Wall clock time and date at job start Sun Mar 29 2020 22:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99775 * 2 1 4 4 H 1.48504 * 109.47099 * 272.08022 * 3 2 1 5 5 H 1.48498 * 109.46940 * 32.08121 * 3 2 1 6 6 H 1.48501 * 109.46892 * 152.08346 * 3 2 1 7 7 C 1.38810 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00071 * 336.78192 * 7 2 1 9 9 N 1.36937 * 120.00012 * 156.77943 * 7 2 1 10 10 C 1.46504 * 120.00161 * 320.89597 * 9 7 2 11 11 C 1.53003 * 109.46582 * 270.00196 * 10 9 7 12 12 C 1.50701 * 109.46761 * 180.02562 * 11 10 9 13 13 C 1.39877 * 126.03782 * 269.99449 * 12 11 10 14 14 N 1.30841 * 108.20025 * 180.02562 * 13 12 11 15 15 N 1.40084 * 108.20638 * 0.02562 * 14 13 12 16 16 H 0.97001 * 126.03035 * 179.97438 * 15 14 13 17 17 C 1.34943 * 107.92822 * 359.97438 * 15 14 13 18 18 C 1.46499 * 120.00192 * 140.89422 * 9 7 2 19 19 C 1.52999 * 117.49592 * 4.06011 * 18 9 7 20 20 C 1.53000 * 60.00121 * 252.51054 * 19 18 9 21 21 H 0.96998 * 120.00315 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.47456 * 149.99954 * 10 9 7 23 23 H 1.08999 * 109.46971 * 29.99717 * 10 9 7 24 24 H 1.08993 * 109.47423 * 59.99737 * 11 10 9 25 25 H 1.08999 * 109.47076 * 299.99456 * 11 10 9 26 26 H 1.08000 * 125.90066 * 0.02562 * 13 12 11 27 27 H 1.07995 * 126.13206 * 179.73070 * 17 15 14 28 28 H 1.08997 * 115.55496 * 149.77022 * 18 9 7 29 29 H 1.09001 * 117.50467 * 0.02562 * 19 18 9 30 30 H 1.09003 * 117.50073 * 145.02343 * 19 18 9 31 31 H 1.08998 * 117.50188 * 252.50972 * 20 19 18 32 32 H 1.09004 * 117.51611 * 107.48294 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4536 2.0719 -1.3992 5 1 1.4702 2.6395 0.7436 6 1 3.5690 1.4279 0.6555 7 6 2.0102 -1.2021 0.0005 8 1 1.5359 -2.0994 0.3697 9 7 3.2964 -1.2503 -0.4670 10 6 3.6767 -0.4697 -1.6470 11 6 3.4587 -1.3105 -2.9066 12 6 3.8504 -0.5078 -4.1203 13 6 3.0072 0.3249 -4.8635 14 7 3.7054 0.8482 -5.8385 15 7 5.0167 0.3639 -5.7468 16 1 5.7499 0.5858 -6.3419 17 6 5.0797 -0.4658 -4.6844 18 6 4.2922 -2.0825 0.2127 19 6 3.8121 -2.9468 1.3803 20 6 4.6665 -1.7061 1.6477 21 1 -0.4850 0.8400 -0.0004 22 1 4.7275 -0.1898 -1.5743 23 1 3.0638 0.4301 -1.7003 24 1 2.4078 -1.5904 -2.9792 25 1 4.0715 -2.2103 -2.8533 26 1 1.9607 0.5048 -4.6666 27 1 5.9534 -1.0039 -4.3477 28 1 5.0796 -2.4873 -0.4230 29 1 2.7553 -2.8967 1.6425 30 1 4.2836 -3.9206 1.5129 31 1 5.7001 -1.8636 1.9561 32 1 4.1721 -0.8390 2.0859 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589165867.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:22 Heat of formation + Delta-G solvation = 102.559091 kcal Electronic energy + Delta-G solvation = -14942.386562 eV Core-core repulsion = 12519.491838 eV Total energy + Delta-G solvation = -2422.894724 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.03070 -38.92433 -35.76345 -34.16289 -32.52179 -31.92412 -28.66372 -26.13069 -24.08725 -22.94818 -22.83615 -21.35896 -20.84207 -18.58223 -18.32978 -17.22171 -16.95417 -15.52802 -15.50035 -15.35360 -14.83813 -14.47505 -14.32604 -13.97123 -13.68327 -13.23463 -12.72643 -12.66774 -12.47893 -12.05376 -11.84494 -11.61640 -11.35423 -11.17549 -10.91139 -10.54790 -10.54155 -9.40098 -8.51249 -8.18461 -5.54355 1.00767 1.30860 1.39458 1.49928 1.84494 2.13863 2.42675 3.04211 3.28448 3.41571 3.93936 4.13685 4.35089 4.37909 4.45328 4.51634 4.65925 4.75466 4.84801 4.91670 4.99368 5.00344 5.10127 5.36806 5.43950 5.54800 5.59262 5.73199 5.99932 6.25810 6.52244 6.75777 7.06439 7.70039 8.10694 9.00942 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024989 B = 0.010120 C = 0.008220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.210432 B = 2766.241591 C = 3405.447248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.011 4.011 3 Si 0.930 3.070 4 H -0.275 1.275 5 H -0.313 1.313 6 H -0.263 1.263 7 C -0.248 4.248 8 H 0.047 0.953 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.041 4.041 12 C -0.249 4.249 13 C 0.036 3.964 14 N -0.331 5.331 15 N -0.469 5.469 16 H 0.453 0.547 17 C 0.078 3.922 18 C 0.108 3.892 19 C -0.188 4.188 20 C -0.219 4.219 21 H 0.261 0.739 22 H 0.063 0.937 23 H 0.028 0.972 24 H 0.042 0.958 25 H 0.081 0.919 26 H 0.173 0.827 27 H 0.219 0.781 28 H 0.133 0.867 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.754 -2.455 -7.521 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.208 4.208 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.242 1.242 6 H -0.187 1.187 7 C -0.378 4.378 8 H 0.065 0.935 9 N -0.308 5.308 10 C 0.018 3.982 11 C -0.082 4.082 12 C -0.261 4.261 13 C -0.150 4.150 14 N -0.154 5.154 15 N -0.179 5.179 16 H 0.300 0.700 17 C -0.071 4.071 18 C 0.001 3.999 19 C -0.226 4.226 20 C -0.259 4.259 21 H 0.070 0.930 22 H 0.082 0.918 23 H 0.046 0.954 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.190 0.810 27 H 0.236 0.764 28 H 0.150 0.850 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.574 -1.576 -8.547 16.969 hybrid contribution -0.283 0.679 0.807 1.092 sum 14.291 -0.897 -7.740 16.277 Atomic orbital electron populations 1.69982 1.07500 1.27196 1.54121 1.25987 0.95449 1.00494 0.98853 0.86086 0.79310 0.81187 0.77408 1.20174 1.24241 1.18729 1.18576 0.88184 0.92955 1.38040 0.93504 1.43869 1.06269 1.52824 1.27837 1.21267 0.98062 0.93275 0.85618 1.20193 1.00635 0.97304 0.90028 1.20365 0.94478 1.08116 1.03174 1.23982 1.00817 0.96619 0.93533 1.77201 0.90579 1.23728 1.23941 1.46267 1.09733 1.36702 1.25214 0.70019 1.22901 0.99834 0.95157 0.89175 1.21564 0.94237 0.96937 0.87210 1.23035 0.99428 0.95303 1.04876 1.23360 0.99915 0.98241 1.04411 0.92967 0.91844 0.95407 0.93925 0.90005 0.81023 0.76412 0.85007 0.91614 0.86826 0.87064 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.05 13.97 21.65 0.30 -58.75 16 2 C -0.01 -0.64 5.27 84.86 0.45 -0.19 16 3 Si 0.93 47.11 25.32 68.60 1.74 48.85 16 4 H -0.27 -13.45 6.52 99.48 0.65 -12.80 16 5 H -0.31 -16.25 7.11 99.48 0.71 -15.54 16 6 H -0.26 -12.87 7.11 99.48 0.71 -12.17 16 7 C -0.25 -13.74 8.93 84.03 0.75 -12.99 16 8 H 0.05 2.89 6.85 -2.91 -0.02 2.87 16 9 N -0.59 -26.57 2.38 -678.04 -1.61 -28.19 16 10 C 0.14 5.73 4.55 86.38 0.39 6.13 16 11 C -0.04 -1.42 6.02 29.85 0.18 -1.24 16 12 C -0.25 -7.65 5.35 -20.14 -0.11 -7.76 16 13 C 0.04 1.21 11.96 85.24 1.02 2.23 16 14 N -0.33 -10.32 12.70 -57.02 -0.72 -11.04 16 15 N -0.47 -10.37 7.36 -57.59 -0.42 -10.79 16 16 H 0.45 6.18 8.96 -213.33 -1.91 4.27 16 17 C 0.08 1.70 11.90 83.54 0.99 2.69 16 18 C 0.11 3.95 6.57 44.99 0.30 4.25 16 19 C -0.19 -6.78 9.80 30.59 0.30 -6.48 16 20 C -0.22 -7.76 10.34 30.60 0.32 -7.45 16 21 H 0.26 15.63 8.31 -92.71 -0.77 14.85 16 22 H 0.06 2.21 8.07 -2.39 -0.02 2.19 16 23 H 0.03 1.30 3.46 -2.39 -0.01 1.29 16 24 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.17 5.85 8.06 -2.91 -0.02 5.83 16 27 H 0.22 2.67 8.06 -2.91 -0.02 2.64 16 28 H 0.13 3.79 8.14 -2.39 -0.02 3.77 16 29 H 0.07 2.87 6.44 -2.39 -0.02 2.85 16 30 H 0.11 3.22 8.14 -2.39 -0.02 3.21 16 31 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 Total: -1.00 -70.96 270.23 3.02 -67.94 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -0.85 Total: 12.78 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 4.59 Total: -20.80 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -2.46 Total: -108.77 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.74 Total: 48.85 kcal Total: -70.96 3.02 -67.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589165867.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.503 kcal (2) G-P(sol) polarization free energy of solvation -70.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds