Wall clock time and date at job start Sun Mar 29 2020 22:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50706 * 119.99848 * 2 1 4 4 N 1.46900 * 109.47180 * 124.14291 * 3 2 1 5 5 C 1.46899 * 110.99620 * 300.00929 * 4 3 2 6 6 C 1.50696 * 109.47266 * 288.16597 * 5 4 3 7 7 H 1.08005 * 120.00377 * 354.74228 * 6 5 4 8 8 C 1.37880 * 120.00014 * 174.73945 * 6 5 4 9 9 N 1.31518 * 119.99989 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99986 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47031 * 90.00187 * 10 8 6 12 12 H 1.48504 * 109.47098 * 209.99940 * 10 8 6 13 13 H 1.48499 * 109.47514 * 330.00023 * 10 8 6 14 14 C 1.46893 * 111.00216 * 63.96330 * 4 3 2 15 15 C 1.50700 * 109.46970 * 66.04836 * 14 4 3 16 16 N 1.30501 * 125.64854 * 275.02188 * 15 14 4 17 17 C 1.34127 * 109.25710 * 179.97438 * 16 15 14 18 18 C 1.34672 * 108.02272 * 0.26683 * 17 16 15 19 19 N 1.35041 * 125.65373 * 95.00166 * 15 14 4 20 20 H 0.97001 * 126.39886 * 0.05287 * 19 15 14 21 21 H 1.08010 * 119.99598 * 180.02562 * 1 2 3 22 22 H 1.07999 * 120.00388 * 0.02562 * 1 2 3 23 23 H 1.07999 * 120.00388 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.46841 * 4.14040 * 3 2 1 25 25 H 1.09002 * 109.47197 * 244.14116 * 3 2 1 26 26 H 1.08993 * 109.47361 * 48.16891 * 5 4 3 27 27 H 1.09002 * 109.47058 * 168.16871 * 5 4 3 28 28 H 0.96998 * 119.99953 * 179.97438 * 9 8 6 29 29 H 1.08995 * 109.47673 * 306.04750 * 14 4 3 30 30 H 1.09002 * 109.47314 * 186.04611 * 14 4 3 31 31 H 1.08004 * 125.99342 * 179.97438 * 17 16 15 32 32 H 1.07993 * 126.59672 * 179.70356 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9815 1.3406 1.1463 5 6 2.2470 1.2205 2.4128 6 6 1.4920 2.4973 2.6787 7 1 1.6181 3.3459 2.0226 8 6 0.6401 2.5822 3.7595 9 7 0.4869 1.5490 4.5587 10 14 -0.2952 4.1651 4.0895 11 1 -1.5995 4.1265 3.3804 12 1 -0.5294 4.3066 5.5491 13 1 0.4995 5.3207 3.6014 14 6 4.0074 0.2956 1.0316 15 6 4.8963 0.5918 -0.1488 16 7 4.6539 0.2563 -1.3865 17 6 5.6592 0.6828 -2.1653 18 6 6.5615 1.3010 -1.3797 19 7 6.0752 1.2485 -0.1012 20 1 6.5004 1.6114 0.6916 21 1 -0.5400 -0.9354 0.0004 22 1 -0.5401 0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3574 2.1323 0.0742 25 1 2.6333 1.3958 -0.9248 26 1 1.5444 0.3898 2.3480 27 1 2.9507 1.0387 3.2251 28 1 -0.1121 1.6089 5.3193 29 1 3.5263 -0.6721 0.8903 30 1 4.6072 0.2738 1.9415 31 1 5.7344 0.5493 -3.2344 32 1 7.4894 1.7530 -1.6975 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590002905.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:33 Heat of formation + Delta-G solvation = 64.920255 kcal Electronic energy + Delta-G solvation = -14882.294048 eV Core-core repulsion = 12457.767182 eV Total energy + Delta-G solvation = -2424.526867 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.86261 -38.91521 -34.82829 -33.88699 -33.30586 -31.32661 -28.92382 -27.55800 -25.59879 -22.80397 -22.31246 -21.59005 -20.40260 -18.66321 -18.21568 -16.99015 -16.63141 -16.15736 -15.57953 -15.19231 -14.92080 -14.83648 -14.41282 -14.06427 -13.64855 -13.16550 -12.90301 -12.63776 -12.57255 -12.25793 -12.12968 -11.98666 -11.32319 -10.92638 -10.88683 -10.57063 -10.14023 -9.31899 -8.98433 -8.15630 -6.24274 1.19014 1.42190 1.42383 1.50106 1.53734 2.20839 2.37188 2.43808 3.17114 3.43050 3.73928 4.10291 4.11998 4.32631 4.49995 4.50491 4.61732 4.73014 4.86241 5.01499 5.11681 5.23746 5.29124 5.36720 5.67565 5.76272 5.92444 5.93015 6.09931 6.32510 6.54836 6.62838 6.90746 7.25909 7.44329 8.94368 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035357 B = 0.007456 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.730007 B = 3754.366921 C = 4110.073014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.178 4.178 3 C 0.099 3.901 4 N -0.530 5.530 5 C 0.207 3.793 6 C -0.516 4.516 7 H 0.055 0.945 8 C 0.008 3.992 9 N -0.931 5.931 10 Si 0.960 3.040 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.132 3.868 15 C 0.209 3.791 16 N -0.519 5.519 17 C -0.062 4.062 18 C -0.041 4.041 19 N -0.552 5.552 20 H 0.431 0.569 21 H 0.106 0.894 22 H 0.088 0.912 23 H 0.104 0.896 24 H 0.058 0.942 25 H 0.079 0.921 26 H -0.014 1.014 27 H 0.006 0.994 28 H 0.263 0.737 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.186 0.814 32 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.084 -0.880 -9.391 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.198 4.198 3 C -0.029 4.029 4 N -0.254 5.254 5 C 0.081 3.919 6 C -0.554 4.554 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.571 5.571 10 Si 0.785 3.215 11 H -0.201 1.201 12 H -0.207 1.207 13 H -0.192 1.192 14 C 0.003 3.997 15 C -0.056 4.056 16 N -0.240 5.240 17 C -0.210 4.210 18 C -0.176 4.176 19 N -0.155 5.155 20 H 0.271 0.729 21 H 0.124 0.876 22 H 0.107 0.893 23 H 0.121 0.879 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.004 0.996 27 H 0.024 0.976 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.203 0.797 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 9.561 -0.898 -9.523 13.524 hybrid contribution -0.190 0.358 1.051 1.126 sum 9.371 -0.540 -8.472 12.645 Atomic orbital electron populations 1.23821 0.95964 1.01709 1.00703 1.23448 0.96777 0.99561 0.99999 1.21110 0.94139 0.94023 0.93654 1.62314 1.14518 1.45150 1.03409 1.19434 0.91465 0.95752 0.85256 1.21364 1.24346 0.99097 1.10642 0.92654 1.25759 0.97726 0.99682 0.95887 1.70066 1.38664 1.31758 1.16642 0.85521 0.78867 0.79833 0.77232 1.20121 1.20723 1.19210 1.20339 0.92258 0.94394 0.92746 1.22914 0.88370 0.99532 0.94789 1.70190 1.28047 1.24740 1.01035 1.22818 0.92574 1.04563 1.01004 1.23348 1.03501 1.07687 0.83038 1.43293 1.18057 1.43356 1.10826 0.72934 0.87599 0.89346 0.87854 0.92360 0.90270 0.99590 0.97605 0.92809 0.92779 0.89012 0.79706 0.76712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.96 14.32 67.79 0.97 -5.99 16 2 C -0.18 -7.06 7.42 25.66 0.19 -6.87 16 3 C 0.10 4.12 5.48 85.56 0.47 4.59 16 4 N -0.53 -22.92 4.65 -909.97 -4.23 -27.15 16 5 C 0.21 10.71 4.59 85.56 0.39 11.10 16 6 C -0.52 -28.95 8.52 25.60 0.22 -28.73 16 7 H 0.06 3.11 7.66 -2.91 -0.02 3.09 16 8 C 0.01 0.43 5.46 84.65 0.46 0.89 16 9 N -0.93 -55.16 13.29 21.45 0.28 -54.88 16 10 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 14 C 0.13 4.77 5.42 85.56 0.46 5.23 16 15 C 0.21 6.75 6.92 138.13 0.96 7.71 16 16 N -0.52 -17.49 10.10 -188.13 -1.90 -19.39 16 17 C -0.06 -1.62 11.87 83.52 0.99 -0.63 16 18 C -0.04 -0.85 12.04 83.09 1.00 0.15 16 19 N -0.55 -13.56 6.15 -186.27 -1.15 -14.71 16 20 H 0.43 8.26 8.96 -92.71 -0.83 7.43 16 21 H 0.11 3.49 8.06 -2.91 -0.02 3.47 16 22 H 0.09 3.44 7.84 -2.91 -0.02 3.41 16 23 H 0.10 3.95 6.79 -2.91 -0.02 3.93 16 24 H 0.06 2.64 7.03 -2.39 -0.02 2.63 16 25 H 0.08 3.23 6.31 -2.39 -0.02 3.21 16 26 H -0.01 -0.77 6.72 -2.39 -0.02 -0.78 16 27 H 0.01 0.32 7.81 -2.39 -0.02 0.30 16 28 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.05 2.00 6.33 -2.39 -0.02 1.99 16 30 H 0.09 3.03 7.86 -2.39 -0.02 3.01 16 31 H 0.19 3.75 8.06 -2.91 -0.02 3.73 16 32 H 0.22 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -66.97 272.89 1.43 -65.54 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.28 Total: 16.88 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 6.11 Total: -12.55 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -6.99 Total: -116.13 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -66.97 1.43 -65.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590002905.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.456 kcal (2) G-P(sol) polarization free energy of solvation -66.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds