Wall clock time and date at job start Sun Mar 29 2020 22:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99461 * 2 1 4 4 H 1.48502 * 109.47116 * 269.99615 * 3 2 1 5 5 H 1.48493 * 109.47305 * 29.99963 * 3 2 1 6 6 H 1.48500 * 109.46910 * 149.99727 * 3 2 1 7 7 C 1.37873 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99763 * 180.02562 * 7 2 1 9 9 C 1.50691 * 119.99993 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47189 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47433 * 180.02562 * 10 9 7 12 12 C 1.46857 * 111.00201 * 58.81829 * 11 10 9 13 13 C 1.53531 * 109.90668 * 162.49621 * 12 11 10 14 14 C 1.51017 * 107.65041 * 49.90202 * 13 12 11 15 15 N 1.29843 * 129.17260 * 163.75547 * 14 13 12 16 16 N 1.40392 * 108.08719 * 180.10394 * 15 14 13 17 17 H 0.96999 * 126.00170 * 180.02562 * 16 15 14 18 18 C 1.35274 * 108.00658 * 0.22629 * 16 15 14 19 19 C 1.34366 * 107.60732 * 359.80669 * 18 16 15 20 20 C 1.47329 * 110.99527 * 293.94882 * 11 10 9 21 21 H 0.96998 * 120.00278 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47576 * 60.00383 * 9 7 2 23 23 H 1.09001 * 109.47541 * 299.99634 * 9 7 2 24 24 H 1.08999 * 109.47497 * 59.99449 * 10 9 7 25 25 H 1.09011 * 109.46823 * 299.99809 * 10 9 7 26 26 H 1.08997 * 109.39595 * 282.62831 * 12 11 10 27 27 H 1.09003 * 109.39677 * 42.45218 * 12 11 10 28 28 H 1.09003 * 109.81848 * 290.37206 * 13 12 11 29 29 H 1.08999 * 109.82457 * 169.44123 * 13 12 11 30 30 H 1.07997 * 126.19992 * 179.80880 * 18 16 15 31 31 H 1.08999 * 109.74854 * 56.82084 * 20 11 10 32 32 H 1.08997 * 109.74994 * 296.08607 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4990 0.0005 10 6 2.2454 -3.6619 0.0018 11 7 1.5110 -4.9342 0.0012 12 6 0.6344 -5.0353 -1.1727 13 6 0.2225 -6.4979 -1.3931 14 6 -0.2818 -7.0352 -0.0750 15 7 -0.9859 -8.1003 0.1611 16 7 -1.2095 -8.1771 1.5450 17 1 -1.7069 -8.8716 2.0045 18 6 -0.6135 -7.1100 2.1247 19 6 -0.0329 -6.3897 1.1504 20 6 0.7621 -5.1120 1.2575 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8715 -3.6038 0.8922 25 1 2.8727 -3.6046 -0.8878 26 1 -0.2567 -4.4285 -1.0124 27 1 1.1653 -4.6735 -2.0532 28 1 1.0838 -7.0785 -1.7237 29 1 -0.5688 -6.5504 -2.1408 30 1 -0.6058 -6.8789 3.1797 31 1 0.0868 -4.2694 1.4061 32 1 1.4573 -5.1798 2.0942 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336553571.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:44 Heat of formation + Delta-G solvation = 48.616681 kcal Electronic energy + Delta-G solvation = -14830.485614 eV Core-core repulsion = 12405.251772 eV Total energy + Delta-G solvation = -2425.233843 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.33974 -39.04154 -35.34478 -33.90651 -32.40992 -31.15115 -29.89165 -26.86619 -25.45703 -24.12778 -22.03662 -21.65562 -19.54964 -18.68603 -18.45890 -16.60836 -16.36785 -16.16255 -15.88342 -15.13946 -14.85415 -14.54049 -14.18427 -13.78489 -13.57086 -13.15949 -13.03967 -12.78088 -12.54412 -12.48808 -12.03648 -11.83133 -11.63069 -11.35016 -11.23515 -10.53079 -10.33171 -9.45560 -8.97790 -8.17771 -6.29544 0.98140 1.42111 1.42917 1.54181 1.77505 2.02637 2.42437 3.10206 3.15159 3.59291 3.91838 4.18355 4.32032 4.46787 4.53934 4.66915 4.70465 4.75341 4.87078 4.93342 4.97137 5.06683 5.08902 5.20853 5.52647 5.61322 5.64186 5.80489 6.08045 6.26996 6.39377 6.52105 6.75896 6.88891 7.39952 8.93146 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.055571 B = 0.005990 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.741813 B = 4673.237997 C = 4804.284483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.539 4.539 8 H 0.064 0.936 9 C -0.001 4.001 10 C 0.073 3.927 11 N -0.536 5.536 12 C 0.062 3.938 13 C -0.027 4.027 14 C 0.077 3.923 15 N -0.320 5.320 16 N -0.478 5.478 17 H 0.453 0.547 18 C 0.082 3.918 19 C -0.264 4.264 20 C 0.135 3.865 21 H 0.262 0.738 22 H -0.007 1.007 23 H -0.008 1.008 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.015 0.985 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.216 0.784 31 H 0.024 0.976 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.234 -13.711 3.247 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.577 4.577 8 H 0.082 0.918 9 C -0.039 4.039 10 C -0.055 4.055 11 N -0.259 5.259 12 C -0.067 4.067 13 C -0.066 4.066 14 C -0.092 4.092 15 N -0.143 5.143 16 N -0.189 5.189 17 H 0.301 0.699 18 C -0.065 4.065 19 C -0.276 4.276 20 C 0.006 3.994 21 H 0.071 0.929 22 H 0.011 0.989 23 H 0.010 0.990 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.033 0.967 27 H 0.103 0.897 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.233 0.767 31 H 0.042 0.958 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.603 -15.013 2.723 15.270 hybrid contribution -0.465 2.133 0.699 2.293 sum -1.068 -12.880 3.422 13.369 Atomic orbital electron populations 1.70108 1.07907 1.27640 1.51915 1.25962 0.95659 1.03344 0.94750 0.85462 0.78746 0.78488 0.78447 1.19866 1.21062 1.18508 1.21640 0.93677 0.92159 1.50233 0.91801 1.19556 0.95210 0.94236 0.94886 1.22108 0.95809 0.85799 1.01758 1.62273 1.27908 1.33562 1.02142 1.22013 0.95201 0.95347 0.94149 1.20247 1.01205 0.94326 0.90822 1.22552 0.96097 0.92781 0.97751 1.76776 1.22284 1.21384 0.93829 1.46332 1.45483 1.22656 1.04384 0.69948 1.22413 0.95291 0.88298 1.00464 1.20308 1.11190 1.02611 0.93448 1.20352 0.94403 0.91821 0.92821 0.92938 0.98890 0.98996 0.91322 0.91143 0.96659 0.89709 0.88154 0.88698 0.76739 0.95842 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.09 13.29 21.45 0.28 -56.80 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.54 -30.25 9.11 25.60 0.23 -30.01 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.00 -0.03 4.35 29.85 0.13 0.10 16 10 C 0.07 3.01 5.21 86.30 0.45 3.46 16 11 N -0.54 -19.65 4.78 -898.32 -4.30 -23.94 16 12 C 0.06 2.16 4.50 86.49 0.39 2.55 16 13 C -0.03 -0.78 6.54 30.13 0.20 -0.58 16 14 C 0.08 2.44 7.20 43.56 0.31 2.76 16 15 N -0.32 -9.59 12.67 -47.07 -0.60 -10.19 16 16 N -0.48 -10.63 7.38 -57.96 -0.43 -11.06 16 17 H 0.45 6.30 8.96 -213.13 -1.91 4.39 16 18 C 0.08 1.87 11.96 83.28 1.00 2.87 16 19 C -0.26 -8.16 5.97 -20.09 -0.12 -8.28 16 20 C 0.13 4.69 5.62 85.53 0.48 5.17 16 21 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 22 H -0.01 -0.41 6.79 -2.39 -0.02 -0.43 16 23 H -0.01 -0.47 6.49 -2.39 -0.02 -0.48 16 24 H 0.07 2.74 8.12 -2.39 -0.02 2.72 16 25 H 0.07 2.81 8.10 -2.38 -0.02 2.80 16 26 H 0.02 0.61 7.23 -2.39 -0.02 0.60 16 27 H 0.08 2.84 7.94 -2.39 -0.02 2.82 16 28 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.22 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.02 0.96 6.36 -2.39 -0.02 0.94 16 32 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -69.43 263.42 -0.26 -69.69 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -0.79 Total: 7.76 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 3.53 Total: -21.48 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -5.03 Total: -101.99 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -69.43 -0.26 -69.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336553571.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.310 kcal (2) G-P(sol) polarization free energy of solvation -69.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds