Wall clock time and date at job start Sun Mar 29 2020 22:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 120.00297 * 2 1 4 4 H 1.48499 * 109.47202 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46869 * 299.99818 * 3 2 1 6 6 H 1.48500 * 109.46927 * 59.99678 * 3 2 1 7 7 C 1.37880 * 119.99400 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99405 * 173.60219 * 7 2 1 9 9 C 1.50691 * 120.00268 * 353.59927 * 7 2 1 10 10 C 1.53000 * 115.54952 * 85.44820 * 9 7 2 11 11 N 1.46897 * 109.47224 * 65.04780 * 10 9 7 12 12 C 1.46906 * 110.99857 * 185.35034 * 11 10 9 13 13 C 1.50696 * 109.47071 * 179.97438 * 12 11 10 14 14 C 1.34674 * 126.59245 * 265.16832 * 13 12 11 15 15 N 1.34121 * 108.01973 * 180.28592 * 14 13 12 16 16 C 1.30497 * 109.26074 * 359.72709 * 15 14 13 17 17 N 1.35052 * 108.69665 * 0.02562 * 16 15 14 18 18 H 0.96998 * 126.39792 * 180.02562 * 17 16 15 19 19 C 1.53000 * 117.49848 * 231.11508 * 9 7 2 20 20 C 1.52998 * 117.49999 * 299.77340 * 9 7 2 21 21 H 0.97002 * 119.99401 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46765 * 305.04605 * 10 9 7 23 23 H 1.09001 * 109.46956 * 185.04994 * 10 9 7 24 24 H 1.00894 * 111.00052 * 61.39867 * 11 10 9 25 25 H 1.09007 * 109.46905 * 60.00038 * 12 11 10 26 26 H 1.08997 * 109.47421 * 300.00079 * 12 11 10 27 27 H 1.08004 * 125.98547 * 359.97438 * 14 13 12 28 28 H 1.07996 * 125.65548 * 179.97438 * 16 15 14 29 29 H 1.09002 * 117.49851 * 215.00588 * 19 9 7 30 30 H 1.08999 * 117.49982 * 0.02562 * 19 9 7 31 31 H 1.08997 * 117.50161 * 359.97438 * 20 9 7 32 32 H 1.09001 * 117.49775 * 144.97529 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1971 -0.1037 9 6 1.2580 -2.4950 0.1466 10 6 0.7037 -3.0870 -1.1508 11 7 1.8169 -3.4590 -2.0341 12 6 1.3227 -3.9137 -3.3407 13 6 2.4905 -4.2852 -4.2178 14 6 3.0998 -3.4937 -5.1211 15 7 4.0860 -4.2000 -5.6933 16 6 4.1148 -5.3972 -5.1749 17 7 3.1374 -5.4911 -4.2476 18 1 2.9305 -6.2688 -3.7061 19 6 1.7455 -3.4729 1.2176 20 6 0.4400 -2.7006 1.4231 21 1 -0.4849 0.8401 -0.0004 22 1 0.0763 -2.3476 -1.6485 23 1 0.1101 -3.9721 -0.9218 24 1 2.4007 -4.1606 -1.6042 25 1 0.7544 -3.1125 -3.8132 26 1 0.6798 -4.7832 -3.2036 27 1 2.8368 -2.4712 -5.3488 28 1 4.8052 -6.1831 -5.4434 29 1 1.6714 -4.5379 0.9979 30 1 2.6060 -3.1751 1.8168 31 1 0.4421 -1.8952 2.1575 32 1 -0.4933 -3.2573 1.3385 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389281425.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:28 Heat of formation + Delta-G solvation = 62.474389 kcal Electronic energy + Delta-G solvation = -14615.894825 eV Core-core repulsion = 12191.261897 eV Total energy + Delta-G solvation = -2424.632927 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.87368 -38.82659 -36.10574 -33.89568 -33.31490 -31.12505 -27.86076 -26.91576 -24.53546 -22.84776 -22.34388 -21.76784 -20.90026 -18.88346 -17.93465 -16.77789 -16.33601 -16.10263 -15.54851 -15.15414 -14.93938 -14.88292 -14.33044 -14.09662 -13.33628 -13.16116 -12.96720 -12.87331 -12.58525 -12.33111 -12.01042 -11.37485 -10.96171 -10.90854 -10.72787 -10.37200 -9.93806 -9.37176 -9.03776 -8.03876 -6.09165 1.12850 1.40946 1.44664 1.54557 2.24105 2.32022 2.48369 3.26514 3.36866 3.71119 3.86226 4.07026 4.18124 4.40526 4.54055 4.62615 4.69980 4.71698 4.78860 4.82712 4.99327 5.07091 5.29614 5.33364 5.65129 5.75436 5.80162 5.89222 6.29776 6.49597 6.63436 6.69294 6.94155 7.17107 7.56230 9.05270 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028235 B = 0.007495 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.443122 B = 3734.770121 C = 4328.716725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.479 4.479 8 H 0.044 0.956 9 C 0.023 3.977 10 C 0.123 3.877 11 N -0.676 5.676 12 C 0.140 3.860 13 C -0.013 4.013 14 C -0.038 4.038 15 N -0.540 5.540 16 C 0.193 3.807 17 N -0.556 5.556 18 H 0.433 0.567 19 C -0.188 4.188 20 C -0.165 4.165 21 H 0.256 0.744 22 H 0.046 0.954 23 H 0.015 0.985 24 H 0.336 0.664 25 H 0.082 0.918 26 H 0.049 0.951 27 H 0.159 0.841 28 H 0.250 0.750 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.997 -12.936 -5.813 14.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.768 3.232 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.006 4.006 11 N -0.307 5.307 12 C 0.010 3.990 13 C -0.130 4.130 14 C -0.186 4.186 15 N -0.260 5.260 16 C -0.091 4.091 17 N -0.161 5.161 18 H 0.274 0.726 19 C -0.225 4.225 20 C -0.203 4.203 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.033 0.967 24 H 0.154 0.846 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.177 0.823 28 H 0.265 0.735 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.474 -11.828 -6.656 14.010 hybrid contribution -0.737 -0.133 1.204 1.418 sum 2.737 -11.961 -5.452 13.427 Atomic orbital electron populations 1.70100 1.06717 1.26535 1.51638 1.25528 0.95486 1.01382 0.95143 0.85779 0.79212 0.80972 0.77286 1.19773 1.21087 1.20834 1.20557 0.92388 0.90248 1.48573 0.93816 1.18942 0.98246 0.93893 0.86713 1.21208 0.90715 0.95655 0.92999 1.60157 1.21636 1.45878 1.03068 1.20223 0.91081 0.99094 0.88553 1.21104 1.01056 0.87502 1.03300 1.22180 0.96552 1.00495 0.99385 1.70227 1.21757 1.05091 1.28952 1.25744 0.94647 0.97638 0.91079 1.43197 1.26800 1.13190 1.32902 0.72600 1.22978 0.97129 0.96519 1.05906 1.22442 0.93523 1.01267 1.03086 0.93480 0.93543 0.96718 0.84642 0.89920 0.93321 0.82328 0.73463 0.88992 0.90898 0.92611 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.16 12.92 21.45 0.28 -51.88 16 2 C 0.02 1.31 5.39 84.65 0.46 1.77 16 3 Si 0.94 44.78 29.54 68.60 2.03 46.81 16 4 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 7 C -0.48 -26.27 8.74 25.60 0.22 -26.05 16 8 H 0.04 2.48 7.82 -2.91 -0.02 2.45 16 9 C 0.02 1.08 1.55 -52.93 -0.08 1.00 16 10 C 0.12 5.17 5.51 86.30 0.48 5.64 16 11 N -0.68 -24.58 6.37 -517.92 -3.30 -27.88 16 12 C 0.14 4.13 6.23 85.55 0.53 4.67 16 13 C -0.01 -0.37 6.75 40.95 0.28 -0.09 16 14 C -0.04 -1.24 11.79 83.53 0.98 -0.25 16 15 N -0.54 -16.48 11.25 -200.31 -2.25 -18.74 16 16 C 0.19 4.06 13.04 180.26 2.35 6.41 16 17 N -0.56 -11.15 6.15 -186.49 -1.15 -12.30 16 18 H 0.43 5.46 8.96 -92.71 -0.83 4.63 16 19 C -0.19 -7.63 9.96 30.62 0.30 -7.32 16 20 C -0.16 -7.53 9.41 30.62 0.29 -7.24 16 21 H 0.26 14.11 8.31 -92.71 -0.77 13.33 16 22 H 0.05 2.24 8.13 -2.39 -0.02 2.23 16 23 H 0.01 0.56 8.09 -2.39 -0.02 0.54 16 24 H 0.34 11.14 8.78 -89.70 -0.79 10.35 16 25 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.16 5.16 8.06 -2.91 -0.02 5.13 16 28 H 0.25 2.56 8.06 -2.91 -0.02 2.54 16 29 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -66.75 280.98 0.92 -65.83 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -0.49 Total: 19.62 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 5.81 Total: -21.47 kcal Atomic # 7 Polarization: -104.37 SS G_CDS: -6.42 Total: -110.79 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -66.75 0.92 -65.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389281425.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.304 kcal (2) G-P(sol) polarization free energy of solvation -66.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds