Wall clock time and date at job start Sun Mar 29 2020 22:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99925 * 2 1 4 4 H 1.48499 * 109.46446 * 267.14991 * 3 2 1 5 5 H 1.48491 * 109.47347 * 27.15038 * 3 2 1 6 6 H 1.48499 * 109.47109 * 147.15551 * 3 2 1 7 7 C 1.37876 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00206 * 353.93463 * 7 2 1 9 9 C 1.50708 * 120.00076 * 174.20885 * 7 2 1 10 10 C 1.53003 * 115.54525 * 294.59861 * 9 7 2 11 11 N 1.46900 * 109.46897 * 295.18286 * 10 9 7 12 12 C 1.46900 * 110.99560 * 174.75023 * 11 10 9 13 13 C 1.50697 * 109.47012 * 185.59119 * 12 11 10 14 14 N 1.30509 * 125.64736 * 274.68947 * 13 12 11 15 15 C 1.34132 * 109.25328 * 179.89500 * 14 13 12 16 16 C 1.34669 * 108.02036 * 0.36837 * 15 14 13 17 17 N 1.35045 * 125.65700 * 95.00046 * 13 12 11 18 18 H 0.97002 * 126.39171 * 359.97438 * 17 13 12 19 19 C 1.52995 * 117.49752 * 148.92731 * 9 7 2 20 20 C 1.52998 * 117.49726 * 80.26404 * 9 7 2 21 21 H 0.97000 * 119.99840 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47042 * 55.18499 * 10 9 7 23 23 H 1.09000 * 109.46922 * 175.18693 * 10 9 7 24 24 H 1.00902 * 111.00293 * 298.70181 * 11 10 9 25 25 H 1.08997 * 109.47220 * 305.58437 * 12 11 10 26 26 H 1.08995 * 109.47239 * 65.59022 * 12 11 10 27 27 H 1.08002 * 125.98649 * 180.19049 * 15 14 13 28 28 H 1.07999 * 126.58788 * 179.81833 * 16 15 14 29 29 H 1.08993 * 117.50291 * 359.97438 * 19 9 7 30 30 H 1.09009 * 117.49550 * 145.02284 * 19 9 7 31 31 H 1.09001 * 117.49923 * 214.97934 * 20 9 7 32 32 H 1.08998 * 117.50396 * 359.97438 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5569 2.0115 -1.3984 5 1 1.4179 2.6693 0.6388 6 1 3.5154 1.4584 0.7593 7 6 2.0046 -1.1940 0.0005 8 1 1.4691 -2.1267 0.0998 9 6 3.5059 -1.1975 -0.1312 10 6 4.0522 -0.6890 -1.4668 11 7 3.6338 -1.5958 -2.5441 12 6 4.0345 -1.0734 -3.8573 13 6 3.4716 -1.9553 -4.9418 14 7 4.0245 -3.0455 -5.3990 15 6 3.2439 -3.5696 -6.3557 16 6 2.1706 -2.7697 -6.5023 17 7 2.3145 -1.7455 -5.6057 18 1 1.7002 -1.0068 -5.4722 19 6 4.2733 -2.3243 0.5631 20 6 4.3260 -0.9018 1.1262 21 1 -0.4850 0.8401 -0.0004 22 1 3.6633 0.3104 -1.6616 23 1 5.1408 -0.6533 -1.4242 24 1 3.9998 -2.5246 -2.3975 25 1 3.6511 -0.0601 -3.9775 26 1 5.1221 -1.0610 -3.9269 27 1 3.4430 -4.4731 -6.9129 28 1 1.3530 -2.9097 -7.1940 29 1 3.6925 -3.0629 1.1155 30 1 5.1678 -2.7031 0.0685 31 1 5.2550 -0.3454 1.0018 32 1 3.7797 -0.7044 2.0485 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389281873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:55 Heat of formation + Delta-G solvation = 87.605190 kcal Electronic energy + Delta-G solvation = -14769.677593 eV Core-core repulsion = 12346.134419 eV Total energy + Delta-G solvation = -2423.543174 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.77644 -37.40728 -34.62704 -32.24058 -32.01963 -29.88892 -26.68691 -25.32067 -23.23096 -21.47448 -21.35287 -20.26953 -18.98482 -17.77834 -16.32831 -15.47154 -14.96693 -14.51884 -14.17168 -13.69980 -13.60057 -13.54494 -13.17654 -12.73614 -12.19607 -11.78591 -11.67450 -10.95901 -10.54659 -10.43256 -10.17111 -9.88114 -9.82208 -9.47456 -9.02218 -8.58330 -8.41807 -8.24492 -7.73842 -6.01792 -3.98654 2.23149 3.25804 3.27705 3.37331 3.38868 3.45044 4.46796 4.55292 4.82043 5.14749 5.16736 5.32239 5.39940 5.50819 5.74603 5.82530 5.92593 5.99175 6.15650 6.22881 6.31972 6.46577 6.54330 6.77563 6.90814 7.07578 7.16903 7.51639 7.66986 7.80400 7.98942 8.28501 8.61053 9.02335 9.62104 11.10994 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030045 B = 0.008276 C = 0.007404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.722576 B = 3382.390421 C = 3780.577734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.076 3.924 3 Si 0.870 3.130 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.253 1.253 7 C -0.457 4.457 8 H 0.074 0.926 9 C 0.004 3.996 10 C 0.095 3.905 11 N -0.659 5.659 12 C 0.139 3.861 13 C 0.229 3.771 14 N -0.494 5.494 15 C -0.033 4.033 16 C -0.061 4.061 17 N -0.555 5.555 18 H 0.421 0.579 19 C -0.185 4.185 20 C -0.195 4.195 21 H 0.261 0.739 22 H 0.065 0.935 23 H 0.010 0.990 24 H 0.345 0.655 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.166 0.834 28 H 0.173 0.827 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.448 -0.931 -9.887 11.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.125 4.125 3 Si 0.699 3.301 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.177 1.177 7 C -0.495 4.495 8 H 0.092 0.908 9 C 0.003 3.997 10 C -0.033 4.033 11 N -0.291 5.291 12 C 0.008 3.992 13 C -0.036 4.036 14 N -0.215 5.215 15 C -0.181 4.181 16 C -0.196 4.196 17 N -0.157 5.157 18 H 0.259 0.741 19 C -0.222 4.222 20 C -0.233 4.233 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.028 0.972 24 H 0.164 0.836 25 H 0.100 0.900 26 H 0.072 0.928 27 H 0.183 0.817 28 H 0.191 0.809 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.410 -0.911 -9.664 11.633 hybrid contribution 0.107 1.374 -0.319 1.415 sum 6.517 0.463 -9.983 11.931 Atomic orbital electron populations 1.69914 1.06284 1.26669 1.51211 1.24872 0.94435 0.98713 0.94439 0.87022 0.81142 0.83836 0.78105 1.20847 1.22259 1.17693 1.20156 0.86610 0.94318 1.48411 0.90776 1.19395 0.94758 0.97959 0.87611 1.21727 0.94200 0.96026 0.91366 1.60133 1.64288 1.05798 0.98903 1.20194 0.97387 0.95215 0.86429 1.23167 0.85927 0.96587 0.97902 1.70218 1.30902 1.07983 1.12394 1.22271 0.93538 1.01814 1.00484 1.22702 1.03696 0.92702 1.00494 1.43250 1.20093 1.22717 1.29640 0.74060 1.22770 1.01589 0.91881 1.05959 1.23069 1.01347 0.98290 1.00621 0.92894 0.91686 0.97221 0.83617 0.89969 0.92783 0.81656 0.80947 0.89757 0.91257 0.91512 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 3 Si 0.87 21.10 25.10 -169.99 -4.27 16.83 16 4 H -0.28 -6.60 6.75 56.52 0.38 -6.22 16 5 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.25 -5.80 5.86 56.52 0.33 -5.47 16 7 C -0.46 -12.66 9.29 -34.44 -0.32 -12.98 16 8 H 0.07 2.29 8.06 -52.49 -0.42 1.86 16 9 C 0.00 0.09 1.00 -155.66 -0.16 -0.06 16 10 C 0.10 1.95 5.14 -3.82 -0.02 1.93 16 11 N -0.66 -12.76 6.33 -115.06 -0.73 -13.49 16 12 C 0.14 2.25 6.31 -4.98 -0.03 2.22 16 13 C 0.23 3.74 7.71 -155.41 -1.20 2.54 16 14 N -0.49 -8.44 11.25 -10.81 -0.12 -8.56 16 15 C -0.03 -0.46 11.87 -17.81 -0.21 -0.67 16 16 C -0.06 -0.77 12.04 -16.57 -0.20 -0.97 16 17 N -0.55 -7.76 6.15 -10.23 -0.06 -7.82 16 18 H 0.42 5.04 8.96 -40.82 -0.37 4.67 16 19 C -0.18 -3.74 9.96 -26.69 -0.27 -4.01 16 20 C -0.19 -4.09 8.09 -26.69 -0.22 -4.31 16 21 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 22 H 0.06 1.41 4.84 -51.93 -0.25 1.16 16 23 H 0.01 0.18 8.09 -51.93 -0.42 -0.24 16 24 H 0.35 6.61 8.84 -39.29 -0.35 6.26 16 25 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 30 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 LS Contribution 271.38 15.07 4.09 4.09 Total: -1.00 -31.86 271.38 -7.44 -39.30 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -4.41 Total: 10.46 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -2.72 Total: -14.25 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.14 Total: -56.43 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.27 Total: 16.83 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.86 -7.44 -39.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389281873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.906 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds