Wall clock time and date at job start Sun Mar 29 2020 22:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 119.99873 * 2 1 4 4 N 1.46899 * 109.47391 * 124.13693 * 3 2 1 5 5 C 1.46906 * 110.99999 * 300.00324 * 4 3 2 6 6 C 1.50703 * 109.46831 * 288.19056 * 5 4 3 7 7 H 1.08002 * 120.00253 * 354.75055 * 6 5 4 8 8 C 1.37874 * 119.99850 * 174.75231 * 6 5 4 9 9 N 1.31517 * 120.00115 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00160 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47652 * 89.99594 * 10 8 6 12 12 H 1.48507 * 109.47174 * 209.99921 * 10 8 6 13 13 H 1.48501 * 109.47132 * 329.99320 * 10 8 6 14 14 C 1.46902 * 111.00084 * 63.95555 * 4 3 2 15 15 C 1.50699 * 109.47225 * 66.04672 * 14 4 3 16 16 C 1.39868 * 125.89772 * 95.00013 * 15 14 4 17 17 C 1.35319 * 107.91829 * 179.76391 * 16 15 14 18 18 N 1.34943 * 107.74544 * 0.42048 * 17 16 15 19 19 H 0.97005 * 126.03560 * 179.84440 * 18 17 16 20 20 N 1.30840 * 125.90166 * 275.03073 * 15 14 4 21 21 H 1.08003 * 119.99568 * 180.02562 * 1 2 3 22 22 H 1.07995 * 120.00028 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.00028 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.47338 * 4.13309 * 3 2 1 25 25 H 1.09005 * 109.47053 * 244.13681 * 3 2 1 26 26 H 1.08999 * 109.46782 * 48.18553 * 5 4 3 27 27 H 1.09000 * 109.47013 * 168.19326 * 5 4 3 28 28 H 0.96999 * 120.00516 * 180.02562 * 9 8 6 29 29 H 1.08998 * 109.46905 * 306.04674 * 14 4 3 30 30 H 1.09001 * 109.47369 * 186.04809 * 14 4 3 31 31 H 1.07998 * 126.03918 * 0.02562 * 16 15 14 32 32 H 1.08006 * 126.12409 * 180.27042 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9814 1.3406 1.1463 5 6 2.2469 1.2208 2.4129 6 6 1.4915 2.4975 2.6782 7 1 1.6173 3.3458 2.0217 8 6 0.6398 2.5827 3.7591 9 7 0.4862 1.5496 4.5583 10 14 -0.2971 4.1649 4.0876 11 1 -1.6013 4.1244 3.3787 12 1 -0.5312 4.3077 5.5471 13 1 0.4965 5.3208 3.5982 14 6 4.0074 0.2955 1.0319 15 6 4.8963 0.5913 -0.1485 16 6 6.1181 1.2707 -0.1052 17 6 6.6078 1.3276 -1.3654 18 7 5.7226 0.7144 -2.1786 19 1 5.8100 0.6056 -3.1386 20 7 4.6582 0.2573 -1.3910 21 1 -0.5399 -0.9354 0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3575 2.1323 0.0741 25 1 2.6334 1.3956 -0.9248 26 1 1.5445 0.3898 2.3482 27 1 2.9506 1.0395 3.2253 28 1 -0.1133 1.6093 5.3185 29 1 3.5260 -0.6722 0.8907 30 1 4.6070 0.2737 1.9418 31 1 6.5895 1.6745 0.7786 32 1 7.5390 1.7844 -1.6666 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590050729.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:12 Heat of formation + Delta-G solvation = 81.040970 kcal Electronic energy + Delta-G solvation = -14825.440243 eV Core-core repulsion = 12401.612423 eV Total energy + Delta-G solvation = -2423.827820 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.98940 -38.90986 -34.82822 -34.08002 -32.47327 -30.76970 -29.30389 -27.86142 -25.71872 -22.79503 -22.24815 -21.14821 -19.85085 -18.89158 -18.29439 -16.93283 -16.49654 -16.11568 -15.59134 -15.19852 -14.90842 -14.35024 -14.29002 -13.99556 -13.54201 -13.05168 -12.78989 -12.61348 -12.56433 -12.26042 -12.15470 -11.97045 -11.53717 -11.26024 -10.57421 -10.36245 -10.12893 -9.53867 -8.95433 -8.13461 -6.22267 1.05300 1.42813 1.43740 1.45765 1.55423 1.89251 2.15265 2.45022 3.18898 3.54450 3.88696 4.01320 4.09271 4.31392 4.44153 4.55703 4.72128 4.84701 4.97615 5.00503 5.10637 5.20112 5.26072 5.37748 5.68602 5.73023 5.75102 5.90989 6.13163 6.37597 6.61063 6.64307 6.84588 6.92980 7.46212 8.96789 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035334 B = 0.007358 C = 0.006735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.252990 B = 3804.415450 C = 4156.661764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.182 4.182 3 C 0.098 3.902 4 N -0.529 5.529 5 C 0.207 3.793 6 C -0.515 4.515 7 H 0.056 0.944 8 C 0.006 3.994 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.128 3.872 15 C 0.079 3.921 16 C -0.285 4.285 17 C 0.076 3.924 18 N -0.472 5.472 19 H 0.451 0.549 20 N -0.326 5.326 21 H 0.106 0.894 22 H 0.089 0.911 23 H 0.102 0.898 24 H 0.059 0.941 25 H 0.077 0.923 26 H -0.016 1.016 27 H 0.003 0.997 28 H 0.263 0.737 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.061 -1.210 -12.221 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.201 4.201 3 C -0.030 4.030 4 N -0.252 5.252 5 C 0.081 3.919 6 C -0.554 4.554 7 H 0.074 0.926 8 C -0.192 4.192 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.200 1.200 12 H -0.207 1.207 13 H -0.191 1.191 14 C -0.002 4.002 15 C -0.087 4.087 16 C -0.315 4.315 17 C -0.072 4.072 18 N -0.182 5.182 19 H 0.297 0.703 20 N -0.151 5.151 21 H 0.124 0.876 22 H 0.108 0.892 23 H 0.120 0.880 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.002 0.998 27 H 0.021 0.979 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.106 0.894 31 H 0.169 0.831 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 9.438 -1.362 -12.838 15.992 hybrid contribution -0.462 0.075 0.677 0.823 sum 8.976 -1.288 -12.161 15.170 Atomic orbital electron populations 1.23831 0.95904 1.01779 1.00451 1.23474 0.96870 0.99545 1.00259 1.21115 0.94145 0.94034 0.93662 1.62277 1.14220 1.45485 1.03216 1.19428 0.91330 0.95695 0.85438 1.21380 1.24222 0.99094 1.10679 0.92581 1.25789 0.97783 0.99796 0.95832 1.70076 1.38689 1.31841 1.16682 0.85491 0.78800 0.79741 0.77245 1.20043 1.20699 1.19143 1.20396 0.92431 0.93341 0.94002 1.22155 0.95952 0.97912 0.92715 1.21701 0.98381 1.11737 0.99641 1.23166 0.97150 0.96955 0.89917 1.46365 1.15711 1.45418 1.10725 0.70253 1.77219 1.10194 1.24453 1.03261 0.87560 0.89225 0.88041 0.92229 0.90519 0.99782 0.97881 0.92829 0.94525 0.89427 0.83055 0.76012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.91 14.32 67.78 0.97 -5.94 16 2 C -0.18 -7.29 7.43 25.64 0.19 -7.09 16 3 C 0.10 4.18 5.48 85.56 0.47 4.65 16 4 N -0.53 -24.03 4.65 -909.92 -4.23 -28.26 16 5 C 0.21 11.16 4.59 85.56 0.39 11.56 16 6 C -0.52 -29.69 8.52 25.60 0.22 -29.47 16 7 H 0.06 3.23 7.66 -2.91 -0.02 3.21 16 8 C 0.01 0.34 5.46 84.65 0.46 0.80 16 9 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 10 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 14 C 0.13 4.98 5.36 85.56 0.46 5.44 16 15 C 0.08 2.67 5.98 43.10 0.26 2.93 16 16 C -0.29 -7.87 10.74 21.99 0.24 -7.64 16 17 C 0.08 1.47 11.99 83.54 1.00 2.47 16 18 N -0.47 -10.29 7.36 -57.59 -0.42 -10.72 16 19 H 0.45 6.23 8.96 -213.33 -1.91 4.32 16 20 N -0.33 -10.43 11.56 -47.38 -0.55 -10.98 16 21 H 0.11 3.52 8.06 -2.91 -0.02 3.50 16 22 H 0.09 3.49 7.84 -2.91 -0.02 3.47 16 23 H 0.10 3.93 6.79 -2.91 -0.02 3.91 16 24 H 0.06 2.74 7.03 -2.39 -0.02 2.72 16 25 H 0.08 3.10 6.32 -2.38 -0.02 3.09 16 26 H -0.02 -0.90 6.72 -2.39 -0.02 -0.92 16 27 H 0.00 0.18 7.81 -2.39 -0.02 0.16 16 28 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.04 1.44 6.33 -2.39 -0.02 1.42 16 30 H 0.09 3.30 7.86 -2.39 -0.02 3.28 16 31 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 32 H 0.22 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -69.51 273.39 0.97 -68.54 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -0.80 Total: 12.80 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 4.66 Total: -22.29 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -4.92 Total: -106.04 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -69.51 0.97 -68.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590050729.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.585 kcal (2) G-P(sol) polarization free energy of solvation -69.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds