Wall clock time and date at job start Sun Mar 29 2020 22:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47345 * 2 1 4 4 N 1.46908 * 109.46999 * 119.99522 * 2 1 3 5 5 C 1.46905 * 110.99686 * 275.00506 * 4 2 1 6 6 C 1.53010 * 109.46820 * 179.97438 * 5 4 2 7 7 C 1.50691 * 109.46926 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00526 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99940 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99768 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 119.99731 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47108 * 90.00225 * 11 9 7 13 13 H 1.48502 * 109.47113 * 210.00006 * 11 9 7 14 14 H 1.48503 * 109.47332 * 330.00206 * 11 9 7 15 15 C 1.50696 * 109.47364 * 239.99326 * 2 1 3 16 16 C 1.38387 * 120.00300 * 85.02775 * 15 2 1 17 17 N 1.32127 * 119.99994 * 179.72464 * 16 15 2 18 18 C 1.32149 * 119.99872 * 0.50887 * 17 16 15 19 19 C 1.38346 * 120.00371 * 359.48627 * 18 17 16 20 20 N 1.32127 * 120.00369 * 265.00080 * 15 2 1 21 21 H 1.09003 * 109.46901 * 60.00650 * 1 2 3 22 22 H 1.08997 * 109.47589 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47486 * 300.00911 * 1 2 3 24 24 H 1.00893 * 111.00425 * 151.04891 * 4 2 1 25 25 H 1.09001 * 109.46549 * 299.98891 * 5 4 2 26 26 H 1.08996 * 109.47558 * 59.99736 * 5 4 2 27 27 H 1.09001 * 109.46525 * 299.99381 * 6 5 4 28 28 H 1.09002 * 109.46927 * 59.99285 * 6 5 4 29 29 H 0.96999 * 119.99558 * 180.02562 * 10 9 7 30 30 H 1.07999 * 119.99913 * 359.97438 * 16 15 2 31 31 H 1.08002 * 120.00163 * 179.77166 * 18 17 16 32 32 H 1.07999 * 120.00349 * 180.27731 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0822 0.2228 2.3470 6 6 2.5948 -0.5329 3.5747 7 6 2.6597 0.4061 4.7515 8 1 2.3652 1.4386 4.6355 9 6 3.0949 -0.0531 5.9767 10 7 3.1520 0.7666 7.0036 11 14 3.6035 -1.8392 6.1777 12 1 5.0539 -1.9763 5.8895 13 1 3.3319 -2.2775 7.5703 14 1 2.8292 -2.6837 5.2330 15 6 2.0323 -0.7105 -1.2303 16 6 2.1651 -0.0202 -2.4224 17 7 2.6107 -0.6419 -3.4997 18 6 2.9201 -1.9253 -3.4414 19 6 2.7875 -2.6155 -2.2498 20 7 2.3466 -1.9925 -1.1709 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8899 24 1 2.9172 -1.1204 1.0290 25 1 2.7587 1.0463 2.1182 26 1 1.0869 0.6165 2.5525 27 1 1.9180 -1.3562 3.8032 28 1 3.5901 -0.9270 3.3694 29 1 3.4586 0.4436 7.8653 30 1 1.9082 1.0277 -2.4710 31 1 3.2809 -2.4345 -4.3229 32 1 3.0446 -3.6633 -2.2010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379615130.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:01 Heat of formation + Delta-G solvation = 43.192574 kcal Electronic energy + Delta-G solvation = -14322.038028 eV Core-core repulsion = 11896.568978 eV Total energy + Delta-G solvation = -2425.469049 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.24410 -36.96785 -34.27566 -33.40976 -32.01154 -30.19817 -28.41615 -25.19633 -24.78105 -23.60819 -20.82126 -20.38722 -17.65200 -17.15756 -16.67640 -16.32572 -15.29904 -14.88182 -14.29167 -14.20449 -13.57017 -13.19155 -12.96985 -12.59091 -12.23945 -11.85320 -11.66601 -11.38044 -11.35554 -11.22506 -10.88673 -10.04326 -9.89667 -9.78520 -9.36229 -9.21723 -9.11800 -8.51636 -7.92581 -6.02774 -4.00976 0.60854 1.01593 3.34314 3.41717 3.48961 3.55283 3.87645 4.07637 4.23360 4.48684 4.56724 4.72230 5.05296 5.17360 5.29662 5.32142 5.37244 5.40948 5.79137 5.97674 6.15180 6.21136 6.25203 6.37721 6.79563 7.07112 7.19804 7.40518 7.57659 7.69571 7.79612 7.93827 8.54679 9.01210 9.59953 11.10533 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045395 B = 0.005549 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.663761 B = 5044.434744 C = 5406.037204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.134 3.866 3 H 0.062 0.938 4 N -0.676 5.676 5 C 0.071 3.929 6 C -0.009 4.009 7 C -0.521 4.521 8 H 0.071 0.929 9 C 0.067 3.933 10 N -0.904 5.904 11 Si 0.880 3.120 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.262 1.262 15 C 0.086 3.914 16 C 0.051 3.949 17 N -0.438 5.438 18 C 0.035 3.965 19 C 0.053 3.947 20 N -0.416 5.416 21 H 0.052 0.948 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.342 0.658 25 H 0.021 0.979 26 H 0.067 0.933 27 H 0.026 0.974 28 H 0.008 0.992 29 H 0.263 0.737 30 H 0.168 0.832 31 H 0.167 0.833 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.951 -4.575 -19.834 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.023 3.977 3 H 0.080 0.920 4 N -0.309 5.309 5 C -0.057 4.057 6 C -0.047 4.047 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.134 4.134 10 N -0.543 5.543 11 Si 0.708 3.292 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.187 1.187 15 C -0.054 4.054 16 C -0.110 4.110 17 N -0.153 5.153 18 C -0.125 4.125 19 C -0.107 4.107 20 N -0.131 5.131 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.161 0.839 25 H 0.039 0.961 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.185 0.815 31 H 0.184 0.816 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.515 -4.811 -19.475 20.218 hybrid contribution 1.158 -0.408 -0.035 1.228 sum -1.357 -5.219 -19.510 20.241 Atomic orbital electron populations 1.21771 0.92957 1.02811 1.01666 1.20432 0.96530 0.94691 0.86080 0.92008 1.60567 1.34038 1.33318 1.02958 1.22066 1.00242 0.93307 0.90049 1.19532 0.95640 0.96754 0.92757 1.21071 1.44307 0.97653 0.92903 0.91107 1.25000 0.95018 0.97585 0.95779 1.69917 1.47815 1.35357 1.01259 0.86759 0.79234 0.85910 0.77327 1.20439 1.21437 1.18663 1.22548 0.95027 0.91254 0.96618 1.23565 0.96758 1.01663 0.88993 1.68441 1.07513 1.09619 1.29710 1.23747 0.98050 0.91337 0.99332 1.23877 0.95718 1.01791 0.89321 1.68350 1.06541 1.08573 1.29596 0.92916 0.91786 0.91163 0.83876 0.96063 0.91491 0.95521 0.97370 0.92748 0.81486 0.81559 0.81361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.40 37.15 0.35 -1.35 16 2 C 0.13 1.86 2.88 -68.87 -0.20 1.66 16 3 H 0.06 0.80 7.77 -51.93 -0.40 0.40 16 4 N -0.68 -11.75 6.06 -107.94 -0.65 -12.41 16 5 C 0.07 1.44 5.42 -3.82 -0.02 1.42 16 6 C -0.01 -0.22 4.30 -27.88 -0.12 -0.34 16 7 C -0.52 -15.01 9.66 -34.44 -0.33 -15.35 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 10 N -0.90 -28.16 13.96 55.43 0.77 -27.38 16 11 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 15 C 0.09 1.12 5.70 -82.41 -0.47 0.65 16 16 C 0.05 0.58 10.90 -17.37 -0.19 0.39 16 17 N -0.44 -5.08 10.50 -13.06 -0.14 -5.22 16 18 C 0.03 0.33 11.22 -17.38 -0.20 0.14 16 19 C 0.05 0.55 11.22 -17.37 -0.20 0.35 16 20 N -0.42 -5.66 9.46 -9.29 -0.09 -5.75 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.07 0.93 7.45 -51.93 -0.39 0.54 16 24 H 0.34 6.04 7.86 -39.30 -0.31 5.73 16 25 H 0.02 0.42 8.06 -51.93 -0.42 0.01 16 26 H 0.07 1.35 7.44 -51.93 -0.39 0.96 16 27 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 28 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 274.49 15.07 4.14 4.14 Total: -1.00 -32.73 274.49 -6.48 -39.20 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.37 Total: 0.45 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -1.47 Total: -10.53 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.11 Total: -50.75 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.73 -6.48 -39.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379615130.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.396 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds