Wall clock time and date at job start Sun Mar 29 2020 22:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99461 * 2 1 4 4 H 1.48502 * 109.47116 * 269.99615 * 3 2 1 5 5 H 1.48493 * 109.47305 * 29.99963 * 3 2 1 6 6 H 1.48500 * 109.46910 * 149.99727 * 3 2 1 7 7 C 1.37873 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99763 * 180.02562 * 7 2 1 9 9 C 1.50691 * 119.99993 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47189 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47433 * 180.02562 * 10 9 7 12 12 C 1.46857 * 111.00201 * 58.81829 * 11 10 9 13 13 C 1.53531 * 109.90668 * 162.49621 * 12 11 10 14 14 C 1.51017 * 107.65041 * 49.90202 * 13 12 11 15 15 N 1.29843 * 129.17260 * 163.75547 * 14 13 12 16 16 N 1.40392 * 108.08719 * 180.10394 * 15 14 13 17 17 H 0.96999 * 126.00170 * 180.02562 * 16 15 14 18 18 C 1.35274 * 108.00658 * 0.22629 * 16 15 14 19 19 C 1.34366 * 107.60732 * 359.80669 * 18 16 15 20 20 C 1.47329 * 110.99527 * 293.94882 * 11 10 9 21 21 H 0.96998 * 120.00278 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47576 * 60.00383 * 9 7 2 23 23 H 1.09001 * 109.47541 * 299.99634 * 9 7 2 24 24 H 1.08999 * 109.47497 * 59.99449 * 10 9 7 25 25 H 1.09011 * 109.46823 * 299.99809 * 10 9 7 26 26 H 1.08997 * 109.39595 * 282.62831 * 12 11 10 27 27 H 1.09003 * 109.39677 * 42.45218 * 12 11 10 28 28 H 1.09003 * 109.81848 * 290.37206 * 13 12 11 29 29 H 1.08999 * 109.82457 * 169.44123 * 13 12 11 30 30 H 1.07997 * 126.19992 * 179.80880 * 18 16 15 31 31 H 1.08999 * 109.74854 * 56.82084 * 20 11 10 32 32 H 1.08997 * 109.74994 * 296.08607 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4990 0.0005 10 6 2.2454 -3.6619 0.0018 11 7 1.5110 -4.9342 0.0012 12 6 0.6344 -5.0353 -1.1727 13 6 0.2225 -6.4979 -1.3931 14 6 -0.2818 -7.0352 -0.0750 15 7 -0.9859 -8.1003 0.1611 16 7 -1.2095 -8.1771 1.5450 17 1 -1.7069 -8.8716 2.0045 18 6 -0.6135 -7.1100 2.1247 19 6 -0.0329 -6.3897 1.1504 20 6 0.7621 -5.1120 1.2575 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8715 -3.6038 0.8922 25 1 2.8727 -3.6046 -0.8878 26 1 -0.2567 -4.4285 -1.0124 27 1 1.1653 -4.6735 -2.0532 28 1 1.0838 -7.0785 -1.7237 29 1 -0.5688 -6.5504 -2.1408 30 1 -0.6058 -6.8789 3.1797 31 1 0.0868 -4.2694 1.4061 32 1 1.4573 -5.1798 2.0942 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336553571.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:44 Heat of formation + Delta-G solvation = 71.454997 kcal Electronic energy + Delta-G solvation = -14829.495271 eV Core-core repulsion = 12405.251772 eV Total energy + Delta-G solvation = -2424.243499 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.20057 -37.57079 -33.48561 -32.37440 -31.01984 -29.78214 -28.27459 -25.27515 -23.88352 -22.45764 -20.81780 -20.16674 -18.28071 -17.46899 -16.42427 -15.17366 -14.80517 -14.54885 -14.43333 -13.74823 -13.30617 -13.18104 -12.58076 -12.20468 -12.02146 -11.73620 -11.46798 -11.04554 -10.89472 -10.75324 -10.57253 -10.17811 -9.89466 -9.73991 -9.22541 -9.13794 -8.37955 -8.22059 -7.42328 -6.01355 -4.04280 2.06515 2.97106 2.99752 3.31376 3.37826 3.41095 4.42831 4.54940 4.77438 4.99058 5.33972 5.36858 5.60565 5.71137 5.83406 5.93862 6.04556 6.14879 6.24118 6.33784 6.39934 6.46076 6.69342 6.84596 6.93145 7.42862 7.54609 7.56540 7.70943 7.85145 7.89376 8.00869 8.42471 9.03151 9.60105 11.09663 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.055571 B = 0.005990 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.741813 B = 4673.237997 C = 4804.284483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.056 0.944 9 C -0.011 4.011 10 C 0.058 3.942 11 N -0.543 5.543 12 C 0.059 3.941 13 C -0.034 4.034 14 C 0.095 3.905 15 N -0.298 5.298 16 N -0.494 5.494 17 H 0.435 0.565 18 C 0.055 3.945 19 C -0.224 4.224 20 C 0.129 3.871 21 H 0.260 0.740 22 H 0.019 0.981 23 H 0.017 0.983 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.175 0.825 31 H 0.055 0.945 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.051 -12.958 2.541 13.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.049 4.049 10 C -0.069 4.069 11 N -0.266 5.266 12 C -0.070 4.070 13 C -0.074 4.074 14 C -0.075 4.075 15 N -0.120 5.120 16 N -0.203 5.203 17 H 0.278 0.722 18 C -0.090 4.090 19 C -0.235 4.235 20 C 0.000 4.000 21 H 0.070 0.930 22 H 0.037 0.963 23 H 0.036 0.964 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.192 0.808 31 H 0.073 0.927 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.415 -14.217 2.020 14.429 hybrid contribution -0.142 1.966 0.863 2.152 sum -1.557 -12.250 2.883 12.681 Atomic orbital electron populations 1.69964 1.06101 1.26601 1.50819 1.25021 0.94810 0.99277 0.95259 0.86601 0.79865 0.83469 0.78118 1.20657 1.21297 1.19824 1.21167 0.93048 0.90927 1.50636 0.92553 1.19695 0.95011 0.92788 0.97409 1.22336 0.96777 0.86481 1.01264 1.62218 1.27472 1.35702 1.01204 1.22016 0.96646 0.93857 0.94446 1.20303 1.00236 0.96271 0.90564 1.22367 0.95589 0.92296 0.97205 1.76840 1.21827 1.21306 0.92009 1.46284 1.46339 1.22426 1.05268 0.72182 1.21863 0.98132 0.89827 0.99200 1.20287 1.08772 1.02181 0.92281 1.20460 0.94664 0.91847 0.93034 0.93027 0.96308 0.96430 0.91913 0.91726 0.93666 0.90087 0.89522 0.90108 0.80835 0.92686 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.42 9.11 -34.45 -0.31 -14.74 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C -0.01 -0.27 4.35 -27.89 -0.12 -0.39 16 10 C 0.06 1.19 5.21 -3.82 -0.02 1.17 16 11 N -0.54 -9.90 4.78 -235.29 -1.12 -11.03 16 12 C 0.06 1.02 4.50 -3.57 -0.02 1.00 16 13 C -0.03 -0.51 6.54 -27.45 -0.18 -0.69 16 14 C 0.09 1.55 7.20 -82.34 -0.59 0.96 16 15 N -0.30 -4.70 12.67 33.77 0.43 -4.28 16 16 N -0.49 -6.15 7.38 30.33 0.22 -5.93 16 17 H 0.44 3.70 8.96 -182.38 -1.63 2.06 16 18 C 0.05 0.70 11.96 -17.40 -0.21 0.49 16 19 C -0.22 -3.57 5.97 -104.97 -0.63 -4.20 16 20 C 0.13 2.23 5.62 -4.66 -0.03 2.20 16 21 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 22 H 0.02 0.50 6.79 -51.93 -0.35 0.15 16 23 H 0.02 0.47 6.49 -51.93 -0.34 0.13 16 24 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 25 H 0.06 1.30 8.10 -51.92 -0.42 0.88 16 26 H 0.05 0.87 7.23 -51.93 -0.38 0.49 16 27 H 0.08 1.33 7.94 -51.93 -0.41 0.92 16 28 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.17 1.56 8.06 -52.49 -0.42 1.13 16 31 H 0.06 1.07 6.36 -51.93 -0.33 0.74 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 263.42 15.07 3.97 3.97 Total: -1.00 -32.02 263.42 -8.51 -40.52 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.52 Total: -1.04 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -2.20 Total: -12.65 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.26 Total: -47.24 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.02 -8.51 -40.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336553571.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.979 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds