Wall clock time and date at job start Sun Mar 29 2020 22:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 C 1.50699 * 109.47386 * 179.97438 * 13 12 2 15 15 C 1.40552 * 119.80123 * 89.99526 * 14 13 12 16 16 C 1.35864 * 119.66832 * 179.97438 * 15 14 13 17 17 C 1.41493 * 119.27630 * 0.02562 * 16 15 14 18 18 N 1.31702 * 120.19983 * 180.02562 * 17 16 15 19 19 N 1.37405 * 119.59944 * 0.02562 * 17 16 15 20 20 H 0.97004 * 119.84868 * 179.97438 * 19 17 16 21 21 C 1.34954 * 119.79350 * 269.72501 * 14 13 12 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 26 26 H 1.00906 * 111.00118 * 38.95572 * 12 2 1 27 27 H 1.09003 * 109.46741 * 300.00007 * 13 12 2 28 28 H 1.09003 * 109.47153 * 59.99606 * 13 12 2 29 29 H 1.08002 * 120.16633 * 0.02562 * 15 14 13 30 30 H 1.07997 * 120.36436 * 180.02562 * 16 15 14 31 31 H 0.97008 * 119.99850 * 180.02562 * 18 17 16 32 32 H 1.08003 * 119.62706 * 359.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5875 -0.5219 3.5559 15 6 3.9672 -0.5728 3.8190 16 6 4.4195 -1.2443 4.9101 17 6 3.4895 -1.8827 5.7643 18 7 3.9078 -2.5382 6.8272 19 7 2.1473 -1.8147 5.4780 20 1 1.5066 -2.2514 6.0610 21 6 1.7116 -1.1310 4.3825 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7093 1.1619 -3.4844 26 1 1.4496 -1.4980 1.4100 27 1 2.7589 1.0462 2.1181 28 1 1.0871 0.6162 2.5525 29 1 4.6644 -0.0800 3.1576 30 1 5.4772 -1.2902 5.1232 31 1 3.2677 -2.9752 7.4106 32 1 0.6538 -1.0798 4.1710 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389297280.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:34 Heat of formation + Delta-G solvation = 28.649782 kcal Electronic energy + Delta-G solvation = -14389.297851 eV Core-core repulsion = 11963.198179 eV Total energy + Delta-G solvation = -2426.099672 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.26646 -37.94472 -35.66650 -34.13169 -33.96189 -31.28892 -28.86132 -27.17156 -25.48636 -24.62823 -22.73978 -22.02742 -19.14252 -18.23599 -18.06336 -17.04215 -16.70776 -15.92278 -15.53485 -15.15218 -15.02582 -14.84864 -14.40740 -13.51724 -13.23222 -13.00896 -12.78149 -12.64252 -12.40113 -12.19932 -12.07705 -11.81831 -11.47243 -11.09331 -10.94639 -10.63838 -10.42961 -8.86343 -8.23111 -8.03077 -6.15104 0.12299 0.98060 1.46752 1.47735 1.55355 2.14564 2.47904 2.73332 3.23826 3.78491 3.83502 4.04881 4.13858 4.27863 4.45260 4.76617 4.78808 4.90527 4.98076 5.14507 5.18158 5.25453 5.47565 5.50034 5.64073 5.75971 5.90060 5.93655 6.34448 6.37518 6.73339 6.92399 7.02567 7.44966 7.55120 8.99938 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051074 B = 0.005473 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.089210 B = 5114.655907 C = 5371.779685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.214 3.786 3 H 0.005 0.995 4 C -0.514 4.514 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.955 3.045 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.685 5.685 13 C 0.120 3.880 14 C -0.199 4.199 15 C -0.005 4.005 16 C -0.195 4.195 17 C 0.420 3.580 18 N -0.818 5.818 19 N -0.627 5.627 20 H 0.423 0.577 21 C 0.146 3.854 22 H 0.031 0.969 23 H 0.031 0.969 24 H 0.058 0.942 25 H 0.260 0.740 26 H 0.331 0.669 27 H 0.063 0.937 28 H 0.037 0.963 29 H 0.137 0.863 30 H 0.145 0.855 31 H 0.330 0.670 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.151 -2.582 13.163 13.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.106 3.894 3 H 0.023 0.977 4 C -0.552 4.552 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.315 5.315 13 C -0.009 4.009 14 C -0.207 4.207 15 C -0.029 4.029 16 C -0.218 4.218 17 C 0.153 3.847 18 N -0.454 5.454 19 N -0.247 5.247 20 H 0.262 0.738 21 C 0.017 3.983 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.148 0.852 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.154 0.846 30 H 0.162 0.838 31 H 0.145 0.855 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.444 -2.561 13.274 13.526 hybrid contribution -1.938 -0.406 -0.614 2.073 sum -1.494 -2.966 12.660 13.088 Atomic orbital electron populations 1.22236 0.99841 0.99254 1.00263 1.18939 0.90129 0.92827 0.87518 0.97718 1.21458 1.30194 1.12369 0.91221 0.92953 1.25647 0.95563 0.95874 1.01688 1.69988 1.38130 1.24213 1.23903 0.85658 0.78619 0.78702 0.78871 1.19820 1.21152 1.20099 1.60695 1.58044 1.09498 1.03265 1.20532 0.98834 0.94130 0.87433 1.19093 0.93589 1.08489 0.99547 1.21240 0.95371 0.92450 0.93838 1.20749 0.99574 1.04651 0.96786 1.20234 0.81560 0.91028 0.91907 1.70857 1.38841 1.25750 1.10001 1.43353 1.07995 1.48071 1.25232 0.73789 1.22000 1.00699 0.89906 0.85696 0.94959 0.94952 0.92325 0.93115 0.85168 0.91834 0.94489 0.84552 0.83761 0.85542 0.79728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.99 8.94 71.98 0.64 -6.34 16 2 C 0.21 10.24 2.57 44.17 0.11 10.35 16 3 H 0.00 0.26 7.80 -2.39 -0.02 0.24 16 4 C -0.51 -27.76 8.84 25.60 0.23 -27.53 16 5 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 6 C 0.01 0.56 5.30 84.65 0.45 1.01 16 7 N -0.92 -52.01 11.32 21.45 0.24 -51.77 16 8 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 10 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 N -0.68 -26.27 6.22 -499.47 -3.11 -29.38 16 13 C 0.12 3.65 5.60 85.56 0.48 4.13 16 14 C -0.20 -4.96 5.36 -20.06 -0.11 -5.07 16 15 C 0.00 -0.12 9.73 22.28 0.22 0.09 16 16 C -0.20 -5.01 10.01 22.52 0.23 -4.78 16 17 C 0.42 10.49 7.78 134.39 1.05 11.53 16 18 N -0.82 -22.16 14.10 -55.23 -0.78 -22.94 16 19 N -0.63 -11.45 5.39 -192.37 -1.04 -12.48 16 20 H 0.42 5.06 8.83 -92.71 -0.82 4.24 16 21 C 0.15 2.77 10.79 83.24 0.90 3.67 16 22 H 0.03 1.22 7.45 -2.39 -0.02 1.20 16 23 H 0.03 1.37 8.13 -2.39 -0.02 1.35 16 24 H 0.06 3.00 6.07 -2.38 -0.01 2.99 16 25 H 0.26 14.06 8.31 -92.71 -0.77 13.28 16 26 H 0.33 11.81 8.46 -89.69 -0.76 11.05 16 27 H 0.06 2.07 8.00 -2.39 -0.02 2.05 16 28 H 0.04 1.04 7.36 -2.39 -0.02 1.02 16 29 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 30 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 31 H 0.33 7.49 8.83 -92.70 -0.82 6.67 16 32 H 0.19 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -63.31 274.05 0.29 -63.02 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -1.25 Total: 21.10 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 4.19 Total: -12.94 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -4.68 Total: -116.57 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -63.31 0.29 -63.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389297280.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.674 kcal (2) G-P(sol) polarization free energy of solvation -63.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds