Wall clock time and date at job start Sun Mar 29 2020 22:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 120.00297 * 2 1 4 4 H 1.48499 * 109.47202 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46869 * 299.99818 * 3 2 1 6 6 H 1.48500 * 109.46927 * 59.99678 * 3 2 1 7 7 C 1.37880 * 119.99400 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99405 * 173.60219 * 7 2 1 9 9 C 1.50691 * 120.00268 * 353.59927 * 7 2 1 10 10 C 1.53000 * 115.54952 * 85.44820 * 9 7 2 11 11 N 1.46897 * 109.47224 * 65.04780 * 10 9 7 12 12 C 1.46906 * 110.99857 * 185.35034 * 11 10 9 13 13 C 1.50696 * 109.47071 * 179.97438 * 12 11 10 14 14 C 1.34674 * 126.59245 * 265.16832 * 13 12 11 15 15 N 1.34121 * 108.01973 * 180.28592 * 14 13 12 16 16 C 1.30497 * 109.26074 * 359.72709 * 15 14 13 17 17 N 1.35052 * 108.69665 * 0.02562 * 16 15 14 18 18 H 0.96998 * 126.39792 * 180.02562 * 17 16 15 19 19 C 1.53000 * 117.49848 * 231.11508 * 9 7 2 20 20 C 1.52998 * 117.49999 * 299.77340 * 9 7 2 21 21 H 0.97002 * 119.99401 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46765 * 305.04605 * 10 9 7 23 23 H 1.09001 * 109.46956 * 185.04994 * 10 9 7 24 24 H 1.00894 * 111.00052 * 61.39867 * 11 10 9 25 25 H 1.09007 * 109.46905 * 60.00038 * 12 11 10 26 26 H 1.08997 * 109.47421 * 300.00079 * 12 11 10 27 27 H 1.08004 * 125.98547 * 359.97438 * 14 13 12 28 28 H 1.07996 * 125.65548 * 179.97438 * 16 15 14 29 29 H 1.09002 * 117.49851 * 215.00588 * 19 9 7 30 30 H 1.08999 * 117.49982 * 0.02562 * 19 9 7 31 31 H 1.08997 * 117.50161 * 359.97438 * 20 9 7 32 32 H 1.09001 * 117.49775 * 144.97529 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1971 -0.1037 9 6 1.2580 -2.4950 0.1466 10 6 0.7037 -3.0870 -1.1508 11 7 1.8169 -3.4590 -2.0341 12 6 1.3227 -3.9137 -3.3407 13 6 2.4905 -4.2852 -4.2178 14 6 3.0998 -3.4937 -5.1211 15 7 4.0860 -4.2000 -5.6933 16 6 4.1148 -5.3972 -5.1749 17 7 3.1374 -5.4911 -4.2476 18 1 2.9305 -6.2688 -3.7061 19 6 1.7455 -3.4729 1.2176 20 6 0.4400 -2.7006 1.4231 21 1 -0.4849 0.8401 -0.0004 22 1 0.0763 -2.3476 -1.6485 23 1 0.1101 -3.9721 -0.9218 24 1 2.4007 -4.1606 -1.6042 25 1 0.7544 -3.1125 -3.8132 26 1 0.6798 -4.7832 -3.2036 27 1 2.8368 -2.4712 -5.3488 28 1 4.8052 -6.1831 -5.4434 29 1 1.6714 -4.5379 0.9979 30 1 2.6060 -3.1751 1.8168 31 1 0.4421 -1.8952 2.1575 32 1 -0.4933 -3.2573 1.3385 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389281425.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:29 Heat of formation + Delta-G solvation = 82.820130 kcal Electronic energy + Delta-G solvation = -14615.012567 eV Core-core repulsion = 12191.261897 eV Total energy + Delta-G solvation = -2423.750670 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.82272 -37.09723 -34.61411 -32.25393 -31.81924 -29.88118 -26.18904 -25.14692 -23.06965 -21.33618 -21.05255 -20.64321 -19.05413 -17.74756 -16.11883 -15.17552 -14.83170 -14.47478 -14.28366 -13.65819 -13.51043 -13.40850 -13.14344 -12.55533 -11.71465 -11.57149 -11.25244 -10.91848 -10.66217 -10.42982 -10.18806 -9.87389 -9.86182 -9.46866 -8.80225 -8.36854 -8.28678 -8.03177 -7.61491 -5.94508 -3.95697 2.19094 3.24340 3.35404 3.35872 3.44117 3.49562 4.50232 4.76564 4.89064 5.16098 5.26962 5.36009 5.44302 5.64498 5.85323 5.92572 6.12481 6.28177 6.42180 6.45379 6.59863 6.70878 6.83245 6.93606 7.10260 7.45292 7.48007 7.54163 7.85755 7.99436 8.04854 8.21503 8.55918 9.04032 9.67886 11.15508 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028235 B = 0.007495 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.443122 B = 3734.770121 C = 4328.716725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.287 1.287 7 C -0.469 4.469 8 H 0.060 0.940 9 C 0.052 3.948 10 C 0.107 3.893 11 N -0.662 5.662 12 C 0.133 3.867 13 C -0.008 4.008 14 C -0.011 4.011 15 N -0.497 5.497 16 C 0.173 3.827 17 N -0.570 5.570 18 H 0.415 0.585 19 C -0.217 4.217 20 C -0.157 4.157 21 H 0.257 0.743 22 H 0.080 0.920 23 H -0.005 1.005 24 H 0.328 0.672 25 H 0.095 0.905 26 H 0.024 0.976 27 H 0.170 0.830 28 H 0.203 0.797 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.253 -10.910 -5.687 12.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.213 1.213 7 C -0.507 4.507 8 H 0.078 0.922 9 C 0.051 3.949 10 C -0.021 4.021 11 N -0.292 5.292 12 C 0.003 3.997 13 C -0.123 4.123 14 C -0.159 4.159 15 N -0.217 5.217 16 C -0.111 4.111 17 N -0.174 5.174 18 H 0.252 0.748 19 C -0.254 4.254 20 C -0.196 4.196 21 H 0.066 0.934 22 H 0.098 0.902 23 H 0.013 0.987 24 H 0.144 0.856 25 H 0.113 0.887 26 H 0.042 0.958 27 H 0.187 0.813 28 H 0.220 0.780 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.730 -9.777 -6.545 12.078 hybrid contribution -0.566 -0.696 1.189 1.489 sum 2.164 -10.473 -5.357 11.961 Atomic orbital electron populations 1.70018 1.05811 1.26089 1.50552 1.24936 0.94768 0.98774 0.94978 0.86595 0.80381 0.84034 0.77347 1.19759 1.21132 1.21297 1.20345 0.92904 0.88330 1.49101 0.92195 1.18821 0.97148 0.93789 0.85104 1.21593 0.90402 0.95953 0.94195 1.60315 1.21995 1.44633 1.02249 1.20341 0.90520 0.98582 0.90288 1.21374 1.00976 0.86405 1.03559 1.22110 0.95479 1.00183 0.98098 1.70253 1.20940 1.03264 1.27225 1.24851 0.95317 0.97998 0.92914 1.43278 1.27549 1.13559 1.32987 0.74786 1.22994 0.98640 0.95288 1.08480 1.22522 0.91883 1.01152 1.04004 0.93363 0.90194 0.98732 0.85565 0.88696 0.95817 0.81282 0.78015 0.92364 0.90491 0.89989 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.04 12.92 55.43 0.72 -24.32 16 2 C 0.07 1.84 5.39 -17.82 -0.10 1.75 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.47 -12.76 8.74 -34.44 -0.30 -13.06 16 8 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 9 C 0.05 1.25 1.55 -155.67 -0.24 1.01 16 10 C 0.11 2.29 5.51 -3.83 -0.02 2.27 16 11 N -0.66 -12.45 6.37 -115.05 -0.73 -13.18 16 12 C 0.13 2.05 6.23 -4.97 -0.03 2.02 16 13 C -0.01 -0.11 6.75 -81.60 -0.55 -0.66 16 14 C -0.01 -0.17 11.79 -17.81 -0.21 -0.38 16 15 N -0.50 -7.90 11.25 -14.66 -0.16 -8.07 16 16 C 0.17 2.09 13.04 -90.37 -1.18 0.91 16 17 N -0.57 -6.59 6.15 -10.30 -0.06 -6.65 16 18 H 0.42 3.43 8.96 -40.82 -0.37 3.06 16 19 C -0.22 -4.63 9.96 -26.70 -0.27 -4.89 16 20 C -0.16 -3.65 9.41 -26.70 -0.25 -3.90 16 21 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 22 H 0.08 1.92 8.13 -51.93 -0.42 1.49 16 23 H -0.01 -0.11 8.09 -51.93 -0.42 -0.53 16 24 H 0.33 5.82 8.78 -39.30 -0.34 5.47 16 25 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 26 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.17 2.62 8.06 -52.48 -0.42 2.20 16 28 H 0.20 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 31 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 280.98 15.07 4.23 4.23 Total: -1.00 -30.87 280.98 -8.66 -39.53 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -4.48 Total: 6.85 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -3.15 Total: -14.94 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.24 Total: -52.22 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.87 -8.66 -39.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389281425.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.352 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds