Wall clock time and date at job start Sun Mar 29 2020 22:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 119.99873 * 2 1 4 4 N 1.46899 * 109.47391 * 124.13693 * 3 2 1 5 5 C 1.46906 * 110.99999 * 300.00324 * 4 3 2 6 6 C 1.50703 * 109.46831 * 288.19056 * 5 4 3 7 7 H 1.08002 * 120.00253 * 354.75055 * 6 5 4 8 8 C 1.37874 * 119.99850 * 174.75231 * 6 5 4 9 9 N 1.31517 * 120.00115 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00160 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47652 * 89.99594 * 10 8 6 12 12 H 1.48507 * 109.47174 * 209.99921 * 10 8 6 13 13 H 1.48501 * 109.47132 * 329.99320 * 10 8 6 14 14 C 1.46902 * 111.00084 * 63.95555 * 4 3 2 15 15 C 1.50699 * 109.47225 * 66.04672 * 14 4 3 16 16 C 1.39868 * 125.89772 * 95.00013 * 15 14 4 17 17 C 1.35319 * 107.91829 * 179.76391 * 16 15 14 18 18 N 1.34943 * 107.74544 * 0.42048 * 17 16 15 19 19 H 0.97005 * 126.03560 * 179.84440 * 18 17 16 20 20 N 1.30840 * 125.90166 * 275.03073 * 15 14 4 21 21 H 1.08003 * 119.99568 * 180.02562 * 1 2 3 22 22 H 1.07995 * 120.00028 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.00028 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.47338 * 4.13309 * 3 2 1 25 25 H 1.09005 * 109.47053 * 244.13681 * 3 2 1 26 26 H 1.08999 * 109.46782 * 48.18553 * 5 4 3 27 27 H 1.09000 * 109.47013 * 168.19326 * 5 4 3 28 28 H 0.96999 * 120.00516 * 180.02562 * 9 8 6 29 29 H 1.08998 * 109.46905 * 306.04674 * 14 4 3 30 30 H 1.09001 * 109.47369 * 186.04809 * 14 4 3 31 31 H 1.07998 * 126.03918 * 0.02562 * 16 15 14 32 32 H 1.08006 * 126.12409 * 180.27042 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9814 1.3406 1.1463 5 6 2.2469 1.2208 2.4129 6 6 1.4915 2.4975 2.6782 7 1 1.6173 3.3458 2.0217 8 6 0.6398 2.5827 3.7591 9 7 0.4862 1.5496 4.5583 10 14 -0.2971 4.1649 4.0876 11 1 -1.6013 4.1244 3.3787 12 1 -0.5312 4.3077 5.5471 13 1 0.4965 5.3208 3.5982 14 6 4.0074 0.2955 1.0319 15 6 4.8963 0.5913 -0.1485 16 6 6.1181 1.2707 -0.1052 17 6 6.6078 1.3276 -1.3654 18 7 5.7226 0.7144 -2.1786 19 1 5.8100 0.6056 -3.1386 20 7 4.6582 0.2573 -1.3910 21 1 -0.5399 -0.9354 0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3575 2.1323 0.0741 25 1 2.6334 1.3956 -0.9248 26 1 1.5445 0.3898 2.3482 27 1 2.9506 1.0395 3.2253 28 1 -0.1133 1.6093 5.3185 29 1 3.5260 -0.6722 0.8907 30 1 4.6070 0.2737 1.9418 31 1 6.5895 1.6745 0.7786 32 1 7.5390 1.7844 -1.6666 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590050729.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:12 Heat of formation + Delta-G solvation = 103.694310 kcal Electronic energy + Delta-G solvation = -14824.457920 eV Core-core repulsion = 12401.612423 eV Total energy + Delta-G solvation = -2422.845497 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.87521 -37.20109 -32.72437 -32.59412 -30.99920 -29.69451 -27.39301 -26.25942 -23.80803 -21.25953 -20.87900 -19.73176 -18.40117 -17.83398 -16.12803 -15.15029 -14.89645 -14.29783 -14.09472 -13.80994 -13.40266 -13.25378 -12.84229 -12.08166 -11.87596 -11.37957 -11.07700 -10.86346 -10.65677 -10.52878 -10.44208 -10.25069 -9.91466 -9.23837 -9.12178 -8.56519 -8.46626 -8.33901 -7.15485 -5.94626 -3.94945 2.11637 3.00730 3.08847 3.12498 3.36421 3.42500 3.47274 4.49760 4.95122 5.04588 5.35062 5.40711 5.55873 5.68792 5.87255 5.99857 6.14413 6.19559 6.32534 6.36229 6.57155 6.79817 6.92707 7.28552 7.33449 7.45374 7.47795 7.54820 7.89686 7.95781 8.16346 8.27821 8.62054 9.12920 9.68413 11.15967 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035334 B = 0.007358 C = 0.006735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.252990 B = 3804.415450 C = 4156.661764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.171 4.171 3 C 0.090 3.910 4 N -0.523 5.523 5 C 0.190 3.810 6 C -0.500 4.500 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.125 3.875 15 C 0.101 3.899 16 C -0.253 4.253 17 C 0.044 3.956 18 N -0.487 5.487 19 H 0.433 0.567 20 N -0.293 5.293 21 H 0.083 0.917 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.008 0.992 27 H 0.025 0.975 28 H 0.260 0.740 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.146 0.854 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.184 -2.078 -10.880 14.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.191 4.191 3 C -0.038 4.038 4 N -0.246 5.246 5 C 0.065 3.935 6 C -0.539 4.539 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.005 4.005 15 C -0.066 4.066 16 C -0.283 4.283 17 C -0.103 4.103 18 N -0.195 5.195 19 H 0.276 0.724 20 N -0.118 5.118 21 H 0.102 0.898 22 H 0.114 0.886 23 H 0.114 0.886 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.164 0.836 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.556 -2.221 -11.463 14.476 hybrid contribution -0.276 0.376 0.352 0.584 sum 8.280 -1.845 -11.111 13.979 Atomic orbital electron populations 1.23656 0.96037 1.00945 1.01683 1.23504 0.96525 0.99878 0.99158 1.21257 0.94544 0.94143 0.93899 1.62394 1.13993 1.43808 1.04453 1.19800 0.92280 0.97306 0.84076 1.21124 1.23659 0.98551 1.10528 0.92019 1.24952 0.96953 0.96429 0.96198 1.69957 1.37975 1.29781 1.16186 0.86554 0.80128 0.83867 0.77203 1.20843 1.21348 1.19836 1.20486 0.93023 0.94551 0.92479 1.22439 0.95007 0.96087 0.93068 1.21466 0.98636 1.10492 0.97690 1.22481 0.96616 0.99654 0.91523 1.46329 1.16716 1.46628 1.09832 0.72389 1.77331 1.08110 1.23185 1.03147 0.89814 0.88637 0.88627 0.90180 0.91452 0.97423 0.95744 0.93065 0.94007 0.89451 0.83599 0.81206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.54 14.32 29.01 0.42 -3.12 16 2 C -0.17 -3.39 7.43 -36.03 -0.27 -3.66 16 3 C 0.09 1.88 5.48 -4.98 -0.03 1.85 16 4 N -0.52 -11.60 4.65 -238.96 -1.11 -12.71 16 5 C 0.19 4.96 4.59 -4.97 -0.02 4.94 16 6 C -0.50 -14.14 8.52 -34.44 -0.29 -14.44 16 7 H 0.06 1.75 7.66 -52.49 -0.40 1.35 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 10 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 14 C 0.12 2.37 5.36 -4.98 -0.03 2.34 16 15 C 0.10 1.75 5.98 -82.41 -0.49 1.26 16 16 C -0.25 -3.71 10.74 -40.01 -0.43 -4.14 16 17 C 0.04 0.51 11.99 -17.22 -0.21 0.30 16 18 N -0.49 -6.02 7.36 30.45 0.22 -5.79 16 19 H 0.43 3.72 8.96 -182.61 -1.64 2.08 16 20 N -0.29 -4.87 11.56 33.67 0.39 -4.48 16 21 H 0.08 1.43 8.06 -52.48 -0.42 1.01 16 22 H 0.10 1.85 7.84 -52.49 -0.41 1.44 16 23 H 0.10 1.83 6.79 -52.49 -0.36 1.48 16 24 H 0.08 1.80 7.03 -51.93 -0.37 1.43 16 25 H 0.07 1.36 6.32 -51.93 -0.33 1.03 16 26 H 0.01 0.22 6.72 -51.93 -0.35 -0.13 16 27 H 0.02 0.67 7.81 -51.93 -0.41 0.26 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.04 0.79 6.33 -51.93 -0.33 0.47 16 30 H 0.09 1.58 7.86 -51.93 -0.41 1.17 16 31 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.17 1.21 8.06 -52.48 -0.42 0.78 16 LS Contribution 273.39 15.07 4.12 4.12 Total: -1.00 -32.05 273.39 -7.51 -39.55 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.39 Total: 1.72 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -1.45 Total: -13.18 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.24 Total: -49.09 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.05 -7.51 -39.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590050729.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.246 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds