Wall clock time and date at job start Sun Mar 29 2020 22:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46560 * 2 1 4 4 N 1.46897 * 109.46934 * 239.99605 * 2 1 3 5 5 C 1.46904 * 110.99836 * 85.00020 * 4 2 1 6 6 C 1.52998 * 109.47230 * 179.97438 * 5 4 2 7 7 C 1.50693 * 109.47396 * 180.02562 * 6 5 4 8 8 H 1.08003 * 120.00318 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00497 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99654 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00591 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47055 * 60.00144 * 11 9 7 13 13 H 1.48500 * 109.47130 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46898 * 300.00341 * 11 9 7 15 15 C 1.50696 * 109.47144 * 119.99327 * 2 1 3 16 16 C 1.38387 * 120.00645 * 274.98213 * 15 2 1 17 17 N 1.32127 * 119.99994 * 179.76858 * 16 15 2 18 18 C 1.32149 * 119.99872 * 0.50887 * 17 16 15 19 19 C 1.38346 * 120.00371 * 359.48627 * 18 17 16 20 20 N 1.32127 * 120.00024 * 94.99913 * 15 2 1 21 21 H 1.09001 * 109.47176 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47113 * 300.00259 * 1 2 3 23 23 H 1.09002 * 109.47222 * 60.00027 * 1 2 3 24 24 H 1.00900 * 110.99642 * 208.94596 * 4 2 1 25 25 H 1.09000 * 109.47252 * 299.99687 * 5 4 2 26 26 H 1.09004 * 109.47026 * 59.99972 * 5 4 2 27 27 H 1.09000 * 109.46881 * 300.00077 * 6 5 4 28 28 H 1.08997 * 109.47182 * 59.99484 * 6 5 4 29 29 H 0.97003 * 120.00101 * 179.97438 * 10 9 7 30 30 H 1.07999 * 119.99913 * 0.02562 * 16 15 2 31 31 H 1.08002 * 120.00163 * 179.77166 * 18 17 16 32 32 H 1.07999 * 120.00349 * 180.27731 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0824 0.2225 -2.3469 6 6 2.5961 -0.5330 -3.5742 7 6 2.6611 0.4058 -4.7511 8 1 2.3652 1.4380 -4.6356 9 6 3.0984 -0.0529 -5.9757 10 7 3.4593 -1.3098 -6.1163 11 14 3.1783 1.1106 -7.4348 12 1 4.0988 2.2333 -7.1229 13 1 3.6782 0.3776 -8.6256 14 1 1.8219 1.6460 -7.7158 15 6 2.0324 -0.7102 1.2305 16 6 2.1649 -0.0198 2.4225 17 7 2.6010 -0.6437 3.5024 18 6 2.9202 -1.9247 3.4418 19 6 2.7876 -2.6151 2.2503 20 7 2.3466 -1.9922 1.1713 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 2.9173 -1.1204 -1.0286 25 1 1.0870 0.6162 -2.5526 26 1 2.7588 1.0461 -2.1183 27 1 3.5916 -0.9263 -3.3682 28 1 1.9202 -1.3569 -3.8029 29 1 3.7666 -1.6327 -6.9779 30 1 1.9080 1.0281 2.4710 31 1 3.2801 -2.4338 4.3236 32 1 3.0441 -3.6630 2.2019 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379615131.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:04 Heat of formation + Delta-G solvation = 40.055923 kcal Electronic energy + Delta-G solvation = -14270.008786 eV Core-core repulsion = 11844.403721 eV Total energy + Delta-G solvation = -2425.605065 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.17823 -36.85458 -34.19817 -33.37974 -31.93192 -29.96718 -28.03062 -25.09896 -24.70363 -23.66624 -20.86355 -20.43528 -17.56843 -17.10039 -16.33685 -16.13589 -15.20945 -14.79237 -14.44239 -14.15785 -13.58961 -13.11790 -12.76184 -12.26915 -12.18320 -11.68736 -11.58517 -11.24513 -11.20153 -11.02544 -10.83914 -10.54651 -9.96346 -9.49220 -9.26247 -9.17194 -9.01381 -8.32736 -7.79182 -5.97142 -3.99977 0.67163 1.08112 3.34814 3.39196 3.41374 3.61771 3.94598 4.13947 4.29701 4.47682 4.64361 4.82380 5.11736 5.24254 5.35862 5.38555 5.43560 5.48361 5.85611 6.03352 6.23604 6.33399 6.37882 6.45645 7.00529 7.17675 7.49545 7.72227 7.76350 7.86875 8.00134 8.12359 8.45768 9.07238 9.63541 11.14224 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.055379 B = 0.004964 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.487558 B = 5639.276531 C = 5877.674817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.133 3.867 3 H 0.060 0.940 4 N -0.673 5.673 5 C 0.064 3.936 6 C 0.026 3.974 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.087 3.913 16 C 0.049 3.951 17 N -0.439 5.439 18 C 0.034 3.966 19 C 0.054 3.946 20 N -0.414 5.414 21 H 0.063 0.937 22 H 0.051 0.949 23 H 0.068 0.932 24 H 0.343 0.657 25 H 0.060 0.940 26 H 0.014 0.986 27 H 0.013 0.987 28 H 0.026 0.974 29 H 0.261 0.739 30 H 0.167 0.833 31 H 0.167 0.833 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.562 0.460 17.348 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.022 3.978 3 H 0.077 0.923 4 N -0.306 5.306 5 C -0.064 4.064 6 C -0.011 4.011 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.054 4.054 16 C -0.111 4.111 17 N -0.154 5.154 18 C -0.126 4.126 19 C -0.106 4.106 20 N -0.129 5.129 21 H 0.082 0.918 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.162 0.838 25 H 0.079 0.921 26 H 0.033 0.967 27 H 0.031 0.969 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.184 0.816 31 H 0.184 0.816 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.111 0.078 17.049 17.331 hybrid contribution 0.922 1.029 -0.564 1.492 sum -2.190 1.108 16.485 16.667 Atomic orbital electron populations 1.21767 0.93091 1.02796 1.01481 1.20441 0.96459 0.94604 0.86319 0.92261 1.60564 1.34156 1.33139 1.02696 1.22266 0.99626 0.93493 0.91029 1.19043 0.96262 0.95814 0.89980 1.21138 1.44042 0.96308 0.94633 0.92817 1.25002 0.95417 0.95083 0.98821 1.69971 1.44323 1.14371 1.24539 0.86651 0.78396 0.80877 0.82010 1.20330 1.21279 1.20212 1.22563 0.94912 0.91270 0.96614 1.23552 0.96993 1.01585 0.89000 1.68431 1.07552 1.09626 1.29743 1.23739 0.98087 0.91392 0.99351 1.23891 0.95649 1.01799 0.89301 1.68368 1.06439 1.08589 1.29480 0.91768 0.93048 0.91274 0.83755 0.92138 0.96742 0.96884 0.95526 0.92948 0.81566 0.81587 0.81332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.40 37.16 0.35 -1.42 16 2 C 0.13 1.95 2.88 -68.87 -0.20 1.75 16 3 H 0.06 0.81 7.78 -51.93 -0.40 0.40 16 4 N -0.67 -12.44 6.06 -107.95 -0.65 -13.10 16 5 C 0.06 1.35 5.42 -3.82 -0.02 1.33 16 6 C 0.03 0.70 5.23 -27.89 -0.15 0.55 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 11 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.09 1.20 5.70 -82.41 -0.47 0.73 16 16 C 0.05 0.59 10.90 -17.37 -0.19 0.40 16 17 N -0.44 -5.30 10.50 -13.06 -0.14 -5.43 16 18 C 0.03 0.34 11.22 -17.38 -0.20 0.15 16 19 C 0.05 0.59 11.22 -17.37 -0.20 0.39 16 20 N -0.41 -5.97 9.46 -9.29 -0.09 -6.06 16 21 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.95 7.45 -51.93 -0.39 0.56 16 24 H 0.34 6.55 7.86 -39.29 -0.31 6.24 16 25 H 0.06 1.26 7.44 -51.93 -0.39 0.87 16 26 H 0.01 0.30 8.06 -51.93 -0.42 -0.12 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.17 1.54 8.06 -52.49 -0.42 1.11 16 31 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 278.09 15.07 4.19 4.19 Total: -1.00 -32.27 278.09 -6.85 -39.12 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -4.40 Total: 0.77 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -1.48 Total: -9.78 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.14 Total: -51.06 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.27 -6.85 -39.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379615131.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.177 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds