Wall clock time and date at job start Sun Mar 29 2020 21:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46913 * 34.42791 * 3 2 1 5 5 C 1.37098 * 120.00168 * 264.10737 * 4 3 2 6 6 H 1.08003 * 119.99854 * 203.18830 * 5 4 3 7 7 C 1.38947 * 120.00006 * 23.18456 * 5 4 3 8 8 N 1.31406 * 119.99843 * 11.50032 * 7 5 4 9 9 Si 1.86798 * 120.00048 * 191.49290 * 7 5 4 10 10 H 1.48505 * 109.47075 * 90.00317 * 9 7 5 11 11 H 1.48506 * 109.47294 * 210.00439 * 9 7 5 12 12 H 1.48501 * 109.47322 * 330.00510 * 9 7 5 13 13 C 1.34783 * 119.99716 * 84.11151 * 4 3 2 14 14 O 1.21291 * 119.99527 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00062 * 359.97438 * 13 4 3 16 16 C 1.52995 * 109.46941 * 176.24064 * 15 13 4 17 17 C 1.53004 * 115.55142 * 279.90772 * 16 15 13 18 18 C 1.52998 * 117.50129 * 134.20382 * 16 15 13 19 19 C 1.52999 * 117.50136 * 65.57818 * 16 15 13 20 20 H 4.40631 * 5.51334 * 179.97438 * 4 1 2 21 21 H 1.09002 * 109.47060 * 274.43418 * 3 2 1 22 22 H 1.09000 * 109.47197 * 154.42938 * 3 2 1 23 23 H 0.96999 * 120.00307 * 179.97438 * 8 7 5 24 24 H 1.09001 * 109.46824 * 296.23966 * 15 13 4 25 25 H 1.08994 * 109.46790 * 56.23759 * 15 13 4 26 26 H 1.09005 * 109.47082 * 63.97868 * 17 16 15 27 27 H 1.08996 * 109.47117 * 183.97933 * 17 16 15 28 28 H 1.09005 * 109.46879 * 303.98399 * 17 16 15 29 29 H 1.09004 * 117.49622 * 359.97438 * 18 16 15 30 30 H 1.08995 * 117.50341 * 145.01606 * 18 16 15 31 31 H 1.09000 * 117.49947 * 214.97692 * 19 16 15 32 32 H 1.09004 * 117.49620 * 0.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1384 -0.7809 5 6 3.4787 -2.3056 -0.1492 6 1 4.1663 -2.9923 -0.6205 7 6 2.9429 -2.6049 1.0973 8 7 1.9440 -1.8944 1.5709 9 14 3.6422 -4.0174 2.0999 10 1 4.7373 -3.5140 2.9675 11 1 2.5705 -4.6028 2.9450 12 1 4.1747 -5.0582 1.1844 13 6 3.2464 -1.0389 -2.1204 14 8 3.6516 -1.9818 -2.7669 15 6 2.8679 0.2439 -2.8148 16 6 3.1749 0.1248 -4.3089 17 6 4.6382 0.3395 -4.7012 18 6 2.1027 0.6016 -5.2907 19 6 2.3694 -0.8949 -5.1166 20 1 -1.0498 -0.0003 0.0000 21 1 3.0094 -0.0786 1.0246 22 1 3.0089 0.9278 -0.4436 23 1 1.5696 -2.1035 2.4409 24 1 1.8031 0.4314 -2.6765 25 1 3.4402 1.0690 -2.3909 26 1 5.2522 -0.4436 -4.2565 27 1 4.7325 0.3030 -5.7864 28 1 4.9721 1.3122 -4.3398 29 1 1.1784 0.9998 -4.8721 30 1 2.4395 1.0685 -6.2162 31 1 2.8818 -1.4125 -5.9276 32 1 1.6205 -1.4806 -4.5835 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401303692.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:02 Heat of formation + Delta-G solvation = 34.051723 kcal Electronic energy + Delta-G solvation = -15164.711520 eV Core-core repulsion = 12706.553342 eV Total energy + Delta-G solvation = -2458.158178 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.73303 -38.56602 -36.81712 -33.98389 -32.97796 -30.59575 -29.04626 -28.06551 -26.18230 -23.22948 -21.56187 -19.72058 -19.39244 -18.36568 -17.83156 -16.52063 -16.32985 -16.14885 -15.58414 -15.09133 -14.44728 -14.16635 -14.01687 -13.65238 -13.38888 -13.18274 -12.88779 -12.81493 -12.42521 -12.29705 -12.17386 -11.99977 -11.20199 -11.10984 -11.00125 -10.59181 -10.55318 -10.10510 -9.73458 -8.24362 -5.94651 1.37591 1.40913 1.51978 1.97019 2.18622 2.34648 2.42998 2.85212 3.10995 3.41392 3.83071 3.91714 3.94251 4.06913 4.20523 4.40896 4.61534 4.69633 4.81827 4.83426 5.00492 5.04617 5.07248 5.11801 5.22295 5.32996 5.46221 5.47368 5.47809 6.13542 6.51421 7.18186 7.20818 7.48378 8.07182 8.72133 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033503 B = 0.009206 C = 0.007898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.542275 B = 3040.774047 C = 3544.471919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.144 4.144 3 C 0.236 3.764 4 N -0.463 5.463 5 C -0.343 4.343 6 H 0.071 0.929 7 C -0.003 4.003 8 N -0.881 5.881 9 Si 0.985 3.015 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.448 3.552 14 O -0.613 6.613 15 C -0.087 4.087 16 C -0.123 4.123 17 C -0.104 4.104 18 C -0.148 4.148 19 C -0.174 4.174 20 H 0.230 0.770 21 H 0.092 0.908 22 H 0.095 0.905 23 H 0.269 0.731 24 H 0.084 0.916 25 H 0.104 0.896 26 H 0.034 0.966 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.301 8.399 -5.652 10.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.145 4.145 3 C 0.114 3.886 4 N -0.182 5.182 5 C -0.471 4.471 6 H 0.089 0.911 7 C -0.205 4.205 8 N -0.519 5.519 9 Si 0.810 3.190 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.205 1.205 13 C 0.239 3.761 14 O -0.499 6.499 15 C -0.127 4.127 16 C -0.123 4.123 17 C -0.161 4.161 18 C -0.184 4.184 19 C -0.211 4.211 20 H 0.247 0.753 21 H 0.110 0.890 22 H 0.113 0.887 23 H 0.079 0.921 24 H 0.102 0.898 25 H 0.122 0.878 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.136 0.864 31 H 0.110 0.890 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.181 7.933 -5.766 9.809 hybrid contribution -0.106 -1.208 0.907 1.514 sum -0.287 6.726 -4.859 8.302 Atomic orbital electron populations 1.25080 0.96331 1.02921 1.03202 1.23479 0.95014 0.97932 0.98107 1.18280 0.84506 0.87973 0.97880 1.43910 1.57077 1.12360 1.04887 1.19540 1.26122 0.99519 1.01901 0.91090 1.26010 0.95158 1.00720 0.98567 1.70078 1.21816 1.40813 1.19224 0.85050 0.78034 0.78051 0.77865 1.18964 1.20370 1.20536 1.21078 0.82235 0.90907 0.81909 1.90474 1.51742 1.42504 1.65158 1.21111 1.02404 0.95260 0.93941 1.21154 0.94698 1.05499 0.90962 1.21222 0.92247 1.01318 1.01304 1.23230 0.99098 0.95559 1.00557 1.22723 1.03106 0.92741 1.02553 0.75327 0.89042 0.88715 0.92073 0.89800 0.87794 0.94685 0.91083 0.90772 0.88289 0.86356 0.88952 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.35 19.25 74.32 1.43 -8.92 16 2 C -0.14 -6.38 10.81 31.12 0.34 -6.05 16 3 C 0.24 10.48 4.91 84.57 0.42 10.89 16 4 N -0.46 -23.93 2.60 -645.41 -1.67 -25.61 16 5 C -0.34 -19.58 9.27 84.04 0.78 -18.80 16 6 H 0.07 4.35 7.42 -2.91 -0.02 4.33 16 7 C 0.00 -0.13 5.07 84.93 0.43 0.30 16 8 N -0.88 -46.61 9.12 21.66 0.20 -46.42 16 9 Si 0.99 43.17 29.57 68.60 2.03 45.19 16 10 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 13 C 0.45 22.08 7.47 87.66 0.65 22.74 16 14 O -0.61 -34.61 14.80 -3.06 -0.05 -34.66 16 15 C -0.09 -3.20 4.30 29.85 0.13 -3.07 16 16 C -0.12 -3.99 1.62 -52.18 -0.08 -4.07 16 17 C -0.10 -3.02 9.70 71.98 0.70 -2.32 16 18 C -0.15 -3.77 9.87 30.59 0.30 -3.47 16 19 C -0.17 -5.87 8.97 30.59 0.27 -5.60 16 20 H 0.23 7.23 7.80 -4.43 -0.03 7.20 16 21 H 0.09 4.35 6.55 -2.39 -0.02 4.33 16 22 H 0.10 3.39 6.58 -2.39 -0.02 3.37 16 23 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 24 H 0.08 3.01 7.49 -2.39 -0.02 2.99 16 25 H 0.10 3.24 7.20 -2.39 -0.02 3.23 16 26 H 0.03 1.23 7.95 -2.38 -0.02 1.21 16 27 H 0.07 1.73 8.10 -2.39 -0.02 1.71 16 28 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.10 2.35 8.08 -2.38 -0.02 2.33 16 30 H 0.12 2.35 8.14 -2.39 -0.02 2.34 16 31 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 32 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -67.16 276.70 6.96 -60.19 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 1.09 Total: 19.66 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 5.37 Total: -18.37 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -1.48 Total: -72.02 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -0.05 Total: -34.66 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -67.16 6.96 -60.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401303692.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.244 kcal (2) G-P(sol) polarization free energy of solvation -67.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds