Wall clock time and date at job start Sun Mar 29 2020 22:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00531 * 2 1 4 4 N 1.46900 * 109.47498 * 124.15947 * 3 2 1 5 5 C 1.46892 * 111.00020 * 300.56808 * 4 3 2 6 6 C 1.50701 * 109.46965 * 288.28078 * 5 4 3 7 7 H 1.07997 * 120.00073 * 354.78167 * 6 5 4 8 8 C 1.37878 * 120.00139 * 174.77641 * 6 5 4 9 9 N 1.31511 * 120.00268 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00126 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46848 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47385 * 119.99569 * 10 8 6 13 13 H 1.48497 * 109.47285 * 239.99876 * 10 8 6 14 14 C 1.46903 * 110.99575 * 64.51684 * 4 3 2 15 15 C 1.50700 * 109.47364 * 66.04788 * 14 4 3 16 16 C 1.39866 * 126.04024 * 269.99950 * 15 14 4 17 17 N 1.30837 * 108.20166 * 179.73927 * 16 15 14 18 18 N 1.40088 * 108.20544 * 0.40411 * 17 16 15 19 19 H 0.97003 * 126.03594 * 179.85245 * 18 17 16 20 20 C 1.34946 * 107.92263 * 359.59202 * 18 17 16 21 21 H 1.07997 * 120.00314 * 180.02562 * 1 2 3 22 22 H 1.08003 * 119.99354 * 0.02562 * 1 2 3 23 23 H 1.08005 * 119.99789 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.46987 * 4.16157 * 3 2 1 25 25 H 1.09002 * 109.47560 * 244.16484 * 3 2 1 26 26 H 1.08999 * 109.47458 * 48.28045 * 5 4 3 27 27 H 1.08998 * 109.47509 * 168.28501 * 5 4 3 28 28 H 0.96992 * 120.00312 * 179.97438 * 9 8 6 29 29 H 1.09004 * 109.47356 * 306.04502 * 14 4 3 30 30 H 1.09006 * 109.47151 * 186.04759 * 14 4 3 31 31 H 1.07997 * 125.90160 * 0.02562 * 16 15 14 32 32 H 1.08004 * 126.12186 * 180.21990 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9819 1.3402 1.1460 5 6 2.2491 1.2068 2.4121 6 6 1.4825 2.4752 2.6849 7 1 1.6000 3.3280 2.0328 8 6 0.6309 2.5469 3.7669 9 7 0.4873 1.5083 4.5606 10 14 -0.3199 4.1190 4.1045 11 1 0.0156 5.1319 3.0718 12 1 -1.7769 3.8346 4.0646 13 1 0.0460 4.6404 5.4459 14 6 4.0156 0.3035 1.0243 15 6 4.9015 0.6135 -0.1548 16 6 4.7026 0.1808 -1.4698 17 7 5.6737 0.6549 -2.2074 18 7 6.5277 1.3977 -1.3819 19 1 7.3323 1.8611 -1.6628 20 6 6.0301 1.3596 -0.1281 21 1 -0.5400 -0.9353 0.0004 22 1 -0.5399 0.9354 -0.0004 23 1 1.8500 -0.9354 -0.0004 24 1 1.3577 2.1322 0.0746 25 1 2.6331 1.3958 -0.9249 26 1 1.5542 0.3699 2.3433 27 1 2.9548 1.0273 3.2232 28 1 -0.1115 1.5589 5.3220 29 1 3.5414 -0.6669 0.8773 30 1 4.6160 0.2805 1.9338 31 1 3.8857 -0.4342 -1.8174 32 1 6.4566 1.8385 0.7409 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590051034.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:26 Heat of formation + Delta-G solvation = 101.411720 kcal Electronic energy + Delta-G solvation = -14840.767723 eV Core-core repulsion = 12417.823245 eV Total energy + Delta-G solvation = -2422.944478 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.92732 -37.19108 -32.75293 -32.46049 -31.19783 -30.16936 -27.01582 -25.81679 -23.60745 -21.72368 -20.83492 -19.96025 -18.75769 -17.28887 -16.11989 -15.17816 -14.83755 -14.37495 -14.14980 -13.96814 -13.56136 -13.18625 -12.67336 -12.11011 -12.01503 -11.33453 -11.13296 -10.92414 -10.67780 -10.54696 -10.40581 -10.30334 -9.87298 -9.42221 -9.18301 -8.64951 -8.36992 -8.22028 -7.11092 -5.96414 -3.96762 2.12618 2.95933 3.04522 3.11449 3.33423 3.41098 3.46120 4.48121 5.03354 5.17504 5.31319 5.39000 5.61689 5.69803 5.76726 5.90748 6.02368 6.19317 6.36466 6.47107 6.55422 6.78500 6.88037 7.24102 7.33132 7.43107 7.45677 7.52571 7.85231 7.89449 8.18026 8.29438 8.63901 9.12085 9.67001 11.14078 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035287 B = 0.007378 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.299052 B = 3793.949907 C = 4153.437029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.179 4.179 3 C 0.092 3.908 4 N -0.526 5.526 5 C 0.189 3.811 6 C -0.499 4.499 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.893 3.107 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.123 3.877 15 C -0.212 4.212 16 C 0.056 3.944 17 N -0.308 5.308 18 N -0.485 5.485 19 H 0.435 0.565 20 C 0.068 3.932 21 H 0.084 0.916 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.006 0.994 27 H 0.022 0.978 28 H 0.259 0.741 29 H 0.034 0.966 30 H 0.072 0.928 31 H 0.177 0.823 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.858 -2.255 -8.912 12.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.199 4.199 3 C -0.036 4.036 4 N -0.249 5.249 5 C 0.064 3.936 6 C -0.538 4.538 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.721 3.279 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.006 4.006 15 C -0.224 4.224 16 C -0.131 4.131 17 N -0.130 5.130 18 N -0.194 5.194 19 H 0.278 0.722 20 C -0.079 4.079 21 H 0.102 0.898 22 H 0.114 0.886 23 H 0.114 0.886 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.024 0.976 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.194 0.806 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 8.490 -1.784 -9.885 13.152 hybrid contribution -1.006 0.173 1.133 1.525 sum 7.485 -1.611 -8.751 11.628 Atomic orbital electron populations 1.23682 0.96097 1.01022 1.01065 1.23560 0.96648 0.99911 0.99776 1.21210 0.94455 0.94048 0.93932 1.62431 1.13551 1.44971 1.03904 1.19781 0.92315 0.97061 0.84478 1.21184 1.23323 0.98800 1.10486 0.92036 1.24959 0.97009 0.96320 0.96286 1.69962 1.38179 1.29484 1.16308 0.86524 0.79619 0.83679 0.78096 1.19734 1.21189 1.21140 1.20337 0.92719 0.93621 0.93918 1.20187 0.99140 1.06939 0.96135 1.23788 0.97454 0.99654 0.92172 1.77231 1.04625 1.13074 1.18108 1.46225 1.23622 1.43313 1.06225 0.72250 1.22382 0.96447 1.00027 0.89048 0.89791 0.88596 0.88608 0.90270 0.91924 0.97594 0.96005 0.93141 0.94835 0.91005 0.80600 0.80777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.23 14.32 29.02 0.42 -2.82 16 2 C -0.18 -3.25 7.41 -36.03 -0.27 -3.51 16 3 C 0.09 1.78 5.45 -4.98 -0.03 1.75 16 4 N -0.53 -11.03 4.65 -238.97 -1.11 -12.14 16 5 C 0.19 4.80 4.58 -4.98 -0.02 4.77 16 6 C -0.50 -13.88 8.53 -34.44 -0.29 -14.18 16 7 H 0.06 1.72 7.65 -52.49 -0.40 1.32 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 10 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.12 2.15 5.29 -4.97 -0.03 2.13 16 15 C -0.21 -3.26 4.96 -105.05 -0.52 -3.78 16 16 C 0.06 0.83 10.51 -17.37 -0.18 0.65 16 17 N -0.31 -4.56 12.70 30.62 0.39 -4.18 16 18 N -0.49 -5.95 7.36 30.45 0.22 -5.73 16 19 H 0.43 3.73 8.96 -182.60 -1.64 2.10 16 20 C 0.07 0.90 11.90 -17.22 -0.21 0.70 16 21 H 0.08 1.34 8.06 -52.49 -0.42 0.92 16 22 H 0.10 1.77 7.84 -52.48 -0.41 1.35 16 23 H 0.10 1.61 6.81 -52.48 -0.36 1.25 16 24 H 0.08 1.69 7.04 -51.93 -0.37 1.32 16 25 H 0.06 1.12 6.06 -51.93 -0.31 0.80 16 26 H 0.01 0.17 6.70 -51.93 -0.35 -0.18 16 27 H 0.02 0.59 7.81 -51.93 -0.41 0.19 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.03 0.58 6.36 -51.93 -0.33 0.25 16 30 H 0.07 1.24 7.86 -51.93 -0.41 0.83 16 31 H 0.18 2.29 8.06 -52.49 -0.42 1.87 16 32 H 0.18 1.88 8.06 -52.48 -0.42 1.45 16 LS Contribution 272.83 15.07 4.11 4.11 Total: -1.00 -31.38 272.83 -7.28 -38.66 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.38 Total: 1.34 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -1.23 Total: -12.83 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.24 Total: -47.91 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.38 -7.28 -38.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590051034.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.070 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds