Wall clock time and date at job start Sun Mar 29 2020 21:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46912 * 176.13545 * 3 2 1 5 5 C 1.37098 * 119.99964 * 264.13812 * 4 3 2 6 6 H 1.08000 * 120.00315 * 197.43365 * 5 4 3 7 7 C 1.38951 * 119.99877 * 17.43934 * 5 4 3 8 8 N 1.31407 * 120.00124 * 21.52106 * 7 5 4 9 9 Si 1.86801 * 119.99781 * 201.52102 * 7 5 4 10 10 H 1.48506 * 109.47298 * 60.00063 * 9 7 5 11 11 H 1.48505 * 109.46922 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47433 * 300.00016 * 9 7 5 13 13 C 1.34776 * 120.00047 * 84.13871 * 4 3 2 14 14 O 1.21293 * 119.99695 * 180.02562 * 13 4 3 15 15 C 1.50701 * 120.00079 * 359.97438 * 13 4 3 16 16 C 1.53005 * 109.47116 * 179.97438 * 15 13 4 17 17 C 1.53000 * 109.47044 * 179.97438 * 16 15 13 18 18 C 1.52997 * 117.50232 * 243.74850 * 17 16 15 19 19 C 1.53001 * 117.49599 * 175.08768 * 17 16 15 20 20 H 4.40642 * 5.51383 * 180.02562 * 4 1 2 21 21 H 1.08993 * 109.47353 * 56.13495 * 3 2 1 22 22 H 1.08998 * 109.47129 * 296.13102 * 3 2 1 23 23 H 0.97002 * 120.00295 * 180.02562 * 8 7 5 24 24 H 1.09004 * 109.46661 * 60.00363 * 15 13 4 25 25 H 1.08996 * 109.47315 * 300.00105 * 15 13 4 26 26 H 1.09007 * 109.46757 * 60.00168 * 16 15 13 27 27 H 1.08996 * 109.47165 * 300.00260 * 16 15 13 28 28 H 1.09002 * 115.54557 * 29.42417 * 17 16 15 29 29 H 1.08999 * 117.49473 * 359.97438 * 18 17 16 30 30 H 1.08997 * 117.49952 * 145.02478 * 18 17 16 31 31 H 1.09008 * 117.49317 * 214.98021 * 19 17 16 32 32 H 1.08990 * 117.50171 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3790 -0.0931 5 6 3.4763 1.9040 -1.3123 6 1 4.0883 2.7923 -1.3651 7 6 3.0359 1.2934 -2.4802 8 7 1.9850 0.5050 -2.4535 9 14 3.9379 1.5932 -4.0883 10 1 5.3469 1.1426 -3.9571 11 1 3.2746 0.8320 -5.1773 12 1 3.9097 3.0430 -4.4089 13 6 3.2456 2.1308 1.0199 14 8 3.6489 3.2721 0.9426 15 6 2.8685 1.5539 2.3600 16 6 3.0882 2.6065 3.4485 17 6 2.7048 2.0210 4.8090 18 6 1.5311 2.6648 5.5498 19 6 2.9624 2.8826 6.0468 20 1 -1.0502 -0.0004 0.0002 21 1 3.0097 -0.5718 -0.8533 22 1 3.0096 -0.4518 0.9226 23 1 1.6778 0.0784 -3.2687 24 1 3.4890 0.6820 2.5677 25 1 1.8195 1.2584 2.3462 26 1 2.4682 3.4787 3.2409 27 1 4.1374 2.9016 3.4621 28 1 2.8337 0.9433 4.9101 29 1 1.0324 3.5058 5.0681 30 1 0.8880 2.0108 6.1387 31 1 3.2603 2.3716 6.9625 32 1 3.4047 3.8666 5.8919 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401025748.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:17 Heat of formation + Delta-G solvation = 27.729046 kcal Electronic energy + Delta-G solvation = -14738.910845 eV Core-core repulsion = 12280.478495 eV Total energy + Delta-G solvation = -2458.432349 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.57693 -38.38653 -37.04867 -34.14130 -33.01544 -32.77889 -28.33730 -27.14378 -25.05449 -23.17402 -21.33217 -20.61157 -19.67037 -18.38462 -17.84974 -16.64042 -16.51110 -16.14513 -15.88817 -15.06384 -14.90088 -14.19764 -13.95469 -13.85257 -13.51286 -13.01704 -12.69794 -12.54079 -12.37045 -12.22239 -12.09578 -12.05501 -11.17286 -11.12576 -11.07054 -10.72716 -10.62206 -10.27203 -9.82058 -8.31498 -5.91950 1.38069 1.42376 1.52161 1.91428 2.16469 2.33740 2.39919 2.95076 3.05682 3.21921 3.82626 3.92082 3.99094 4.09645 4.16390 4.38356 4.45737 4.60484 4.73723 4.83161 4.88473 4.98069 5.08883 5.13169 5.22760 5.32367 5.44018 5.47215 5.48481 6.07502 6.46377 7.15106 7.16778 7.44670 8.01881 8.66914 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.040031 B = 0.007286 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.296187 B = 3841.930732 C = 4353.474818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.153 4.153 3 C 0.234 3.766 4 N -0.455 5.455 5 C -0.356 4.356 6 H 0.072 0.928 7 C 0.003 3.997 8 N -0.872 5.872 9 Si 0.983 3.017 10 H -0.266 1.266 11 H -0.272 1.272 12 H -0.281 1.281 13 C 0.436 3.564 14 O -0.634 6.634 15 C -0.114 4.114 16 C -0.062 4.062 17 C -0.159 4.159 18 C -0.182 4.182 19 C -0.175 4.175 20 H 0.233 0.767 21 H 0.092 0.908 22 H 0.101 0.899 23 H 0.272 0.728 24 H 0.105 0.895 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.120 0.880 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.188 -4.317 10.654 11.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.155 4.155 3 C 0.111 3.889 4 N -0.173 5.173 5 C -0.484 4.484 6 H 0.090 0.910 7 C -0.200 4.200 8 N -0.509 5.509 9 Si 0.807 3.193 10 H -0.191 1.191 11 H -0.197 1.197 12 H -0.207 1.207 13 C 0.227 3.773 14 O -0.522 6.522 15 C -0.154 4.154 16 C -0.100 4.100 17 C -0.177 4.177 18 C -0.219 4.219 19 C -0.212 4.212 20 H 0.249 0.751 21 H 0.110 0.890 22 H 0.118 0.882 23 H 0.082 0.918 24 H 0.124 0.876 25 H 0.106 0.894 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.138 0.862 29 H 0.102 0.898 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.081 -3.904 10.452 11.210 hybrid contribution 0.029 0.401 -1.283 1.345 sum -1.053 -3.503 9.169 9.872 Atomic orbital electron populations 1.25148 0.96362 1.00213 1.04828 1.23477 0.95028 1.00061 0.96907 1.18325 0.84594 0.83807 1.02150 1.43958 1.56060 1.11219 1.06062 1.19530 1.31846 1.13722 0.83270 0.90964 1.25961 0.95423 0.96834 1.01828 1.70172 1.19825 1.30970 1.29959 0.85160 0.78846 0.78074 0.77192 1.19142 1.19651 1.20656 1.21232 0.82795 0.85823 0.87497 1.90463 1.53147 1.20700 1.87850 1.21496 1.03122 1.00205 0.90542 1.20751 1.00912 0.96575 0.91792 1.22320 1.04308 0.99471 0.91588 1.23115 0.91481 1.03311 1.03959 1.23046 0.98956 1.01269 0.97914 0.75087 0.89039 0.88159 0.91798 0.87645 0.89448 0.93831 0.92586 0.86185 0.89843 0.87168 0.86888 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.79 19.25 74.32 1.43 -8.36 16 2 C -0.15 -6.73 10.87 31.12 0.34 -6.39 16 3 C 0.23 10.27 4.91 84.57 0.42 10.68 16 4 N -0.46 -23.65 2.60 -645.43 -1.68 -25.33 16 5 C -0.36 -20.46 9.33 84.04 0.78 -19.67 16 6 H 0.07 4.48 7.38 -2.91 -0.02 4.46 16 7 C 0.00 0.16 4.87 84.93 0.41 0.57 16 8 N -0.87 -45.89 9.48 21.66 0.21 -45.68 16 9 Si 0.98 42.49 29.60 68.60 2.03 44.52 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 11 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 C 0.44 21.84 7.56 87.66 0.66 22.50 16 14 O -0.63 -37.02 15.63 -3.07 -0.05 -37.07 16 15 C -0.11 -4.15 4.26 29.85 0.13 -4.02 16 16 C -0.06 -2.09 4.79 30.60 0.15 -1.94 16 17 C -0.16 -3.92 5.73 -10.79 -0.06 -3.98 16 18 C -0.18 -4.00 10.18 30.62 0.31 -3.69 16 19 C -0.17 -3.68 10.25 30.62 0.31 -3.36 16 20 H 0.23 7.12 7.80 -4.41 -0.03 7.08 16 21 H 0.09 4.28 6.44 -2.39 -0.02 4.27 16 22 H 0.10 3.51 6.69 -2.39 -0.02 3.50 16 23 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 24 H 0.11 3.19 7.42 -2.38 -0.02 3.17 16 25 H 0.09 3.08 7.50 -2.39 -0.02 3.06 16 26 H 0.04 1.63 7.83 -2.38 -0.02 1.61 16 27 H 0.06 2.00 8.10 -2.39 -0.02 1.98 16 28 H 0.12 2.56 8.08 -2.39 -0.02 2.54 16 29 H 0.08 2.00 8.03 -2.39 -0.02 1.98 16 30 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -68.09 278.65 6.48 -61.61 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 1.09 Total: 19.62 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 4.88 Total: -17.67 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -1.47 Total: -71.02 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -0.05 Total: -37.07 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -68.09 6.48 -61.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401025748.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.339 kcal (2) G-P(sol) polarization free energy of solvation -68.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds