428 0.99264 1.00533 0.94955 1.23420 0.98261 0.98076 0.98435 1.21220 0.94951 0.99446 0.97031 1.22256 0.96755 0.90415 0.96947 1.23134 1.04347 1.02217 0.91653 1.23307 0.94665 1.01501 1.02677 0.93318 0.87348 0.93671 0.88709 0.82748 0.83096 0.90495 0.92945 0.84638 0.90501 0.86390 0.85642 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.10 11.68 21.66 0.25 -53.85 16 2 C 0.02 1.22 4.36 84.93 0.37 1.59 16 3 Si 0.97 46.96 29.60 68.60 2.03 48.99 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.36 -20.18 7.66 84.04 0.64 -19.54 16 8 H 0.08 4.15 7.48 -2.91 -0.02 4.13 16 9 N -0.44 -22.63 2.87 -613.12 -1.76 -24.39 16 10 C 0.47 24.97 6.26 87.66 0.55 25.52 16 11 O -0.59 -36.87 13.17 -3.05 -0.04 -36.91 16 12 C -0.11 -4.15 2.56 -10.42 -0.03 -4.17 16 13 C -0.08 -2.88 5.38 30.53 0.16 -2.72 16 14 C -0.16 -4.56 10.78 26.26 0.28 -4.27 16 15 C -0.16 -4.71 10.77 26.26 0.28 -4.43 16 16 C -0.09 -3.30 6.18 30.53 0.19 -3.11 16 17 C 0.04 1.60 5.86 44.99 0.26 1.86 16 18 C -0.18 -6.14 9.85 30.62 0.30 -5.84 16 19 C -0.18 -5.93 10.12 30.62 0.31 -5.62 16 20 H 0.26 15.47 8.32 -92.70 -0.77 14.70 16 21 H 0.11 3.68 8.02 -2.38 -0.02 3.66 16 22 H 0.04 1.94 7.88 -2.39 -0.02 1.92 16 23 H 0.09 2.67 6.48 -2.39 -0.02 2.65 16 24 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 25 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 26 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.05 2.40 6.97 -2.38 -0.02 2.38 16 28 H 0.14 4.50 4.68 -2.39 -0.01 4.48 16 29 H 0.08 3.16 7.06 -2.39 -0.02 3.14 16 30 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 32 H 0.07 2.63 7.99 -2.39 -0.02 2.61 16 Total: -1.00 -73.95 263.79 4.92 -69.03 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 1.11 Total: 17.84 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 3.33 Total: -20.72 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -1.51 Total: -78.24 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -0.04 Total: -36.91 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -73.95 4.92 -69.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336444093.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.780 kcal (2) G-P(sol) polarization free energy of solvation -73.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds