Wall clock time and date at job start Sun Mar 29 2020 22:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46892 * 2 1 4 4 C 1.50691 * 109.46848 * 119.99736 * 2 1 3 5 5 H 1.07999 * 119.99857 * 120.00153 * 4 2 1 6 6 C 1.37877 * 120.00660 * 300.00111 * 4 2 1 7 7 N 1.31523 * 119.99360 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00407 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47221 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47338 * 120.00119 * 8 6 4 11 11 H 1.48502 * 109.46886 * 239.99992 * 8 6 4 12 12 N 1.46903 * 109.46857 * 240.00188 * 2 1 3 13 13 C 1.46898 * 111.00215 * 85.00301 * 12 2 1 14 14 C 1.50698 * 109.46958 * 179.97438 * 13 12 2 15 15 C 1.40565 * 119.79619 * 89.99702 * 14 13 12 16 16 C 1.35869 * 119.66586 * 179.97438 * 15 14 13 17 17 C 1.41500 * 119.27585 * 0.02562 * 16 15 14 18 18 N 1.31689 * 120.20113 * 180.02562 * 17 16 15 19 19 N 1.37412 * 119.59623 * 0.04262 * 17 16 15 20 20 H 0.97002 * 119.84607 * 179.97438 * 19 17 16 21 21 C 1.34946 * 119.80003 * 270.01763 * 14 13 12 22 22 H 1.09006 * 109.46923 * 60.00115 * 1 2 3 23 23 H 1.09005 * 109.47127 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47510 * 300.00028 * 1 2 3 25 25 H 0.97001 * 119.99231 * 180.02562 * 7 6 4 26 26 H 1.00905 * 110.99538 * 208.95696 * 12 2 1 27 27 H 1.08998 * 109.47093 * 59.99686 * 13 12 2 28 28 H 1.08999 * 109.46767 * 299.99575 * 13 12 2 29 29 H 1.08002 * 120.16932 * 359.72826 * 15 14 13 30 30 H 1.08001 * 120.36507 * 179.97438 * 16 15 14 31 31 H 0.97005 * 120.00314 * 0.02756 * 18 17 16 32 32 H 1.08002 * 119.62541 * 0.02562 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9426 0.8297 2.6033 8 14 2.3224 -1.1195 4.0079 9 1 3.1473 -2.2863 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5865 4.8164 12 7 2.0196 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 2.5885 -0.5215 -3.5557 15 6 1.6775 -1.1614 -4.4139 16 6 2.1366 -1.8312 -5.5033 17 6 3.5285 -1.8726 -5.7543 18 7 3.9933 -2.5161 -6.8050 19 7 4.3923 -1.2377 -4.8947 20 1 5.3472 -1.2641 -5.0630 21 6 3.9134 -0.5699 -3.8075 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.7086 1.1613 3.4844 26 1 2.9173 -1.1205 -1.0287 27 1 2.7589 1.0462 -2.1182 28 1 1.0871 0.6163 -2.5525 29 1 0.6183 -1.1243 -4.2063 30 1 1.4467 -2.3272 -6.1700 31 1 3.3809 -2.9632 -7.4101 32 1 4.6022 -0.0744 -3.1393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389297281.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:38 Heat of formation + Delta-G solvation = 49.049505 kcal Electronic energy + Delta-G solvation = -14386.256093 eV Core-core repulsion = 11961.041019 eV Total energy + Delta-G solvation = -2425.215074 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.22348 -36.29319 -34.18640 -33.38037 -32.21622 -29.73775 -27.51020 -25.37902 -24.35548 -23.11716 -21.86801 -19.80404 -18.07992 -16.81738 -16.26568 -16.15383 -14.93436 -14.42600 -14.38167 -14.18053 -13.92380 -13.45901 -12.84195 -12.11319 -11.88314 -11.41371 -11.18968 -10.88168 -10.81709 -10.47904 -10.29821 -10.19826 -10.15536 -9.85642 -9.25205 -8.85657 -8.51479 -7.36882 -7.14230 -6.06362 -4.12909 1.06549 2.04184 2.97487 3.26115 3.34503 3.38395 3.73358 4.37693 4.74061 4.92463 5.14991 5.22056 5.25230 5.47140 5.56950 5.82420 5.95565 6.21034 6.40918 6.42704 6.62448 6.85210 6.96759 7.10158 7.19412 7.35649 7.46302 7.74826 7.85701 8.24029 8.34433 8.45672 8.62520 8.97863 9.53484 10.99814 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050867 B = 0.005484 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.321404 B = 5104.154220 C = 5371.476468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.210 3.790 3 H 0.002 0.998 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.685 5.685 13 C 0.114 3.886 14 C -0.185 4.185 15 C 0.008 3.992 16 C -0.249 4.249 17 C 0.426 3.574 18 N -0.819 5.819 19 N -0.593 5.593 20 H 0.416 0.584 21 C 0.137 3.863 22 H 0.004 0.996 23 H 0.031 0.969 24 H 0.080 0.920 25 H 0.260 0.740 26 H 0.330 0.670 27 H 0.027 0.973 28 H 0.074 0.926 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.343 0.657 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.319 -0.810 -11.201 11.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.103 3.897 3 H 0.019 0.981 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.316 5.316 13 C -0.016 4.016 14 C -0.193 4.193 15 C -0.017 4.017 16 C -0.273 4.273 17 C 0.155 3.845 18 N -0.454 5.454 19 N -0.209 5.209 20 H 0.253 0.747 21 C 0.009 3.991 22 H 0.023 0.977 23 H 0.050 0.950 24 H 0.099 0.901 25 H 0.070 0.930 26 H 0.147 0.853 27 H 0.045 0.955 28 H 0.092 0.908 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.159 0.841 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.527 -1.115 -11.618 12.193 hybrid contribution 0.283 -0.062 1.059 1.098 sum 3.810 -1.178 -10.559 11.287 Atomic orbital electron populations 1.21721 0.97869 0.99360 0.99359 1.19133 0.92678 0.92349 0.85564 0.98066 1.21292 1.31441 1.12497 0.90432 0.92192 1.24918 0.95030 0.94987 0.99059 1.69910 1.36625 1.22917 1.23386 0.86476 0.78637 0.79608 0.82881 1.19770 1.21103 1.20968 1.60788 1.32182 1.32977 1.05681 1.20634 0.99928 0.92716 0.88370 1.19325 0.91730 1.07407 1.00852 1.21189 1.00297 0.89595 0.90572 1.21874 0.93920 1.08873 1.02664 1.18646 0.87034 0.89606 0.89246 1.69654 1.42443 1.24063 1.09205 1.41433 1.10376 1.46901 1.22144 0.74696 1.21681 0.96284 0.93188 0.87967 0.97683 0.94965 0.90130 0.92967 0.85293 0.95510 0.90806 0.85229 0.84875 0.84117 0.82060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.00 9.19 37.16 0.34 -2.65 16 2 C 0.21 5.08 2.60 -68.87 -0.18 4.90 16 3 H 0.00 0.04 7.80 -51.93 -0.40 -0.36 16 4 C -0.52 -13.75 8.59 -34.44 -0.30 -14.05 16 5 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 8 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.68 -13.59 6.29 -109.23 -0.69 -14.28 16 13 C 0.11 1.82 5.59 -4.98 -0.03 1.79 16 14 C -0.18 -2.50 5.36 -104.91 -0.56 -3.06 16 15 C 0.01 0.10 9.73 -39.55 -0.38 -0.28 16 16 C -0.25 -3.18 9.88 -39.19 -0.39 -3.57 16 17 C 0.43 5.78 7.79 -156.25 -1.22 4.57 16 18 N -0.82 -11.80 14.20 31.19 0.44 -11.36 16 19 N -0.59 -6.83 5.39 -12.16 -0.07 -6.90 16 20 H 0.42 3.95 8.92 -40.82 -0.36 3.58 16 21 C 0.14 1.56 10.79 -16.74 -0.18 1.38 16 22 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 25 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.33 6.40 8.22 -39.29 -0.32 6.08 16 27 H 0.03 0.42 7.98 -51.93 -0.41 0.01 16 28 H 0.07 1.21 7.38 -51.93 -0.38 0.83 16 29 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.34 4.48 8.75 -40.82 -0.36 4.12 16 32 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 273.71 15.07 4.12 4.12 Total: -1.00 -29.62 273.71 -7.74 -37.37 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.18 Total: 8.86 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -2.99 Total: -9.40 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.32 Total: -56.72 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.62 -7.74 -37.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389297281.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.416 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds