Wall clock time and date at job start Sun Mar 29 2020 21:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46508 * 109.46814 * 2 1 4 4 C 1.36683 * 119.99862 * 96.19419 * 3 2 1 5 5 H 1.08002 * 119.99914 * 163.27460 * 4 3 2 6 6 C 1.39181 * 120.00111 * 343.27694 * 4 3 2 7 7 N 1.31274 * 120.00151 * 345.42153 * 6 4 3 8 8 Si 1.86801 * 120.00131 * 165.41956 * 6 4 3 9 9 H 1.48504 * 109.46931 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47138 * 119.99961 * 8 6 4 11 11 H 1.48503 * 109.46946 * 240.00106 * 8 6 4 12 12 C 1.34775 * 120.00014 * 276.19459 * 3 2 1 13 13 O 1.21543 * 119.99928 * 183.83995 * 12 3 2 14 14 C 1.48236 * 120.00172 * 3.56328 * 12 3 2 15 15 C 1.39668 * 120.56030 * 187.47183 * 14 12 3 16 16 C 1.38680 * 118.25923 * 179.97438 * 15 14 12 17 17 N 1.32252 * 119.15735 * 359.97438 * 16 15 14 18 18 C 1.31894 * 121.06309 * 0.02562 * 17 16 15 19 19 N 1.31573 * 121.92132 * 359.72848 * 18 17 16 20 20 H 1.08995 * 109.46538 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47446 * 299.99935 * 1 2 3 22 22 H 1.08996 * 109.46738 * 60.00315 * 1 2 3 23 23 H 1.09003 * 109.47630 * 240.00416 * 2 1 3 24 24 H 1.08996 * 109.47450 * 119.99461 * 2 1 3 25 25 H 0.96996 * 120.00217 * 180.02562 * 7 6 4 26 26 H 1.08001 * 120.87364 * 0.02562 * 15 14 12 27 27 H 1.07997 * 120.41855 * 180.02562 * 16 15 14 28 28 H 1.08003 * 119.03732 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3665 1.9831 1.1768 5 1 2.9693 2.8791 1.1674 6 6 1.9442 1.4411 2.3872 7 7 0.9914 0.5382 2.4053 8 14 2.7333 1.9982 3.9861 9 1 3.7740 3.0170 3.6957 10 1 1.6966 2.5884 4.8703 11 1 3.3563 0.8325 4.6631 12 6 2.1241 2.0586 -1.1604 13 8 2.5945 3.1793 -1.1691 14 6 1.6726 1.4345 -2.4268 15 6 1.9171 2.0579 -3.6525 16 6 1.4742 1.4314 -4.8077 17 7 0.8409 0.2744 -4.7110 18 6 0.6260 -0.2877 -3.5374 19 7 1.0320 0.2670 -2.4155 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5137 0.8900 25 1 0.6968 0.1608 3.2488 26 1 2.4383 3.0027 -3.6995 27 1 1.6449 1.8823 -5.7741 28 1 0.1051 -1.2329 -3.4964 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396915260.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:52 Heat of formation + Delta-G solvation = 31.080406 kcal Electronic energy + Delta-G solvation = -15091.547521 eV Core-core repulsion = 12529.720154 eV Total energy + Delta-G solvation = -2561.827367 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.07269 -40.06512 -37.19185 -34.93487 -33.53947 -32.88553 -31.17667 -27.77156 -25.64829 -25.12518 -23.91934 -21.75741 -19.19097 -18.57055 -18.18213 -17.09613 -16.39900 -16.24085 -15.95109 -15.87554 -15.13959 -14.90386 -14.55238 -14.09818 -13.63801 -13.07168 -12.87131 -12.67476 -12.19006 -12.11812 -11.97475 -11.73200 -11.29233 -10.88706 -10.78413 -10.61664 -9.98093 -9.68189 -8.35348 -5.99168 -0.38536 0.08838 1.37405 1.42566 1.56421 1.99913 2.21560 2.76522 2.87511 3.13435 3.24657 3.32417 3.76781 3.99988 4.17721 4.66586 4.70284 4.82734 5.01839 5.14104 5.29625 5.34271 5.43472 5.59410 5.93379 5.99456 6.03476 6.45862 7.01843 7.11942 7.32645 7.91436 8.53485 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.050690 B = 0.009114 C = 0.007902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.246618 B = 3071.491165 C = 3542.392617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.137 3.863 3 N -0.407 5.407 4 C -0.348 4.348 5 H 0.080 0.920 6 C 0.005 3.995 7 N -0.854 5.854 8 Si 0.997 3.003 9 H -0.274 1.274 10 H -0.271 1.271 11 H -0.263 1.263 12 C 0.440 3.560 13 O -0.635 6.635 14 C 0.133 3.867 15 C -0.192 4.192 16 C 0.159 3.841 17 N -0.527 5.527 18 C 0.278 3.722 19 N -0.501 5.501 20 H 0.056 0.944 21 H 0.057 0.943 22 H 0.030 0.970 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.279 0.721 26 H 0.153 0.847 27 H 0.214 0.786 28 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.266 -4.283 -7.516 8.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.014 3.986 3 N -0.120 5.120 4 C -0.476 4.476 5 H 0.098 0.902 6 C -0.200 4.200 7 N -0.491 5.491 8 Si 0.820 3.180 9 H -0.199 1.199 10 H -0.196 1.196 11 H -0.187 1.187 12 C 0.230 3.770 13 O -0.525 6.525 14 C -0.013 4.013 15 C -0.215 4.215 16 C -0.008 4.008 17 N -0.242 5.242 18 C -0.009 4.009 19 N -0.219 5.219 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.049 0.951 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.170 0.830 27 H 0.231 0.769 28 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -1.628 -4.789 -7.260 8.848 hybrid contribution 0.688 1.151 0.884 1.606 sum -0.940 -3.638 -6.376 7.401 Atomic orbital electron populations 1.21808 0.95042 1.00470 0.99861 1.21638 0.96146 0.80683 1.00090 1.44080 1.50341 1.12555 1.05070 1.19907 1.32129 1.11921 0.83677 0.90181 1.26233 0.95216 0.96383 1.02211 1.70164 1.23390 1.26956 1.28544 0.84829 0.78240 0.78545 0.76399 1.19883 1.19605 1.18720 1.18133 0.88485 0.86153 0.84203 1.90538 1.53964 1.21382 1.86635 1.21716 0.93622 0.91327 0.94601 1.22995 1.02262 1.03286 0.92991 1.23817 0.88435 0.89263 0.99266 1.68428 1.14900 1.11530 1.29309 1.25710 0.93046 0.99866 0.82288 1.69140 1.10896 1.09633 1.32242 0.92544 0.92472 0.95149 0.90849 0.91476 0.91001 0.82968 0.76916 0.75643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.00 8.93 71.98 0.64 -4.35 15 2 C 0.14 6.43 4.86 86.38 0.42 6.85 15 3 N -0.41 -22.03 2.63 -638.42 -1.68 -23.71 15 4 C -0.35 -19.80 9.40 84.16 0.79 -19.00 15 5 H 0.08 4.87 7.30 -2.91 -0.02 4.85 15 6 C 0.00 0.25 5.06 85.00 0.43 0.68 15 7 N -0.85 -42.74 8.07 21.70 0.18 -42.56 15 8 Si 1.00 40.75 29.58 68.60 2.03 42.78 15 9 H -0.27 -11.51 7.11 99.48 0.71 -10.81 15 10 H -0.27 -10.68 7.11 99.48 0.71 -9.97 15 11 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 12 C 0.44 23.43 7.57 86.90 0.66 24.09 15 13 O -0.64 -37.53 16.08 -3.85 -0.06 -37.59 15 14 C 0.13 5.61 6.49 41.95 0.27 5.89 15 15 C -0.19 -6.51 9.72 22.72 0.22 -6.29 15 16 C 0.16 4.07 11.31 84.74 0.96 5.03 15 17 N -0.53 -14.53 10.42 -200.12 -2.09 -16.61 15 18 C 0.28 8.09 12.28 180.92 2.22 10.31 15 19 N -0.50 -18.67 4.14 -189.19 -0.78 -19.45 15 20 H 0.06 2.13 8.14 -2.39 -0.02 2.11 15 21 H 0.06 2.84 5.93 -2.39 -0.01 2.83 15 22 H 0.03 1.31 6.15 -2.39 -0.01 1.30 15 23 H 0.07 3.21 5.73 -2.39 -0.01 3.20 15 24 H 0.07 3.35 6.11 -2.39 -0.01 3.33 15 25 H 0.28 12.85 8.31 -92.71 -0.77 12.08 15 26 H 0.15 5.06 7.75 -2.91 -0.02 5.04 15 27 H 0.21 3.31 8.06 -2.91 -0.02 3.29 15 28 H 0.23 4.71 8.06 -2.91 -0.02 4.69 15 Total: -1.00 -66.74 239.39 5.39 -61.35 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 1.18 Total: 12.59 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 6.61 Total: 23.21 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -4.37 Total: -102.34 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -0.06 Total: -37.59 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -66.74 5.39 -61.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396915260.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.428 kcal (2) G-P(sol) polarization free energy of solvation -66.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds