Wall clock time and date at job start Sun Mar 29 2020 22:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46560 * 2 1 4 4 N 1.46897 * 109.46934 * 239.99605 * 2 1 3 5 5 C 1.46904 * 110.99836 * 85.00020 * 4 2 1 6 6 C 1.52998 * 109.47230 * 179.97438 * 5 4 2 7 7 C 1.50693 * 109.47396 * 180.02562 * 6 5 4 8 8 H 1.08003 * 120.00318 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00497 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99654 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00591 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47055 * 60.00144 * 11 9 7 13 13 H 1.48500 * 109.47130 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46898 * 300.00341 * 11 9 7 15 15 C 1.50696 * 109.47144 * 119.99327 * 2 1 3 16 16 C 1.38387 * 120.00645 * 274.98213 * 15 2 1 17 17 N 1.32127 * 119.99994 * 179.76858 * 16 15 2 18 18 C 1.32149 * 119.99872 * 0.50887 * 17 16 15 19 19 C 1.38346 * 120.00371 * 359.48627 * 18 17 16 20 20 N 1.32127 * 120.00024 * 94.99913 * 15 2 1 21 21 H 1.09001 * 109.47176 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47113 * 300.00259 * 1 2 3 23 23 H 1.09002 * 109.47222 * 60.00027 * 1 2 3 24 24 H 1.00900 * 110.99642 * 208.94596 * 4 2 1 25 25 H 1.09000 * 109.47252 * 299.99687 * 5 4 2 26 26 H 1.09004 * 109.47026 * 59.99972 * 5 4 2 27 27 H 1.09000 * 109.46881 * 300.00077 * 6 5 4 28 28 H 1.08997 * 109.47182 * 59.99484 * 6 5 4 29 29 H 0.97003 * 120.00101 * 179.97438 * 10 9 7 30 30 H 1.07999 * 119.99913 * 0.02562 * 16 15 2 31 31 H 1.08002 * 120.00163 * 179.77166 * 18 17 16 32 32 H 1.07999 * 120.00349 * 180.27731 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0824 0.2225 -2.3469 6 6 2.5961 -0.5330 -3.5742 7 6 2.6611 0.4058 -4.7511 8 1 2.3652 1.4380 -4.6356 9 6 3.0984 -0.0529 -5.9757 10 7 3.4593 -1.3098 -6.1163 11 14 3.1783 1.1106 -7.4348 12 1 4.0988 2.2333 -7.1229 13 1 3.6782 0.3776 -8.6256 14 1 1.8219 1.6460 -7.7158 15 6 2.0324 -0.7102 1.2305 16 6 2.1649 -0.0198 2.4225 17 7 2.6010 -0.6437 3.5024 18 6 2.9202 -1.9247 3.4418 19 6 2.7876 -2.6151 2.2503 20 7 2.3466 -1.9922 1.1713 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 2.9173 -1.1204 -1.0286 25 1 1.0870 0.6162 -2.5526 26 1 2.7588 1.0461 -2.1183 27 1 3.5916 -0.9263 -3.3682 28 1 1.9202 -1.3569 -3.8029 29 1 3.7666 -1.6327 -6.9779 30 1 1.9080 1.0281 2.4710 31 1 3.2801 -2.4338 4.3236 32 1 3.0441 -3.6630 2.2019 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379615131.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:04 Heat of formation + Delta-G solvation = 16.530892 kcal Electronic energy + Delta-G solvation = -14271.028908 eV Core-core repulsion = 11844.403721 eV Total energy + Delta-G solvation = -2426.625187 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.08045 -38.19151 -35.58008 -34.89439 -33.47124 -31.25887 -29.64156 -26.47708 -25.77576 -25.08132 -22.49564 -21.82674 -18.65999 -18.31494 -17.96860 -17.31975 -16.45332 -16.39204 -15.78890 -15.39468 -15.02781 -14.43121 -14.09657 -13.98785 -13.52175 -13.00719 -12.88588 -12.83912 -12.51935 -12.41919 -12.37169 -12.14827 -11.79769 -11.41220 -11.28771 -10.55347 -10.19804 -9.98718 -9.25492 -8.19001 -6.31112 -0.18805 0.18404 1.41186 1.44854 1.52739 2.41455 2.74214 3.04022 3.13838 3.14420 3.40416 3.70493 3.80261 4.22864 4.32574 4.37170 4.45689 4.54463 4.59115 4.62747 4.85002 4.94786 5.07431 5.32035 5.44672 5.45703 5.67557 5.79292 6.12709 6.24008 6.39883 6.49468 6.86290 6.87862 7.38329 8.93173 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.055379 B = 0.004964 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.487558 B = 5639.276531 C = 5877.674817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.133 3.867 3 H 0.074 0.926 4 N -0.682 5.682 5 C 0.083 3.917 6 C 0.033 3.967 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.000 4.000 10 N -0.933 5.933 11 Si 0.969 3.031 12 H -0.266 1.266 13 H -0.284 1.284 14 H -0.265 1.265 15 C 0.068 3.932 16 C 0.051 3.949 17 N -0.456 5.456 18 C 0.046 3.954 19 C 0.048 3.952 20 N -0.453 5.453 21 H 0.046 0.954 22 H 0.081 0.919 23 H 0.061 0.939 24 H 0.337 0.663 25 H 0.065 0.935 26 H 0.021 0.979 27 H -0.014 1.014 28 H -0.008 1.008 29 H 0.264 0.736 30 H 0.191 0.809 31 H 0.205 0.795 32 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.674 1.694 18.480 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.022 3.978 3 H 0.092 0.908 4 N -0.314 5.314 5 C -0.045 4.045 6 C -0.005 4.005 7 C -0.583 4.583 8 H 0.082 0.918 9 C -0.198 4.198 10 N -0.573 5.573 11 Si 0.793 3.207 12 H -0.191 1.191 13 H -0.209 1.209 14 H -0.190 1.190 15 C -0.072 4.072 16 C -0.108 4.108 17 N -0.170 5.170 18 C -0.114 4.114 19 C -0.113 4.113 20 N -0.169 5.169 21 H 0.065 0.935 22 H 0.100 0.900 23 H 0.080 0.920 24 H 0.156 0.844 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.004 0.996 28 H 0.011 0.989 29 H 0.072 0.928 30 H 0.207 0.793 31 H 0.222 0.778 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -3.243 1.336 18.201 18.536 hybrid contribution 0.981 0.540 -0.808 1.381 sum -2.262 1.876 17.393 17.640 Atomic orbital electron populations 1.21730 0.92207 1.02004 1.02619 1.20517 0.97091 0.95058 0.85169 0.90841 1.60472 1.33862 1.33258 1.03842 1.21877 0.99503 0.93086 0.90054 1.18894 0.94093 0.95105 0.92377 1.21594 1.44062 0.97041 0.95605 0.91831 1.26011 0.94726 0.96847 1.02243 1.70123 1.45170 1.16567 1.25482 0.85448 0.79012 0.78560 0.77691 1.19075 1.20911 1.19001 1.22390 0.96595 0.91447 0.96759 1.23818 0.96257 1.02510 0.88221 1.68532 1.08209 1.10611 1.29684 1.24354 0.96057 0.90790 1.00209 1.24391 0.94992 1.03024 0.88846 1.68272 1.07678 1.09397 1.31537 0.93485 0.89985 0.91992 0.84445 0.91634 0.96130 0.99612 0.98925 0.92780 0.79262 0.77812 0.78696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.40 71.98 0.68 -2.59 16 2 C 0.13 3.78 2.88 44.17 0.13 3.90 16 3 H 0.07 1.89 7.78 -2.39 -0.02 1.87 16 4 N -0.68 -25.63 6.06 -495.44 -3.00 -28.64 16 5 C 0.08 3.57 5.42 86.30 0.47 4.03 16 6 C 0.03 1.80 5.23 29.84 0.16 1.96 16 7 C -0.54 -31.52 9.11 25.60 0.23 -31.28 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 10 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 11 Si 0.97 44.59 29.54 68.60 2.03 46.61 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 14 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 15 C 0.07 1.80 5.70 42.55 0.24 2.05 16 16 C 0.05 1.12 10.90 84.68 0.92 2.05 16 17 N -0.46 -9.92 10.50 -195.22 -2.05 -11.97 16 18 C 0.05 0.80 11.22 84.67 0.95 1.75 16 19 C 0.05 0.97 11.22 84.67 0.95 1.92 16 20 N -0.45 -12.84 9.46 -183.30 -1.73 -14.58 16 21 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 23 H 0.06 1.65 7.45 -2.39 -0.02 1.63 16 24 H 0.34 13.27 7.86 -89.69 -0.70 12.56 16 25 H 0.07 2.72 7.44 -2.39 -0.02 2.70 16 26 H 0.02 0.85 8.06 -2.38 -0.02 0.83 16 27 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 28 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 29 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 30 H 0.19 3.02 8.06 -2.91 -0.02 2.99 16 31 H 0.21 1.84 8.06 -2.91 -0.02 1.81 16 32 H 0.20 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -70.68 278.09 1.12 -69.57 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.40 Total: 12.61 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 5.19 Total: -15.77 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -6.50 Total: -113.02 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -70.68 1.12 -69.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379615131.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.099 kcal (2) G-P(sol) polarization free energy of solvation -70.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds