Wall clock time and date at job start Sun Mar 29 2020 22:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50706 * 119.99848 * 2 1 4 4 N 1.46900 * 109.47180 * 124.14291 * 3 2 1 5 5 C 1.46899 * 110.99620 * 300.00929 * 4 3 2 6 6 C 1.50696 * 109.47266 * 288.16597 * 5 4 3 7 7 H 1.08005 * 120.00377 * 354.74228 * 6 5 4 8 8 C 1.37880 * 120.00014 * 174.73945 * 6 5 4 9 9 N 1.31518 * 119.99989 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99986 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47031 * 90.00187 * 10 8 6 12 12 H 1.48504 * 109.47098 * 209.99940 * 10 8 6 13 13 H 1.48499 * 109.47514 * 330.00023 * 10 8 6 14 14 C 1.46893 * 111.00216 * 63.96330 * 4 3 2 15 15 C 1.50700 * 109.46970 * 66.04836 * 14 4 3 16 16 N 1.30501 * 125.64854 * 275.02188 * 15 14 4 17 17 C 1.34127 * 109.25710 * 179.97438 * 16 15 14 18 18 C 1.34672 * 108.02272 * 0.26683 * 17 16 15 19 19 N 1.35041 * 125.65373 * 95.00166 * 15 14 4 20 20 H 0.97001 * 126.39886 * 0.05287 * 19 15 14 21 21 H 1.08010 * 119.99598 * 180.02562 * 1 2 3 22 22 H 1.07999 * 120.00388 * 0.02562 * 1 2 3 23 23 H 1.07999 * 120.00388 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.46841 * 4.14040 * 3 2 1 25 25 H 1.09002 * 109.47197 * 244.14116 * 3 2 1 26 26 H 1.08993 * 109.47361 * 48.16891 * 5 4 3 27 27 H 1.09002 * 109.47058 * 168.16871 * 5 4 3 28 28 H 0.96998 * 119.99953 * 179.97438 * 9 8 6 29 29 H 1.08995 * 109.47673 * 306.04750 * 14 4 3 30 30 H 1.09002 * 109.47314 * 186.04611 * 14 4 3 31 31 H 1.08004 * 125.99342 * 179.97438 * 17 16 15 32 32 H 1.07993 * 126.59672 * 179.70356 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9815 1.3406 1.1463 5 6 2.2470 1.2205 2.4128 6 6 1.4920 2.4973 2.6787 7 1 1.6181 3.3459 2.0226 8 6 0.6401 2.5822 3.7595 9 7 0.4869 1.5490 4.5587 10 14 -0.2952 4.1651 4.0895 11 1 -1.5995 4.1265 3.3804 12 1 -0.5294 4.3066 5.5491 13 1 0.4995 5.3207 3.6014 14 6 4.0074 0.2956 1.0316 15 6 4.8963 0.5918 -0.1488 16 7 4.6539 0.2563 -1.3865 17 6 5.6592 0.6828 -2.1653 18 6 6.5615 1.3010 -1.3797 19 7 6.0752 1.2485 -0.1012 20 1 6.5004 1.6114 0.6916 21 1 -0.5400 -0.9354 0.0004 22 1 -0.5401 0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3574 2.1323 0.0742 25 1 2.6333 1.3958 -0.9248 26 1 1.5444 0.3898 2.3480 27 1 2.9507 1.0387 3.2251 28 1 -0.1121 1.6089 5.3193 29 1 3.5263 -0.6721 0.8903 30 1 4.6072 0.2738 1.9415 31 1 5.7344 0.5493 -3.2344 32 1 7.4894 1.7530 -1.6975 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590002905.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:33 Heat of formation + Delta-G solvation = 86.320907 kcal Electronic energy + Delta-G solvation = -14881.366046 eV Core-core repulsion = 12457.767182 eV Total energy + Delta-G solvation = -2423.598865 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.74184 -37.23853 -32.77768 -32.32765 -32.13299 -29.87837 -27.09539 -26.08308 -23.76960 -21.31398 -20.93923 -20.33675 -18.88703 -17.40412 -16.16222 -15.34625 -15.07895 -14.36790 -14.07799 -13.79096 -13.67434 -13.44720 -13.15833 -12.12245 -12.07680 -11.48460 -11.12956 -10.90680 -10.70012 -10.51428 -10.43100 -9.96350 -9.77039 -9.71392 -9.26969 -8.58030 -8.40314 -8.18039 -7.27433 -6.01072 -4.01870 2.29393 3.05887 3.32335 3.35354 3.38685 3.42788 3.43474 4.44108 4.76556 5.21738 5.25977 5.34556 5.49016 5.61492 5.70226 5.89580 5.97148 6.11422 6.34317 6.37004 6.58967 6.79866 6.99602 7.19974 7.32625 7.39928 7.53028 7.59972 7.82039 8.05233 8.18426 8.38826 8.52612 9.05824 9.61901 11.09451 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035357 B = 0.007456 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.730007 B = 3754.366921 C = 4110.073014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C 0.089 3.911 4 N -0.527 5.527 5 C 0.190 3.810 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.127 3.873 15 C 0.238 3.762 16 N -0.491 5.491 17 C -0.032 4.032 18 C -0.069 4.069 19 N -0.560 5.560 20 H 0.419 0.581 21 H 0.084 0.916 22 H 0.095 0.905 23 H 0.097 0.903 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.010 0.990 27 H 0.023 0.977 28 H 0.260 0.740 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.164 0.836 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.074 -1.722 -8.608 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.188 4.188 3 C -0.039 4.039 4 N -0.251 5.251 5 C 0.065 3.935 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.003 4.003 15 C -0.027 4.027 16 N -0.211 5.211 17 C -0.181 4.181 18 C -0.204 4.204 19 N -0.162 5.162 20 H 0.256 0.744 21 H 0.102 0.898 22 H 0.113 0.887 23 H 0.115 0.885 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.028 0.972 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.181 0.819 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.534 -1.742 -8.737 12.337 hybrid contribution 0.033 0.640 0.889 1.096 sum 8.567 -1.103 -7.848 11.671 Atomic orbital electron populations 1.23652 0.96054 1.00934 1.01768 1.23459 0.96455 0.99816 0.99046 1.21271 0.94520 0.94229 0.93839 1.62443 1.14415 1.43350 1.04867 1.19806 0.92308 0.97543 0.83808 1.21098 1.23876 0.98471 1.10639 0.92025 1.24954 0.96873 0.96483 0.96159 1.69955 1.37908 1.29789 1.16130 0.86544 0.80190 0.83728 0.77233 1.20721 1.21320 1.19873 1.20444 0.92866 0.95789 0.91194 1.23422 0.86929 0.96926 0.95407 1.70290 1.26373 1.24106 1.00365 1.22293 0.92545 1.03509 0.99732 1.22638 1.03064 1.10324 0.84352 1.43280 1.19005 1.44338 1.09613 0.74376 0.89787 0.88695 0.88480 0.90223 0.90763 0.97180 0.95945 0.92991 0.92136 0.90006 0.81863 0.81199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.53 14.32 29.02 0.42 -3.11 16 2 C -0.17 -3.30 7.42 -36.02 -0.27 -3.57 16 3 C 0.09 1.84 5.48 -4.97 -0.03 1.81 16 4 N -0.53 -11.24 4.65 -238.97 -1.11 -12.35 16 5 C 0.19 4.81 4.59 -4.98 -0.02 4.79 16 6 C -0.50 -13.92 8.52 -34.44 -0.29 -14.21 16 7 H 0.06 1.72 7.66 -52.48 -0.40 1.32 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 10 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.13 2.28 5.42 -4.98 -0.03 2.25 16 15 C 0.24 3.96 6.92 -155.42 -1.08 2.89 16 16 N -0.49 -8.52 10.10 -10.81 -0.11 -8.63 16 17 C -0.03 -0.46 11.87 -17.81 -0.21 -0.67 16 18 C -0.07 -0.84 12.04 -16.56 -0.20 -1.04 16 19 N -0.56 -7.51 6.15 -10.23 -0.06 -7.57 16 20 H 0.42 4.50 8.96 -40.82 -0.37 4.14 16 21 H 0.08 1.43 8.06 -52.48 -0.42 1.00 16 22 H 0.09 1.83 7.84 -52.49 -0.41 1.42 16 23 H 0.10 1.84 6.79 -52.49 -0.36 1.48 16 24 H 0.08 1.77 7.03 -51.93 -0.37 1.40 16 25 H 0.07 1.50 6.31 -51.93 -0.33 1.18 16 26 H 0.01 0.28 6.72 -51.93 -0.35 -0.07 16 27 H 0.02 0.59 7.81 -51.93 -0.41 0.19 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.06 1.10 6.33 -51.93 -0.33 0.77 16 30 H 0.08 1.35 7.86 -51.93 -0.41 0.94 16 31 H 0.16 1.86 8.06 -52.48 -0.42 1.44 16 32 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 272.89 15.07 4.11 4.11 Total: -1.00 -31.29 272.89 -7.38 -38.67 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.12 Total: 4.21 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -1.81 Total: -9.37 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.55 Total: -54.20 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.29 -7.38 -38.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590002905.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.994 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds