Wall clock time and date at job start Sun Mar 29 2020 22:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47345 * 2 1 4 4 N 1.46908 * 109.46999 * 119.99522 * 2 1 3 5 5 C 1.46905 * 110.99686 * 275.00506 * 4 2 1 6 6 C 1.53010 * 109.46820 * 179.97438 * 5 4 2 7 7 C 1.50691 * 109.46926 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00526 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99940 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99768 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 119.99731 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47108 * 90.00225 * 11 9 7 13 13 H 1.48502 * 109.47113 * 210.00006 * 11 9 7 14 14 H 1.48503 * 109.47332 * 330.00206 * 11 9 7 15 15 C 1.50696 * 109.47364 * 239.99326 * 2 1 3 16 16 C 1.38387 * 120.00300 * 85.02775 * 15 2 1 17 17 N 1.32127 * 119.99994 * 179.72464 * 16 15 2 18 18 C 1.32149 * 119.99872 * 0.50887 * 17 16 15 19 19 C 1.38346 * 120.00371 * 359.48627 * 18 17 16 20 20 N 1.32127 * 120.00369 * 265.00080 * 15 2 1 21 21 H 1.09003 * 109.46901 * 60.00650 * 1 2 3 22 22 H 1.08997 * 109.47589 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47486 * 300.00911 * 1 2 3 24 24 H 1.00893 * 111.00425 * 151.04891 * 4 2 1 25 25 H 1.09001 * 109.46549 * 299.98891 * 5 4 2 26 26 H 1.08996 * 109.47558 * 59.99736 * 5 4 2 27 27 H 1.09001 * 109.46525 * 299.99381 * 6 5 4 28 28 H 1.09002 * 109.46927 * 59.99285 * 6 5 4 29 29 H 0.96999 * 119.99558 * 180.02562 * 10 9 7 30 30 H 1.07999 * 119.99913 * 359.97438 * 16 15 2 31 31 H 1.08002 * 120.00163 * 179.77166 * 18 17 16 32 32 H 1.07999 * 120.00349 * 180.27731 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0822 0.2228 2.3470 6 6 2.5948 -0.5329 3.5747 7 6 2.6597 0.4061 4.7515 8 1 2.3652 1.4386 4.6355 9 6 3.0949 -0.0531 5.9767 10 7 3.1520 0.7666 7.0036 11 14 3.6035 -1.8392 6.1777 12 1 5.0539 -1.9763 5.8895 13 1 3.3319 -2.2775 7.5703 14 1 2.8292 -2.6837 5.2330 15 6 2.0323 -0.7105 -1.2303 16 6 2.1651 -0.0202 -2.4224 17 7 2.6107 -0.6419 -3.4997 18 6 2.9201 -1.9253 -3.4414 19 6 2.7875 -2.6155 -2.2498 20 7 2.3466 -1.9925 -1.1709 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8899 24 1 2.9172 -1.1204 1.0290 25 1 2.7587 1.0463 2.1182 26 1 1.0869 0.6165 2.5525 27 1 1.9180 -1.3562 3.8032 28 1 3.5901 -0.9270 3.3694 29 1 3.4586 0.4436 7.8653 30 1 1.9082 1.0277 -2.4710 31 1 3.2809 -2.4345 -4.3229 32 1 3.0446 -3.6633 -2.2010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379615130.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:00 Heat of formation + Delta-G solvation = 18.791586 kcal Electronic energy + Delta-G solvation = -14323.096134 eV Core-core repulsion = 11896.568978 eV Total energy + Delta-G solvation = -2426.527156 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.08384 -38.23335 -35.56713 -34.88564 -33.61816 -31.48415 -29.87346 -26.47631 -25.75415 -24.97178 -22.28501 -21.86554 -18.98745 -18.43436 -17.99238 -17.33538 -16.42212 -16.30517 -15.78669 -15.38784 -15.07428 -14.67898 -14.35137 -14.00853 -13.60686 -13.08605 -13.00184 -12.91178 -12.52231 -12.36095 -12.15828 -11.83383 -11.74825 -11.67722 -11.41692 -10.76946 -10.20330 -9.99614 -9.30184 -8.30123 -6.34209 -0.19032 0.18086 1.35842 1.38483 1.51995 2.36717 2.73822 3.02752 3.05643 3.09139 3.39995 3.69209 3.79926 4.22815 4.29732 4.36677 4.45685 4.47116 4.58402 4.59090 4.81000 4.92926 4.98196 5.29939 5.31822 5.44568 5.48452 5.63559 6.10326 6.24635 6.37785 6.48236 6.73942 6.86881 7.30843 8.86438 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045395 B = 0.005549 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.663761 B = 5044.434744 C = 5406.037204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.133 3.867 3 H 0.072 0.928 4 N -0.680 5.680 5 C 0.086 3.914 6 C -0.004 4.004 7 C -0.532 4.532 8 H 0.035 0.965 9 C 0.007 3.993 10 N -0.950 5.950 11 Si 0.951 3.049 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.250 1.250 15 C 0.069 3.931 16 C 0.050 3.950 17 N -0.457 5.457 18 C 0.045 3.955 19 C 0.049 3.951 20 N -0.450 5.450 21 H 0.079 0.921 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.341 0.659 25 H 0.019 0.981 26 H 0.063 0.937 27 H 0.021 0.979 28 H 0.013 0.987 29 H 0.267 0.733 30 H 0.188 0.812 31 H 0.204 0.796 32 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.547 -6.214 -21.876 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.022 3.978 3 H 0.090 0.910 4 N -0.312 5.312 5 C -0.043 4.043 6 C -0.041 4.041 7 C -0.571 4.571 8 H 0.054 0.946 9 C -0.190 4.190 10 N -0.590 5.590 11 Si 0.774 3.226 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.174 1.174 15 C -0.071 4.071 16 C -0.109 4.109 17 N -0.172 5.172 18 C -0.115 4.115 19 C -0.111 4.111 20 N -0.166 5.166 21 H 0.098 0.902 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.160 0.840 25 H 0.037 0.963 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.031 0.969 29 H 0.076 0.924 30 H 0.205 0.795 31 H 0.221 0.779 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -2.126 -6.430 -21.537 22.577 hybrid contribution 1.029 0.127 0.513 1.156 sum -1.097 -6.302 -21.025 21.976 Atomic orbital electron populations 1.21732 0.92241 1.02157 1.02536 1.20486 0.97061 0.95040 0.85204 0.91047 1.60477 1.33958 1.33047 1.03683 1.21732 0.99646 0.93073 0.89839 1.19415 0.95893 0.95907 0.92919 1.21400 1.43814 0.97009 0.94840 0.94646 1.25955 0.95047 1.02595 0.95357 1.70059 1.49162 1.37802 1.02013 0.85644 0.79379 0.79861 0.77670 1.19213 1.20808 1.17415 1.22343 0.96650 0.91501 0.96602 1.23798 0.96240 1.02513 0.88372 1.68529 1.08209 1.10717 1.29711 1.24365 0.96110 0.90700 1.00307 1.24399 0.94867 1.03049 0.88768 1.68265 1.07654 1.09131 1.31511 0.90184 0.93126 0.92140 0.84044 0.96294 0.91854 0.96049 0.96867 0.92428 0.79529 0.77899 0.78493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.40 71.98 0.68 -2.44 16 2 C 0.13 3.55 2.88 44.16 0.13 3.68 16 3 H 0.07 1.77 7.77 -2.39 -0.02 1.75 16 4 N -0.68 -23.12 6.06 -495.43 -3.00 -26.13 16 5 C 0.09 3.46 5.42 86.31 0.47 3.93 16 6 C 0.00 -0.17 4.30 29.85 0.13 -0.04 16 7 C -0.53 -31.28 9.66 25.60 0.25 -31.03 16 8 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 9 C 0.01 0.44 5.47 84.66 0.46 0.91 16 10 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 11 Si 0.95 45.51 27.47 68.60 1.88 47.40 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 14 H -0.25 -11.43 6.54 99.48 0.65 -10.77 16 15 C 0.07 1.69 5.70 42.55 0.24 1.93 16 16 C 0.05 1.04 10.90 84.68 0.92 1.96 16 17 N -0.46 -9.43 10.50 -195.22 -2.05 -11.48 16 18 C 0.04 0.72 11.22 84.67 0.95 1.67 16 19 C 0.05 0.89 11.22 84.67 0.95 1.84 16 20 N -0.45 -11.51 9.46 -183.30 -1.73 -13.25 16 21 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.06 1.56 7.45 -2.39 -0.02 1.55 16 24 H 0.34 11.73 7.86 -89.70 -0.71 11.03 16 25 H 0.02 0.76 8.06 -2.39 -0.02 0.74 16 26 H 0.06 2.57 7.44 -2.39 -0.02 2.56 16 27 H 0.02 1.05 7.20 -2.39 -0.02 1.04 16 28 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 29 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 30 H 0.19 2.87 8.06 -2.91 -0.02 2.85 16 31 H 0.20 1.56 8.06 -2.91 -0.02 1.53 16 32 H 0.20 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -70.90 274.49 0.92 -69.98 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.35 Total: 11.02 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 5.18 Total: -17.61 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -6.49 Total: -110.79 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.88 Total: 47.40 kcal Total: -70.90 0.92 -69.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379615130.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.771 kcal (2) G-P(sol) polarization free energy of solvation -70.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds