Wall clock time and date at job start Sun Mar 29 2020 22:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00311 * 2 1 4 4 H 1.48497 * 109.47151 * 269.72762 * 3 2 1 5 5 H 1.48500 * 109.46743 * 29.72484 * 3 2 1 6 6 H 1.48499 * 109.47212 * 149.72281 * 3 2 1 7 7 C 1.38811 * 119.99796 * 179.72293 * 2 1 3 8 8 H 1.08001 * 120.00294 * 205.84632 * 7 2 1 9 9 N 1.36936 * 120.00212 * 25.85089 * 7 2 1 10 10 C 1.46929 * 120.62839 * 27.52222 * 9 7 2 11 11 C 1.53630 * 108.54105 * 126.37570 * 10 9 7 12 12 C 1.53036 * 109.24100 * 54.85378 * 11 10 9 13 13 C 1.50701 * 109.45605 * 178.49060 * 12 11 10 14 14 N 1.30502 * 125.64899 * 215.09148 * 13 12 11 15 15 C 1.34132 * 109.25489 * 180.02562 * 14 13 12 16 16 C 1.34662 * 108.02132 * 359.97438 * 15 14 13 17 17 N 1.35039 * 125.65190 * 34.79088 * 13 12 11 18 18 H 0.96998 * 126.39623 * 359.97438 * 17 13 12 19 19 C 1.53032 * 109.54203 * 298.51188 * 12 11 10 20 20 C 1.46929 * 120.63102 * 207.81031 * 9 7 2 21 21 H 0.96996 * 120.00373 * 184.33221 * 1 2 3 22 22 H 1.09003 * 109.58376 * 246.20513 * 10 9 7 23 23 H 1.08993 * 109.58698 * 6.63108 * 10 9 7 24 24 H 1.09004 * 109.62827 * 294.86298 * 11 10 9 25 25 H 1.08998 * 109.42615 * 174.72516 * 11 10 9 26 26 H 1.09003 * 109.46042 * 58.53596 * 12 11 10 27 27 H 1.07998 * 125.98884 * 180.02562 * 15 14 13 28 28 H 1.08005 * 126.59346 * 179.97438 * 16 15 14 29 29 H 1.09001 * 109.50032 * 301.41493 * 19 12 11 30 30 H 1.08997 * 109.52979 * 181.33858 * 19 12 11 31 31 H 1.08992 * 109.58740 * 353.36498 * 20 9 7 32 32 H 1.08997 * 109.58765 * 113.79781 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5035 2.0430 -1.4000 5 1 1.4448 2.6543 0.6942 6 1 3.5448 1.4418 0.7059 7 6 2.0102 -1.2021 0.0058 8 1 3.0092 -1.2470 0.4138 9 7 1.4283 -2.3312 -0.5058 10 6 0.4084 -2.2361 -1.5592 11 6 0.8362 -3.1271 -2.7353 12 6 1.0835 -4.5492 -2.2268 13 6 1.4677 -5.4360 -3.3831 14 7 1.1447 -6.6933 -3.5175 15 6 1.6578 -7.1616 -4.6649 16 6 2.3234 -6.1563 -5.2646 17 7 2.1983 -5.0598 -4.4547 18 1 2.5675 -4.1780 -4.6187 19 6 2.2155 -4.5350 -1.1971 20 6 1.8074 -3.6604 -0.0074 21 1 -0.4850 -0.8376 0.0635 22 1 -0.5515 -2.5759 -1.1701 23 1 0.3240 -1.2023 -1.8939 24 1 1.7518 -2.7345 -3.1779 25 1 0.0458 -3.1412 -3.4857 26 1 0.1747 -4.9319 -1.7623 27 1 1.5543 -8.1682 -5.0421 28 1 2.8513 -6.2047 -6.2056 29 1 3.1181 -4.1293 -1.6542 30 1 2.4075 -5.5511 -0.8527 31 1 2.6464 -3.5665 0.6819 32 1 0.9593 -4.1139 0.5054 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336552656.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:27 Heat of formation + Delta-G solvation = 65.811356 kcal Electronic energy + Delta-G solvation = -15137.019342 eV Core-core repulsion = 12712.531117 eV Total energy + Delta-G solvation = -2424.488225 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.92524 -37.70691 -33.77395 -32.32389 -30.97158 -29.94650 -28.38231 -25.12045 -22.72107 -22.31072 -21.28005 -20.29293 -19.16420 -17.85459 -17.25339 -14.89459 -14.55283 -14.25660 -14.17351 -13.69009 -13.56169 -13.46141 -13.30126 -12.83214 -12.19211 -11.69343 -11.07442 -10.73119 -10.65289 -10.43010 -10.17597 -10.07272 -9.94092 -9.88014 -9.83357 -9.33305 -8.40119 -8.22645 -6.91731 -6.11872 -3.25516 2.19399 3.28275 3.29403 3.48163 3.49470 3.66733 4.55909 4.58320 5.09365 5.18425 5.28877 5.40773 5.43140 5.48216 5.70799 5.83511 5.88017 6.11187 6.20208 6.30206 6.36903 6.42236 6.52730 6.67365 6.77173 6.86567 6.97818 7.11736 7.49790 7.98750 8.25955 8.54700 9.08646 9.81914 10.26642 11.18557 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.053784 B = 0.006879 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.471724 B = 4069.242821 C = 4190.950429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.024 4.024 3 Si 1.068 2.932 4 H -0.294 1.294 5 H -0.289 1.289 6 H -0.292 1.292 7 C -0.352 4.352 8 H 0.057 0.943 9 N -0.600 5.600 10 C 0.152 3.848 11 C -0.132 4.132 12 C 0.001 3.999 13 C 0.233 3.767 14 N -0.499 5.499 15 C -0.032 4.032 16 C -0.070 4.070 17 N -0.564 5.564 18 H 0.419 0.581 19 C -0.121 4.121 20 C 0.147 3.853 21 H 0.270 0.730 22 H 0.022 0.978 23 H 0.082 0.918 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.166 0.834 28 H 0.172 0.828 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.331 -8.618 -8.833 13.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.227 4.227 3 Si 0.898 3.102 4 H -0.221 1.221 5 H -0.216 1.216 6 H -0.219 1.219 7 C -0.481 4.481 8 H 0.075 0.925 9 N -0.324 5.324 10 C 0.026 3.974 11 C -0.172 4.172 12 C -0.019 4.019 13 C -0.031 4.031 14 N -0.219 5.219 15 C -0.180 4.180 16 C -0.204 4.204 17 N -0.166 5.166 18 H 0.257 0.743 19 C -0.161 4.161 20 C 0.021 3.979 21 H 0.081 0.919 22 H 0.040 0.960 23 H 0.100 0.900 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.183 0.817 28 H 0.189 0.811 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 3.699 -7.454 -8.317 11.765 hybrid contribution 0.953 -0.996 -0.827 1.608 sum 4.652 -8.450 -9.144 13.291 Atomic orbital electron populations 1.70761 1.06590 1.30304 1.47899 1.25851 0.96509 1.01488 0.98804 0.83464 0.74526 0.75775 0.76442 1.22117 1.21553 1.21865 1.20010 0.98112 0.88397 1.41559 0.92530 1.44176 1.47017 1.01365 1.39876 1.21018 0.90721 0.98843 0.86802 1.22252 1.00695 0.94262 1.00035 1.19672 1.00082 0.92401 0.89763 1.23648 0.95928 0.92326 0.91224 1.70278 1.24548 1.07900 1.19146 1.22306 1.02060 0.99730 0.93943 1.22678 1.09679 0.88064 1.00006 1.43320 1.42236 1.12728 1.18349 0.74301 1.22045 0.96903 0.99844 0.97322 1.20910 0.97812 0.86226 0.92941 0.91939 0.96039 0.89958 0.92612 0.92705 0.88719 0.81711 0.81054 0.92515 0.92308 0.92322 0.96180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 12.46 55.49 0.69 -26.33 16 2 C -0.02 -0.68 4.66 -17.43 -0.08 -0.76 16 3 Si 1.07 24.87 29.99 -169.99 -5.10 19.77 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.35 -9.63 9.48 -15.06 -0.14 -9.77 16 8 H 0.06 1.56 7.95 -52.49 -0.42 1.15 16 9 N -0.60 -14.67 2.85 -172.05 -0.49 -15.16 16 10 C 0.15 3.44 4.72 -3.48 -0.02 3.43 16 11 C -0.13 -2.38 5.09 -26.39 -0.13 -2.52 16 12 C 0.00 0.02 2.62 -91.74 -0.24 -0.22 16 13 C 0.23 3.81 6.87 -155.42 -1.07 2.74 16 14 N -0.50 -8.59 11.25 -10.82 -0.12 -8.71 16 15 C -0.03 -0.45 11.87 -17.81 -0.21 -0.66 16 16 C -0.07 -0.84 12.04 -16.56 -0.20 -1.04 16 17 N -0.56 -7.57 5.91 -10.23 -0.06 -7.63 16 18 H 0.42 4.80 8.19 -40.82 -0.33 4.46 16 19 C -0.12 -2.14 5.34 -26.61 -0.14 -2.28 16 20 C 0.15 3.07 6.51 -3.71 -0.02 3.05 16 21 H 0.27 8.01 6.69 -40.82 -0.27 7.74 16 22 H 0.02 0.50 7.87 -51.93 -0.41 0.09 16 23 H 0.08 2.08 6.31 -51.93 -0.33 1.76 16 24 H 0.06 0.98 7.49 -51.93 -0.39 0.59 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 27 H 0.17 1.81 8.06 -52.49 -0.42 1.38 16 28 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 262.24 15.07 3.95 3.95 Total: -1.00 -31.37 262.24 -7.70 -39.07 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.32 Total: 3.09 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -2.26 Total: -8.05 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.02 Total: -57.84 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.10 Total: 19.77 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.37 -7.70 -39.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336552656.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.880 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds