Wall clock time and date at job start Sun Mar 29 2020 22:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00311 * 2 1 4 4 H 1.48497 * 109.47151 * 269.72762 * 3 2 1 5 5 H 1.48500 * 109.46743 * 29.72484 * 3 2 1 6 6 H 1.48499 * 109.47212 * 149.72281 * 3 2 1 7 7 C 1.38811 * 119.99796 * 179.72293 * 2 1 3 8 8 H 1.08001 * 120.00294 * 205.84632 * 7 2 1 9 9 N 1.36936 * 120.00212 * 25.85089 * 7 2 1 10 10 C 1.46929 * 120.62839 * 27.52222 * 9 7 2 11 11 C 1.53630 * 108.54105 * 126.37570 * 10 9 7 12 12 C 1.53036 * 109.24100 * 54.85378 * 11 10 9 13 13 C 1.50701 * 109.45605 * 178.49060 * 12 11 10 14 14 N 1.30502 * 125.64899 * 215.09148 * 13 12 11 15 15 C 1.34132 * 109.25489 * 180.02562 * 14 13 12 16 16 C 1.34662 * 108.02132 * 359.97438 * 15 14 13 17 17 N 1.35039 * 125.65190 * 34.79088 * 13 12 11 18 18 H 0.96998 * 126.39623 * 359.97438 * 17 13 12 19 19 C 1.53032 * 109.54203 * 298.51188 * 12 11 10 20 20 C 1.46929 * 120.63102 * 207.81031 * 9 7 2 21 21 H 0.96996 * 120.00373 * 184.33221 * 1 2 3 22 22 H 1.09003 * 109.58376 * 246.20513 * 10 9 7 23 23 H 1.08993 * 109.58698 * 6.63108 * 10 9 7 24 24 H 1.09004 * 109.62827 * 294.86298 * 11 10 9 25 25 H 1.08998 * 109.42615 * 174.72516 * 11 10 9 26 26 H 1.09003 * 109.46042 * 58.53596 * 12 11 10 27 27 H 1.07998 * 125.98884 * 180.02562 * 15 14 13 28 28 H 1.08005 * 126.59346 * 179.97438 * 16 15 14 29 29 H 1.09001 * 109.50032 * 301.41493 * 19 12 11 30 30 H 1.08997 * 109.52979 * 181.33858 * 19 12 11 31 31 H 1.08992 * 109.58740 * 353.36498 * 20 9 7 32 32 H 1.08997 * 109.58765 * 113.79781 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5035 2.0430 -1.4000 5 1 1.4448 2.6543 0.6942 6 1 3.5448 1.4418 0.7059 7 6 2.0102 -1.2021 0.0058 8 1 3.0092 -1.2470 0.4138 9 7 1.4283 -2.3312 -0.5058 10 6 0.4084 -2.2361 -1.5592 11 6 0.8362 -3.1271 -2.7353 12 6 1.0835 -4.5492 -2.2268 13 6 1.4677 -5.4360 -3.3831 14 7 1.1447 -6.6933 -3.5175 15 6 1.6578 -7.1616 -4.6649 16 6 2.3234 -6.1563 -5.2646 17 7 2.1983 -5.0598 -4.4547 18 1 2.5675 -4.1780 -4.6187 19 6 2.2155 -4.5350 -1.1971 20 6 1.8074 -3.6604 -0.0074 21 1 -0.4850 -0.8376 0.0635 22 1 -0.5515 -2.5759 -1.1701 23 1 0.3240 -1.2023 -1.8939 24 1 1.7518 -2.7345 -3.1779 25 1 0.0458 -3.1412 -3.4857 26 1 0.1747 -4.9319 -1.7623 27 1 1.5543 -8.1682 -5.0421 28 1 2.8513 -6.2047 -6.2056 29 1 3.1181 -4.1293 -1.6542 30 1 2.4075 -5.5511 -0.8527 31 1 2.6464 -3.5665 0.6819 32 1 0.9593 -4.1139 0.5054 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336552656.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:27 Heat of formation + Delta-G solvation = 46.002046 kcal Electronic energy + Delta-G solvation = -15137.878338 eV Core-core repulsion = 12712.531117 eV Total energy + Delta-G solvation = -2425.347222 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.01961 -39.37529 -35.57581 -33.45163 -32.71673 -31.61894 -29.71984 -26.92751 -24.32042 -23.97800 -22.46720 -21.49660 -20.76331 -19.48974 -18.72724 -16.37151 -16.06377 -15.96735 -15.47630 -15.37591 -15.14591 -14.82216 -14.44703 -14.38439 -13.80410 -13.45284 -12.83058 -12.53936 -12.25913 -12.08365 -11.90009 -11.80938 -11.53368 -11.23191 -11.01983 -10.99686 -10.46386 -9.29875 -8.94780 -8.27720 -5.40070 1.14536 1.59749 1.66604 1.84450 2.17424 2.27440 2.65864 3.20193 3.33429 3.54357 3.80758 3.96628 4.22547 4.27383 4.35018 4.49281 4.55251 4.61388 4.73651 4.83770 4.96500 4.98908 5.03627 5.10530 5.16404 5.23445 5.41416 5.83920 5.86176 6.38592 6.47847 7.04719 7.17118 7.77256 8.21781 8.99741 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.053784 B = 0.006879 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.471724 B = 4069.242821 C = 4190.950429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.074 4.074 3 Si 1.118 2.882 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.357 4.357 8 H 0.052 0.948 9 N -0.617 5.617 10 C 0.157 3.843 11 C -0.115 4.115 12 C 0.012 3.988 13 C 0.208 3.792 14 N -0.530 5.530 15 C -0.060 4.060 16 C -0.044 4.044 17 N -0.557 5.557 18 H 0.429 0.571 19 C -0.105 4.105 20 C 0.144 3.856 21 H 0.254 0.746 22 H 0.007 0.993 23 H 0.051 0.949 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.188 0.812 28 H 0.217 0.783 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.912 -9.291 -10.684 15.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.271 4.271 3 Si 0.942 3.058 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.199 1.199 7 C -0.486 4.486 8 H 0.069 0.931 9 N -0.342 5.342 10 C 0.031 3.969 11 C -0.154 4.154 12 C -0.009 4.009 13 C -0.056 4.056 14 N -0.251 5.251 15 C -0.207 4.207 16 C -0.178 4.178 17 N -0.161 5.161 18 H 0.268 0.732 19 C -0.145 4.145 20 C 0.018 3.982 21 H 0.064 0.936 22 H 0.025 0.975 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.205 0.795 28 H 0.233 0.767 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 5.297 -8.157 -10.175 14.076 hybrid contribution 0.463 -0.893 -0.267 1.041 sum 5.760 -9.049 -10.443 14.970 Atomic orbital electron populations 1.70885 1.07586 1.29373 1.50609 1.27191 0.96529 1.04809 0.98554 0.82804 0.73948 0.71922 0.77091 1.20784 1.22217 1.19913 1.20250 0.97865 0.89608 1.40894 0.93056 1.44409 1.47176 1.01945 1.40680 1.20883 0.89974 0.98041 0.88004 1.22018 1.01430 0.93830 0.98156 1.19387 0.99278 0.91943 0.90284 1.23131 0.98170 0.92264 0.92032 1.70192 1.25394 1.08499 1.20973 1.22834 1.02877 1.01509 0.93484 1.23381 1.07516 0.86529 1.00356 1.43341 1.41398 1.13647 1.17692 0.73160 1.21839 0.97023 0.99583 0.96035 1.21025 0.97486 0.85260 0.94396 0.93564 0.97519 0.93061 0.91751 0.91132 0.89995 0.79458 0.76670 0.92362 0.90964 0.92655 0.96515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.04 12.46 21.65 0.27 -56.77 16 2 C -0.07 -4.18 4.66 84.86 0.40 -3.78 16 3 Si 1.12 50.15 29.99 68.60 2.06 52.21 16 4 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.30 -13.49 7.11 99.48 0.71 -12.79 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.36 -19.71 9.48 84.03 0.80 -18.91 16 8 H 0.05 2.84 7.95 -2.91 -0.02 2.82 16 9 N -0.62 -30.59 2.85 -698.24 -1.99 -32.57 16 10 C 0.16 7.24 4.72 86.51 0.41 7.64 16 11 C -0.11 -4.03 5.09 30.82 0.16 -3.87 16 12 C 0.01 0.39 2.62 -11.52 -0.03 0.36 16 13 C 0.21 6.38 6.87 138.13 0.95 7.33 16 14 N -0.53 -17.27 11.25 -188.14 -2.12 -19.39 16 15 C -0.06 -1.49 11.87 83.52 0.99 -0.50 16 16 C -0.04 -0.87 12.04 83.08 1.00 0.13 16 17 N -0.56 -13.18 5.91 -186.27 -1.10 -14.28 16 18 H 0.43 8.37 8.19 -92.71 -0.76 7.61 16 19 C -0.10 -3.60 5.34 30.67 0.16 -3.44 16 20 C 0.14 6.01 6.51 86.36 0.56 6.57 16 21 H 0.25 15.73 6.69 -92.71 -0.62 15.11 16 22 H 0.01 0.33 7.87 -2.39 -0.02 0.31 16 23 H 0.05 2.67 6.31 -2.39 -0.02 2.65 16 24 H 0.06 2.15 7.49 -2.38 -0.02 2.13 16 25 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 27 H 0.19 3.53 8.06 -2.91 -0.02 3.50 16 28 H 0.22 2.24 8.06 -2.91 -0.02 2.21 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.05 2.31 7.93 -2.39 -0.02 2.29 16 32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -68.26 262.24 3.02 -65.24 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.50 Total: 14.04 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 5.39 Total: -8.47 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -4.94 Total: -123.02 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 2.06 Total: 52.21 kcal Total: -68.26 3.02 -65.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336552656.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.241 kcal (2) G-P(sol) polarization free energy of solvation -68.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds