Wall clock time and date at job start Sun Mar 29 2020 22:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99925 * 2 1 4 4 H 1.48499 * 109.46446 * 267.14991 * 3 2 1 5 5 H 1.48491 * 109.47347 * 27.15038 * 3 2 1 6 6 H 1.48499 * 109.47109 * 147.15551 * 3 2 1 7 7 C 1.37876 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00206 * 353.93463 * 7 2 1 9 9 C 1.50708 * 120.00076 * 174.20885 * 7 2 1 10 10 C 1.53003 * 115.54525 * 294.59861 * 9 7 2 11 11 N 1.46900 * 109.46897 * 295.18286 * 10 9 7 12 12 C 1.46900 * 110.99560 * 174.75023 * 11 10 9 13 13 C 1.50697 * 109.47012 * 185.59119 * 12 11 10 14 14 N 1.30509 * 125.64736 * 274.68947 * 13 12 11 15 15 C 1.34132 * 109.25328 * 179.89500 * 14 13 12 16 16 C 1.34669 * 108.02036 * 0.36837 * 15 14 13 17 17 N 1.35045 * 125.65700 * 95.00046 * 13 12 11 18 18 H 0.97002 * 126.39171 * 359.97438 * 17 13 12 19 19 C 1.52995 * 117.49752 * 148.92731 * 9 7 2 20 20 C 1.52998 * 117.49726 * 80.26404 * 9 7 2 21 21 H 0.97000 * 119.99840 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47042 * 55.18499 * 10 9 7 23 23 H 1.09000 * 109.46922 * 175.18693 * 10 9 7 24 24 H 1.00902 * 111.00293 * 298.70181 * 11 10 9 25 25 H 1.08997 * 109.47220 * 305.58437 * 12 11 10 26 26 H 1.08995 * 109.47239 * 65.59022 * 12 11 10 27 27 H 1.08002 * 125.98649 * 180.19049 * 15 14 13 28 28 H 1.07999 * 126.58788 * 179.81833 * 16 15 14 29 29 H 1.08993 * 117.50291 * 359.97438 * 19 9 7 30 30 H 1.09009 * 117.49550 * 145.02284 * 19 9 7 31 31 H 1.09001 * 117.49923 * 214.97934 * 20 9 7 32 32 H 1.08998 * 117.50396 * 359.97438 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5569 2.0115 -1.3984 5 1 1.4179 2.6693 0.6388 6 1 3.5154 1.4584 0.7593 7 6 2.0046 -1.1940 0.0005 8 1 1.4691 -2.1267 0.0998 9 6 3.5059 -1.1975 -0.1312 10 6 4.0522 -0.6890 -1.4668 11 7 3.6338 -1.5958 -2.5441 12 6 4.0345 -1.0734 -3.8573 13 6 3.4716 -1.9553 -4.9418 14 7 4.0245 -3.0455 -5.3990 15 6 3.2439 -3.5696 -6.3557 16 6 2.1706 -2.7697 -6.5023 17 7 2.3145 -1.7455 -5.6057 18 1 1.7002 -1.0068 -5.4722 19 6 4.2733 -2.3243 0.5631 20 6 4.3260 -0.9018 1.1262 21 1 -0.4850 0.8401 -0.0004 22 1 3.6633 0.3104 -1.6616 23 1 5.1408 -0.6533 -1.4242 24 1 3.9998 -2.5246 -2.3975 25 1 3.6511 -0.0601 -3.9775 26 1 5.1221 -1.0610 -3.9269 27 1 3.4430 -4.4731 -6.9129 28 1 1.3530 -2.9097 -7.1940 29 1 3.6925 -3.0629 1.1155 30 1 5.1678 -2.7031 0.0685 31 1 5.2550 -0.3454 1.0018 32 1 3.7797 -0.7044 2.0485 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389281873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:55 Heat of formation + Delta-G solvation = 63.902773 kcal Electronic energy + Delta-G solvation = -14770.705406 eV Core-core repulsion = 12346.134419 eV Total energy + Delta-G solvation = -2424.570988 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.87267 -39.06881 -36.08351 -34.15526 -33.36347 -31.11248 -28.29792 -27.07871 -24.72000 -23.09183 -22.44751 -21.42808 -20.80376 -19.02460 -18.15291 -17.08983 -16.33683 -16.13247 -15.55347 -15.01646 -14.96202 -14.87956 -14.68083 -14.41987 -13.73909 -13.44079 -13.02079 -12.81470 -12.29869 -12.12730 -12.00877 -11.39861 -11.02937 -10.96835 -10.88070 -10.52132 -10.25761 -9.39885 -9.12406 -8.18717 -6.20192 1.14262 1.35400 1.43963 1.55754 2.15012 2.33377 2.44333 3.03969 3.27996 3.52429 3.70592 4.05120 4.21409 4.34958 4.43089 4.46547 4.53379 4.61036 4.61792 4.82425 4.83816 4.93234 5.13743 5.24460 5.40018 5.54078 5.79171 5.86584 6.19445 6.38559 6.50239 6.55575 6.82853 7.17150 7.44433 8.98051 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030045 B = 0.008276 C = 0.007404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.722576 B = 3382.390421 C = 3780.577734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.018 3.982 3 Si 0.935 3.065 4 H -0.266 1.266 5 H -0.304 1.304 6 H -0.227 1.227 7 C -0.457 4.457 8 H 0.019 0.981 9 C -0.024 4.024 10 C 0.103 3.897 11 N -0.680 5.680 12 C 0.144 3.856 13 C 0.203 3.797 14 N -0.522 5.522 15 C -0.059 4.059 16 C -0.045 4.045 17 N -0.555 5.555 18 H 0.429 0.571 19 C -0.171 4.171 20 C -0.185 4.185 21 H 0.261 0.739 22 H 0.054 0.946 23 H 0.041 0.959 24 H 0.343 0.657 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.189 0.811 28 H 0.213 0.787 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.471 -0.134 -10.926 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.232 1.232 6 H -0.150 1.150 7 C -0.495 4.495 8 H 0.038 0.962 9 C -0.025 4.025 10 C -0.025 4.025 11 N -0.312 5.312 12 C 0.013 3.987 13 C -0.062 4.062 14 N -0.243 5.243 15 C -0.207 4.207 16 C -0.180 4.180 17 N -0.158 5.158 18 H 0.268 0.732 19 C -0.208 4.208 20 C -0.223 4.223 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.059 0.941 24 H 0.162 0.838 25 H 0.107 0.893 26 H 0.086 0.914 27 H 0.206 0.794 28 H 0.229 0.771 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.461 -0.125 -10.706 13.647 hybrid contribution -0.600 0.962 -0.028 1.134 sum 7.861 0.837 -10.734 13.331 Atomic orbital electron populations 1.70087 1.08439 1.27585 1.53655 1.25725 0.95083 1.02755 0.94207 0.85986 0.80419 0.78422 0.79174 1.19124 1.23181 1.14955 1.20282 0.89561 0.92153 1.47469 0.96247 1.19341 0.92065 1.01118 0.89957 1.21544 0.95716 0.95285 0.89999 1.60063 1.65252 1.05758 1.00134 1.20184 0.98255 0.95365 0.84857 1.23163 0.87062 0.97121 0.98854 1.70154 1.32184 1.08558 1.13443 1.22806 0.94029 1.03152 1.00683 1.23368 1.03881 0.91137 0.99646 1.43346 1.19663 1.23241 1.29517 0.73160 1.22806 1.01841 0.91347 1.04825 1.23089 1.01687 0.98904 0.98639 0.93036 0.92777 0.94114 0.83829 0.89265 0.91411 0.79444 0.77055 0.91099 0.88097 0.88323 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.98 13.96 21.45 0.30 -59.69 16 2 C 0.02 1.04 5.47 84.65 0.46 1.51 16 3 Si 0.93 43.07 25.10 68.60 1.72 44.80 16 4 H -0.27 -11.47 6.75 99.48 0.67 -10.80 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.23 -9.39 5.86 99.48 0.58 -8.81 16 7 C -0.46 -25.87 9.29 25.60 0.24 -25.63 16 8 H 0.02 1.26 8.06 -2.91 -0.02 1.24 16 9 C -0.02 -1.04 1.00 -52.93 -0.05 -1.10 16 10 C 0.10 3.96 5.14 86.30 0.44 4.40 16 11 N -0.68 -25.43 6.33 -517.95 -3.28 -28.70 16 12 C 0.14 4.41 6.31 85.56 0.54 4.95 16 13 C 0.20 6.36 7.71 138.12 1.07 7.43 16 14 N -0.52 -17.23 11.25 -188.12 -2.12 -19.35 16 15 C -0.06 -1.58 11.87 83.52 0.99 -0.59 16 16 C -0.05 -1.03 12.04 83.09 1.00 -0.03 16 17 N -0.55 -14.65 6.15 -186.27 -1.15 -15.79 16 18 H 0.43 9.67 8.96 -92.71 -0.83 8.84 16 19 C -0.17 -6.57 9.96 30.62 0.30 -6.27 16 20 C -0.19 -7.21 8.09 30.62 0.25 -6.96 16 21 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 22 H 0.05 2.18 4.84 -2.39 -0.01 2.17 16 23 H 0.04 1.32 8.09 -2.39 -0.02 1.30 16 24 H 0.34 12.79 8.84 -89.69 -0.79 12.00 16 25 H 0.09 2.55 8.08 -2.39 -0.02 2.53 16 26 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.19 3.87 8.06 -2.91 -0.02 3.84 16 28 H 0.21 2.94 8.06 -2.91 -0.02 2.91 16 29 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 31 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -70.68 271.38 0.07 -70.61 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.65 Total: 30.43 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 5.24 Total: -22.30 kcal Atomic # 7 Polarization: -117.29 SS G_CDS: -6.24 Total: -123.53 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.72 Total: 44.80 kcal Total: -70.68 0.07 -70.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389281873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.511 kcal (2) G-P(sol) polarization free energy of solvation -70.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds