Wall clock time and date at job start Sun Mar 29 2020 22:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46892 * 2 1 4 4 C 1.50691 * 109.46848 * 119.99736 * 2 1 3 5 5 H 1.07999 * 119.99857 * 120.00153 * 4 2 1 6 6 C 1.37877 * 120.00660 * 300.00111 * 4 2 1 7 7 N 1.31523 * 119.99360 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00407 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47221 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47338 * 120.00119 * 8 6 4 11 11 H 1.48502 * 109.46886 * 239.99992 * 8 6 4 12 12 N 1.46903 * 109.46857 * 240.00188 * 2 1 3 13 13 C 1.46898 * 111.00215 * 85.00301 * 12 2 1 14 14 C 1.50698 * 109.46958 * 179.97438 * 13 12 2 15 15 C 1.40565 * 119.79619 * 89.99702 * 14 13 12 16 16 C 1.35869 * 119.66586 * 179.97438 * 15 14 13 17 17 C 1.41500 * 119.27585 * 0.02562 * 16 15 14 18 18 N 1.31689 * 120.20113 * 180.02562 * 17 16 15 19 19 N 1.37412 * 119.59623 * 0.04262 * 17 16 15 20 20 H 0.97002 * 119.84607 * 179.97438 * 19 17 16 21 21 C 1.34946 * 119.80003 * 270.01763 * 14 13 12 22 22 H 1.09006 * 109.46923 * 60.00115 * 1 2 3 23 23 H 1.09005 * 109.47127 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47510 * 300.00028 * 1 2 3 25 25 H 0.97001 * 119.99231 * 180.02562 * 7 6 4 26 26 H 1.00905 * 110.99538 * 208.95696 * 12 2 1 27 27 H 1.08998 * 109.47093 * 59.99686 * 13 12 2 28 28 H 1.08999 * 109.46767 * 299.99575 * 13 12 2 29 29 H 1.08002 * 120.16932 * 359.72826 * 15 14 13 30 30 H 1.08001 * 120.36507 * 179.97438 * 16 15 14 31 31 H 0.97005 * 120.00314 * 0.02756 * 18 17 16 32 32 H 1.08002 * 119.62541 * 0.02562 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9426 0.8297 2.6033 8 14 2.3224 -1.1195 4.0079 9 1 3.1473 -2.2863 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5865 4.8164 12 7 2.0196 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 2.5885 -0.5215 -3.5557 15 6 1.6775 -1.1614 -4.4139 16 6 2.1366 -1.8312 -5.5033 17 6 3.5285 -1.8726 -5.7543 18 7 3.9933 -2.5161 -6.8050 19 7 4.3923 -1.2377 -4.8947 20 1 5.3472 -1.2641 -5.0630 21 6 3.9134 -0.5699 -3.8075 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.7086 1.1613 3.4844 26 1 2.9173 -1.1205 -1.0287 27 1 2.7589 1.0462 -2.1182 28 1 1.0871 0.6163 -2.5525 29 1 0.6183 -1.1243 -4.2063 30 1 1.4467 -2.3272 -6.1700 31 1 3.3809 -2.9632 -7.4101 32 1 4.6022 -0.0744 -3.1393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389297281.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:38 Heat of formation + Delta-G solvation = 28.725669 kcal Electronic energy + Delta-G solvation = -14387.137401 eV Core-core repulsion = 11961.041019 eV Total energy + Delta-G solvation = -2426.096382 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.22949 -37.85096 -35.58079 -34.44803 -33.86092 -31.21192 -28.96003 -27.31035 -25.64778 -24.20415 -22.98542 -21.64604 -19.20180 -18.39489 -17.55527 -17.21025 -16.77863 -15.72857 -15.60168 -15.42105 -15.13148 -14.90433 -14.50713 -13.57484 -13.46582 -12.97573 -12.69880 -12.62769 -12.48577 -12.16426 -12.04208 -11.83803 -11.45764 -11.10141 -10.80393 -10.53695 -10.30108 -8.95861 -8.21934 -8.08340 -6.22970 0.10509 0.98918 1.43320 1.46392 1.56937 2.02772 2.44458 2.71666 3.19545 3.81139 3.83818 4.06562 4.15473 4.26657 4.46540 4.73892 4.82037 4.90893 4.98595 5.14906 5.28692 5.40903 5.43072 5.53355 5.59872 5.72651 5.92687 5.99114 6.28769 6.41870 6.54936 6.85468 7.08157 7.44918 7.47760 8.95748 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050867 B = 0.005484 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.321404 B = 5104.154220 C = 5371.476468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.214 3.786 3 H -0.024 1.024 4 C -0.534 4.534 5 H 0.059 0.941 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.959 3.041 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.284 1.284 12 N -0.685 5.685 13 C 0.120 3.880 14 C -0.206 4.206 15 C 0.004 3.996 16 C -0.256 4.256 17 C 0.416 3.584 18 N -0.838 5.838 19 N -0.584 5.584 20 H 0.428 0.572 21 C 0.160 3.840 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.054 0.946 25 H 0.261 0.739 26 H 0.333 0.667 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.134 0.866 30 H 0.147 0.853 31 H 0.347 0.653 32 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.301 -1.274 -11.513 12.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 H -0.007 1.007 4 C -0.572 4.572 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.785 3.215 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.210 1.210 12 N -0.316 5.316 13 C -0.009 4.009 14 C -0.215 4.215 15 C -0.021 4.021 16 C -0.280 4.280 17 C 0.146 3.854 18 N -0.474 5.474 19 N -0.200 5.200 20 H 0.266 0.734 21 C 0.031 3.969 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.150 0.850 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.152 0.848 30 H 0.165 0.835 31 H 0.163 0.837 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 4.532 -1.587 -11.958 12.886 hybrid contribution 0.007 0.106 1.099 1.104 sum 4.538 -1.482 -10.859 11.862 Atomic orbital electron populations 1.21556 0.97987 0.98708 0.99068 1.18921 0.92596 0.91049 0.86850 1.00661 1.21631 1.31396 1.12532 0.91646 0.92324 1.25682 0.95256 0.95664 1.01908 1.70031 1.37572 1.24116 1.23986 0.85499 0.78036 0.78639 0.79364 1.19141 1.20668 1.20956 1.60682 1.32451 1.33440 1.05013 1.20543 1.00032 0.92501 0.87835 1.19080 0.92768 1.09085 1.00546 1.21267 1.00618 0.89524 0.90643 1.21992 0.93931 1.09188 1.02932 1.18883 0.87695 0.89536 0.89312 1.69662 1.42987 1.24924 1.09860 1.41500 1.10916 1.45946 1.21602 0.73356 1.22032 0.96144 0.91335 0.87405 0.95646 0.95610 0.92717 0.92951 0.84967 0.94897 0.91422 0.84849 0.83545 0.83698 0.79091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.52 9.19 71.98 0.66 -4.86 16 2 C 0.21 10.33 2.60 44.17 0.11 10.45 16 3 H -0.02 -1.27 7.80 -2.39 -0.02 -1.29 16 4 C -0.53 -28.18 8.59 25.60 0.22 -27.97 16 5 H 0.06 3.04 7.62 -2.91 -0.02 3.02 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -51.51 11.32 21.45 0.24 -51.27 16 8 Si 0.96 42.37 29.54 68.60 2.03 44.40 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 12 N -0.68 -26.48 6.29 -499.48 -3.14 -29.62 16 13 C 0.12 3.70 5.59 85.56 0.48 4.18 16 14 C -0.21 -5.18 5.36 -20.05 -0.11 -5.28 16 15 C 0.00 0.09 9.73 22.29 0.22 0.31 16 16 C -0.26 -6.12 9.88 22.52 0.22 -5.90 16 17 C 0.42 10.52 7.79 134.40 1.05 11.57 16 18 N -0.84 -22.89 14.20 -55.22 -0.78 -23.68 16 19 N -0.58 -11.97 5.39 -192.38 -1.04 -13.01 16 20 H 0.43 6.94 8.92 -92.71 -0.83 6.11 16 21 C 0.16 3.20 10.79 83.24 0.90 4.10 16 22 H 0.02 1.06 7.45 -2.38 -0.02 1.05 16 23 H 0.02 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.05 2.91 6.07 -2.39 -0.01 2.90 16 25 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 26 H 0.33 12.46 8.22 -89.69 -0.74 11.72 16 27 H 0.03 0.98 7.98 -2.39 -0.02 0.96 16 28 H 0.07 2.15 7.38 -2.39 -0.02 2.13 16 29 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 31 H 0.35 8.66 8.75 -92.70 -0.81 7.85 16 32 H 0.19 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -62.05 273.71 0.28 -61.77 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -1.22 Total: 23.60 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 4.20 Total: -12.20 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -4.72 Total: -117.57 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -62.05 0.28 -61.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389297281.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.495 kcal (2) G-P(sol) polarization free energy of solvation -62.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds