Wall clock time and date at job start Sun Mar 29 2020 21:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46508 * 109.46814 * 2 1 4 4 C 1.36683 * 119.99862 * 96.19419 * 3 2 1 5 5 H 1.08002 * 119.99914 * 163.27460 * 4 3 2 6 6 C 1.39181 * 120.00111 * 343.27694 * 4 3 2 7 7 N 1.31274 * 120.00151 * 345.42153 * 6 4 3 8 8 Si 1.86801 * 120.00131 * 165.41956 * 6 4 3 9 9 H 1.48504 * 109.46931 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47138 * 119.99961 * 8 6 4 11 11 H 1.48503 * 109.46946 * 240.00106 * 8 6 4 12 12 C 1.34775 * 120.00014 * 276.19459 * 3 2 1 13 13 O 1.21543 * 119.99928 * 183.83995 * 12 3 2 14 14 C 1.48236 * 120.00172 * 3.56328 * 12 3 2 15 15 C 1.39668 * 120.56030 * 187.47183 * 14 12 3 16 16 C 1.38680 * 118.25923 * 179.97438 * 15 14 12 17 17 N 1.32252 * 119.15735 * 359.97438 * 16 15 14 18 18 C 1.31894 * 121.06309 * 0.02562 * 17 16 15 19 19 N 1.31573 * 121.92132 * 359.72848 * 18 17 16 20 20 H 1.08995 * 109.46538 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47446 * 299.99935 * 1 2 3 22 22 H 1.08996 * 109.46738 * 60.00315 * 1 2 3 23 23 H 1.09003 * 109.47630 * 240.00416 * 2 1 3 24 24 H 1.08996 * 109.47450 * 119.99461 * 2 1 3 25 25 H 0.96996 * 120.00217 * 180.02562 * 7 6 4 26 26 H 1.08001 * 120.87364 * 0.02562 * 15 14 12 27 27 H 1.07997 * 120.41855 * 180.02562 * 16 15 14 28 28 H 1.08003 * 119.03732 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3665 1.9831 1.1768 5 1 2.9693 2.8791 1.1674 6 6 1.9442 1.4411 2.3872 7 7 0.9914 0.5382 2.4053 8 14 2.7333 1.9982 3.9861 9 1 3.7740 3.0170 3.6957 10 1 1.6966 2.5884 4.8703 11 1 3.3563 0.8325 4.6631 12 6 2.1241 2.0586 -1.1604 13 8 2.5945 3.1793 -1.1691 14 6 1.6726 1.4345 -2.4268 15 6 1.9171 2.0579 -3.6525 16 6 1.4742 1.4314 -4.8077 17 7 0.8409 0.2744 -4.7110 18 6 0.6260 -0.2877 -3.5374 19 7 1.0320 0.2670 -2.4155 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5137 0.8900 25 1 0.6968 0.1608 3.2488 26 1 2.4383 3.0027 -3.6995 27 1 1.6449 1.8823 -5.7741 28 1 0.1051 -1.2329 -3.4964 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396915260.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:52 Heat of formation + Delta-G solvation = 48.815059 kcal Electronic energy + Delta-G solvation = -15090.778489 eV Core-core repulsion = 12529.720154 eV Total energy + Delta-G solvation = -2561.058335 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.59427 -38.23402 -35.23414 -33.41517 -31.69320 -31.45695 -29.32495 -25.97190 -24.05561 -23.69170 -22.08696 -20.05100 -17.45297 -16.81962 -16.62683 -15.33673 -14.95300 -14.60068 -14.31192 -14.14383 -13.40832 -13.39545 -12.72249 -12.46098 -11.85110 -11.28088 -11.15244 -10.82908 -10.52438 -10.39833 -10.35719 -10.16309 -9.54910 -9.24461 -8.98505 -8.92905 -8.33957 -7.78145 -6.47952 -3.96535 1.11602 1.39759 3.05223 3.15632 3.22659 3.70744 3.94374 4.42117 4.48458 4.51239 4.71479 5.04058 5.30462 5.46576 5.57878 5.94906 6.16515 6.55059 6.76464 6.83268 6.92883 7.14434 7.27316 7.34012 7.46336 7.87902 7.94908 8.34702 8.49226 9.00230 9.23530 9.85835 10.41890 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.050690 B = 0.009114 C = 0.007902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.246618 B = 3071.491165 C = 3542.392617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.128 3.872 3 N -0.391 5.391 4 C -0.295 4.295 5 H 0.109 0.891 6 C 0.031 3.969 7 N -0.843 5.843 8 Si 0.933 3.067 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.453 3.547 13 O -0.596 6.596 14 C 0.158 3.842 15 C -0.191 4.191 16 C 0.133 3.867 17 N -0.535 5.535 18 C 0.275 3.725 19 N -0.485 5.485 20 H 0.031 0.969 21 H 0.084 0.916 22 H 0.031 0.969 23 H 0.060 0.940 24 H 0.084 0.916 25 H 0.272 0.728 26 H 0.150 0.850 27 H 0.163 0.837 28 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.604 -3.044 -5.990 6.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.005 3.995 3 N -0.105 5.105 4 C -0.424 4.424 5 H 0.127 0.873 6 C -0.176 4.176 7 N -0.481 5.481 8 Si 0.758 3.242 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.203 1.203 12 C 0.242 3.758 13 O -0.483 6.483 14 C 0.012 3.988 15 C -0.214 4.214 16 C -0.032 4.032 17 N -0.251 5.251 18 C -0.013 4.013 19 N -0.203 5.203 20 H 0.050 0.950 21 H 0.103 0.897 22 H 0.050 0.950 23 H 0.078 0.922 24 H 0.102 0.898 25 H 0.083 0.917 26 H 0.168 0.832 27 H 0.181 0.819 28 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.939 -3.504 -5.747 6.796 hybrid contribution 0.539 0.802 0.656 1.168 sum -0.400 -2.702 -5.091 5.778 Atomic orbital electron populations 1.21998 0.95984 0.99423 1.01402 1.21651 0.95552 0.81882 1.00390 1.43898 1.49782 1.11677 1.05136 1.20025 1.29417 1.10997 0.81991 0.87322 1.25529 0.95330 0.96595 1.00112 1.70099 1.23578 1.26957 1.27442 0.85755 0.79295 0.78825 0.80283 1.18888 1.20425 1.20290 1.17394 0.89343 0.86293 0.82724 1.90602 1.52602 1.19594 1.85499 1.22204 0.91449 0.89634 0.95523 1.22827 1.02262 1.03116 0.93230 1.23064 0.91195 0.90405 0.98487 1.68258 1.15590 1.11456 1.29773 1.24981 0.94023 0.99127 0.83179 1.69301 1.10520 1.10122 1.30337 0.95033 0.89735 0.94983 0.92202 0.89798 0.91727 0.83211 0.81947 0.79318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.93 37.16 0.33 -2.54 15 2 C 0.13 2.98 4.86 -4.04 -0.02 2.96 15 3 N -0.39 -10.19 2.63 -115.75 -0.30 -10.49 15 4 C -0.29 -7.98 9.40 -15.04 -0.14 -8.12 15 5 H 0.11 3.07 7.30 -52.49 -0.38 2.68 15 6 C 0.03 0.76 5.06 -17.44 -0.09 0.68 15 7 N -0.84 -20.84 8.07 55.51 0.45 -20.39 15 8 Si 0.93 19.52 29.58 -169.99 -5.03 14.49 15 9 H -0.26 -5.60 7.11 56.52 0.40 -5.19 15 10 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 11 H -0.28 -5.67 7.11 56.52 0.40 -5.27 15 12 C 0.45 11.64 7.57 -12.15 -0.09 11.55 15 13 O -0.60 -16.77 16.08 5.33 0.09 -16.68 15 14 C 0.16 3.38 6.49 -82.64 -0.54 2.85 15 15 C -0.19 -3.41 9.72 -38.88 -0.38 -3.79 15 16 C 0.13 2.00 11.31 -17.21 -0.19 1.80 15 17 N -0.54 -8.56 10.42 -14.61 -0.15 -8.71 15 18 C 0.28 4.49 12.28 -92.26 -1.13 3.36 15 19 N -0.49 -9.44 4.14 -11.15 -0.05 -9.49 15 20 H 0.03 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.08 2.08 5.93 -51.93 -0.31 1.78 15 22 H 0.03 0.70 6.15 -51.93 -0.32 0.38 15 23 H 0.06 1.32 5.73 -51.93 -0.30 1.02 15 24 H 0.08 2.05 6.11 -51.93 -0.32 1.74 15 25 H 0.27 6.28 8.31 -40.82 -0.34 5.94 15 26 H 0.15 2.57 7.75 -52.49 -0.41 2.16 15 27 H 0.16 1.76 8.06 -52.49 -0.42 1.34 15 28 H 0.19 2.41 8.06 -52.48 -0.42 1.98 15 LS Contribution 239.39 15.07 3.61 3.61 Total: -1.00 -29.51 239.39 -6.08 -35.58 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -2.44 Total: 3.35 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -2.25 Total: 8.74 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.05 Total: -49.08 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.09 Total: -16.68 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.51 -6.08 -35.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396915260.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.399 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds