Wall clock time and date at job start Sun Mar 29 2020 21:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46913 * 34.42791 * 3 2 1 5 5 C 1.37098 * 120.00168 * 264.10737 * 4 3 2 6 6 H 1.08003 * 119.99854 * 203.18830 * 5 4 3 7 7 C 1.38947 * 120.00006 * 23.18456 * 5 4 3 8 8 N 1.31406 * 119.99843 * 11.50032 * 7 5 4 9 9 Si 1.86798 * 120.00048 * 191.49290 * 7 5 4 10 10 H 1.48505 * 109.47075 * 90.00317 * 9 7 5 11 11 H 1.48506 * 109.47294 * 210.00439 * 9 7 5 12 12 H 1.48501 * 109.47322 * 330.00510 * 9 7 5 13 13 C 1.34783 * 119.99716 * 84.11151 * 4 3 2 14 14 O 1.21291 * 119.99527 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00062 * 359.97438 * 13 4 3 16 16 C 1.52995 * 109.46941 * 176.24064 * 15 13 4 17 17 C 1.53004 * 115.55142 * 279.90772 * 16 15 13 18 18 C 1.52998 * 117.50129 * 134.20382 * 16 15 13 19 19 C 1.52999 * 117.50136 * 65.57818 * 16 15 13 20 20 H 4.40631 * 5.51334 * 179.97438 * 4 1 2 21 21 H 1.09002 * 109.47060 * 274.43418 * 3 2 1 22 22 H 1.09000 * 109.47197 * 154.42938 * 3 2 1 23 23 H 0.96999 * 120.00307 * 179.97438 * 8 7 5 24 24 H 1.09001 * 109.46824 * 296.23966 * 15 13 4 25 25 H 1.08994 * 109.46790 * 56.23759 * 15 13 4 26 26 H 1.09005 * 109.47082 * 63.97868 * 17 16 15 27 27 H 1.08996 * 109.47117 * 183.97933 * 17 16 15 28 28 H 1.09005 * 109.46879 * 303.98399 * 17 16 15 29 29 H 1.09004 * 117.49622 * 359.97438 * 18 16 15 30 30 H 1.08995 * 117.50341 * 145.01606 * 18 16 15 31 31 H 1.09000 * 117.49947 * 214.97692 * 19 16 15 32 32 H 1.09004 * 117.49620 * 0.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1384 -0.7809 5 6 3.4787 -2.3056 -0.1492 6 1 4.1663 -2.9923 -0.6205 7 6 2.9429 -2.6049 1.0973 8 7 1.9440 -1.8944 1.5709 9 14 3.6422 -4.0174 2.0999 10 1 4.7373 -3.5140 2.9675 11 1 2.5705 -4.6028 2.9450 12 1 4.1747 -5.0582 1.1844 13 6 3.2464 -1.0389 -2.1204 14 8 3.6516 -1.9818 -2.7669 15 6 2.8679 0.2439 -2.8148 16 6 3.1749 0.1248 -4.3089 17 6 4.6382 0.3395 -4.7012 18 6 2.1027 0.6016 -5.2907 19 6 2.3694 -0.8949 -5.1166 20 1 -1.0498 -0.0003 0.0000 21 1 3.0094 -0.0786 1.0246 22 1 3.0089 0.9278 -0.4436 23 1 1.5696 -2.1035 2.4409 24 1 1.8031 0.4314 -2.6765 25 1 3.4402 1.0690 -2.3909 26 1 5.2522 -0.4436 -4.2565 27 1 4.7325 0.3030 -5.7864 28 1 4.9721 1.3122 -4.3398 29 1 1.1784 0.9998 -4.8721 30 1 2.4395 1.0685 -6.2162 31 1 2.8818 -1.4125 -5.9276 32 1 1.6205 -1.4806 -4.5835 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401303692.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:03 Heat of formation + Delta-G solvation = 51.214210 kcal Electronic energy + Delta-G solvation = -15163.967299 eV Core-core repulsion = 12706.553342 eV Total energy + Delta-G solvation = -2457.413956 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.00959 -37.08120 -34.91533 -32.06631 -31.14641 -29.08756 -27.69014 -26.28229 -24.26301 -21.98479 -19.87333 -18.09769 -17.69037 -16.55013 -15.97069 -15.05267 -14.52174 -14.45438 -13.86625 -13.60850 -12.82151 -12.58815 -12.26264 -12.03491 -11.89401 -11.57938 -11.27888 -11.09236 -11.02373 -10.63490 -10.44275 -10.30582 -9.77385 -9.37418 -9.24664 -9.19552 -8.79021 -8.25097 -7.75748 -6.23512 -3.86027 3.18428 3.27209 3.32106 3.75572 3.98676 4.12724 4.15310 4.28030 5.02559 5.11801 5.16462 5.26437 5.41723 5.50358 5.56013 5.95269 5.96736 6.00923 6.09882 6.25138 6.31450 6.37933 6.41823 6.54990 6.60938 6.74640 6.84522 7.10313 7.59891 8.15196 8.50277 8.87800 9.21038 9.42239 9.99886 10.76114 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033503 B = 0.009206 C = 0.007898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.542275 B = 3040.774047 C = 3544.471919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.104 4.104 3 C 0.234 3.766 4 N -0.449 5.449 5 C -0.308 4.308 6 H 0.100 0.900 7 C 0.028 3.972 8 N -0.874 5.874 9 Si 0.925 3.075 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.459 3.541 14 O -0.573 6.573 15 C -0.099 4.099 16 C -0.101 4.101 17 C -0.109 4.109 18 C -0.189 4.189 19 C -0.150 4.150 20 H 0.197 0.803 21 H 0.110 0.890 22 H 0.058 0.942 23 H 0.267 0.733 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.330 6.811 -5.362 8.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.106 4.106 3 C 0.110 3.890 4 N -0.168 5.168 5 C -0.436 4.436 6 H 0.118 0.882 7 C -0.175 4.175 8 N -0.512 5.512 9 Si 0.752 3.248 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.195 1.195 13 C 0.247 3.753 14 O -0.455 6.455 15 C -0.139 4.139 16 C -0.101 4.101 17 C -0.166 4.166 18 C -0.226 4.226 19 C -0.187 4.187 20 H 0.214 0.786 21 H 0.128 0.872 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.463 6.310 -5.489 8.376 hybrid contribution -0.249 -0.702 0.824 1.111 sum 0.213 5.608 -4.665 7.298 Atomic orbital electron populations 1.24223 0.95349 1.04562 1.04856 1.23197 0.94362 0.96425 0.96580 1.18239 0.84211 0.87627 0.98897 1.43681 1.56920 1.12174 1.04068 1.19637 1.25036 0.98223 1.00667 0.88233 1.25347 0.95123 0.98622 0.98388 1.69961 1.21830 1.40264 1.19189 0.85945 0.78292 0.81086 0.79478 1.20448 1.21103 1.19520 1.20115 0.83524 0.89427 0.82197 1.90512 1.50169 1.40524 1.64333 1.21162 1.02053 0.97743 0.92932 1.21004 0.92997 1.04414 0.91715 1.21252 0.93853 1.01390 1.00064 1.23159 1.00188 0.98490 1.00757 1.22763 1.02898 0.90973 1.02037 0.78579 0.87210 0.92367 0.92251 0.90161 0.90272 0.91432 0.93211 0.92918 0.89309 0.89390 0.89420 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.72 19.25 29.55 0.57 -5.15 16 2 C -0.10 -2.36 10.81 -37.12 -0.40 -2.76 16 3 C 0.23 5.21 4.91 -6.83 -0.03 5.18 16 4 N -0.45 -11.38 2.60 -117.93 -0.31 -11.69 16 5 C -0.31 -8.51 9.27 -14.93 -0.14 -8.65 16 6 H 0.10 2.89 7.42 -52.48 -0.39 2.50 16 7 C 0.03 0.74 5.07 -17.47 -0.09 0.65 16 8 N -0.87 -23.16 9.12 55.50 0.51 -22.65 16 9 Si 0.92 20.86 29.57 -169.99 -5.03 15.83 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.46 11.09 7.47 -10.98 -0.08 11.01 16 14 O -0.57 -15.52 14.80 5.55 0.08 -15.44 16 15 C -0.10 -1.87 4.30 -27.89 -0.12 -1.99 16 16 C -0.10 -1.72 1.62 -154.51 -0.25 -1.97 16 17 C -0.11 -1.67 9.70 37.16 0.36 -1.31 16 18 C -0.19 -2.72 9.87 -26.73 -0.26 -2.98 16 19 C -0.15 -2.57 8.97 -26.73 -0.24 -2.81 16 20 H 0.20 3.40 7.80 -54.10 -0.42 2.98 16 21 H 0.11 2.59 6.55 -51.93 -0.34 2.25 16 22 H 0.06 1.08 6.58 -51.93 -0.34 0.74 16 23 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 24 H 0.08 1.50 7.49 -51.93 -0.39 1.11 16 25 H 0.08 1.33 7.20 -51.93 -0.37 0.95 16 26 H 0.07 1.19 7.95 -51.93 -0.41 0.78 16 27 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 LS Contribution 276.70 15.07 4.17 4.17 Total: -1.00 -30.37 276.70 -5.60 -35.96 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -4.33 Total: 4.59 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.69 Total: -10.78 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.20 Total: -34.34 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.08 Total: -15.44 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.37 -5.60 -35.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401303692.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.178 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds