Wall clock time and date at job start Sun Mar 29 2020 22:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00531 * 2 1 4 4 N 1.46900 * 109.47498 * 124.15947 * 3 2 1 5 5 C 1.46892 * 111.00020 * 300.56808 * 4 3 2 6 6 C 1.50701 * 109.46965 * 288.28078 * 5 4 3 7 7 H 1.07997 * 120.00073 * 354.78167 * 6 5 4 8 8 C 1.37878 * 120.00139 * 174.77641 * 6 5 4 9 9 N 1.31511 * 120.00268 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00126 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46848 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47385 * 119.99569 * 10 8 6 13 13 H 1.48497 * 109.47285 * 239.99876 * 10 8 6 14 14 C 1.46903 * 110.99575 * 64.51684 * 4 3 2 15 15 C 1.50700 * 109.47364 * 66.04788 * 14 4 3 16 16 C 1.39866 * 126.04024 * 269.99950 * 15 14 4 17 17 N 1.30837 * 108.20166 * 179.73927 * 16 15 14 18 18 N 1.40088 * 108.20544 * 0.40411 * 17 16 15 19 19 H 0.97003 * 126.03594 * 179.85245 * 18 17 16 20 20 C 1.34946 * 107.92263 * 359.59202 * 18 17 16 21 21 H 1.07997 * 120.00314 * 180.02562 * 1 2 3 22 22 H 1.08003 * 119.99354 * 0.02562 * 1 2 3 23 23 H 1.08005 * 119.99789 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.46987 * 4.16157 * 3 2 1 25 25 H 1.09002 * 109.47560 * 244.16484 * 3 2 1 26 26 H 1.08999 * 109.47458 * 48.28045 * 5 4 3 27 27 H 1.08998 * 109.47509 * 168.28501 * 5 4 3 28 28 H 0.96992 * 120.00312 * 179.97438 * 9 8 6 29 29 H 1.09004 * 109.47356 * 306.04502 * 14 4 3 30 30 H 1.09006 * 109.47151 * 186.04759 * 14 4 3 31 31 H 1.07997 * 125.90160 * 0.02562 * 16 15 14 32 32 H 1.08004 * 126.12186 * 180.21990 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9819 1.3402 1.1460 5 6 2.2491 1.2068 2.4121 6 6 1.4825 2.4752 2.6849 7 1 1.6000 3.3280 2.0328 8 6 0.6309 2.5469 3.7669 9 7 0.4873 1.5083 4.5606 10 14 -0.3199 4.1190 4.1045 11 1 0.0156 5.1319 3.0718 12 1 -1.7769 3.8346 4.0646 13 1 0.0460 4.6404 5.4459 14 6 4.0156 0.3035 1.0243 15 6 4.9015 0.6135 -0.1548 16 6 4.7026 0.1808 -1.4698 17 7 5.6737 0.6549 -2.2074 18 7 6.5277 1.3977 -1.3819 19 1 7.3323 1.8611 -1.6628 20 6 6.0301 1.3596 -0.1281 21 1 -0.5400 -0.9353 0.0004 22 1 -0.5399 0.9354 -0.0004 23 1 1.8500 -0.9354 -0.0004 24 1 1.3577 2.1322 0.0746 25 1 2.6331 1.3958 -0.9249 26 1 1.5542 0.3699 2.3433 27 1 2.9548 1.0273 3.2232 28 1 -0.1115 1.5589 5.3220 29 1 3.5414 -0.6669 0.8773 30 1 4.6160 0.2805 1.9338 31 1 3.8857 -0.4342 -1.8174 32 1 6.4566 1.8385 0.7409 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590051034.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:26 Heat of formation + Delta-G solvation = 79.642009 kcal Electronic energy + Delta-G solvation = -14841.711729 eV Core-core repulsion = 12417.823245 eV Total energy + Delta-G solvation = -2423.888483 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.02952 -38.79999 -34.79782 -33.91369 -32.38470 -31.53468 -28.90609 -27.26463 -25.37352 -22.96754 -22.44023 -21.19992 -20.15685 -18.50162 -18.15895 -16.89171 -16.33919 -16.09017 -15.40005 -15.27718 -15.01885 -14.70119 -14.02495 -13.85417 -13.59905 -13.02205 -12.68543 -12.61848 -12.52827 -12.17341 -12.09417 -11.99043 -11.47131 -11.17371 -10.55619 -10.48725 -10.10914 -9.40669 -8.79801 -8.11564 -6.20111 1.05727 1.42052 1.43409 1.52091 1.55999 1.87536 2.15980 2.45487 3.20536 3.68516 3.91412 4.15395 4.17513 4.34626 4.55307 4.63707 4.72144 4.81991 4.94487 5.04591 5.14916 5.31753 5.37316 5.46658 5.71346 5.75207 5.79798 5.98667 6.19657 6.49822 6.52976 6.77652 6.80357 6.97655 7.48876 8.98144 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035287 B = 0.007378 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.299052 B = 3793.949907 C = 4153.437029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.098 3.902 4 N -0.532 5.532 5 C 0.205 3.795 6 C -0.512 4.512 7 H 0.055 0.945 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.958 3.042 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.280 1.280 14 C 0.129 3.871 15 C -0.239 4.239 16 C 0.053 3.947 17 N -0.328 5.328 18 N -0.471 5.471 19 H 0.451 0.549 20 C 0.082 3.918 21 H 0.105 0.895 22 H 0.085 0.915 23 H 0.112 0.888 24 H 0.053 0.947 25 H 0.081 0.919 26 H -0.017 1.017 27 H -0.001 1.001 28 H 0.262 0.738 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.188 0.812 32 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.443 -1.687 -9.603 12.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.204 4.204 3 C -0.030 4.030 4 N -0.255 5.255 5 C 0.079 3.921 6 C -0.550 4.550 7 H 0.073 0.927 8 C -0.193 4.193 9 N -0.574 5.574 10 Si 0.784 3.216 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.205 1.205 14 C 0.001 3.999 15 C -0.250 4.250 16 C -0.133 4.133 17 N -0.151 5.151 18 N -0.181 5.181 19 H 0.298 0.702 20 C -0.067 4.067 21 H 0.123 0.877 22 H 0.103 0.897 23 H 0.130 0.870 24 H 0.072 0.928 25 H 0.099 0.901 26 H 0.001 0.999 27 H 0.017 0.983 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.205 0.795 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 9.107 -1.209 -10.615 14.039 hybrid contribution -1.110 -0.011 1.317 1.722 sum 7.998 -1.220 -9.298 12.325 Atomic orbital electron populations 1.23833 0.96239 1.01573 1.00610 1.23586 0.96814 0.99891 1.00126 1.21107 0.94094 0.93883 0.93945 1.62332 1.13809 1.46815 1.02514 1.19402 0.91337 0.95264 0.86070 1.21456 1.23704 0.99431 1.10427 0.92657 1.25766 0.97964 0.99471 0.96064 1.70075 1.38996 1.31487 1.16861 0.85496 0.78204 0.79830 0.78067 1.19094 1.20653 1.20532 1.20256 0.91946 0.92686 0.95038 1.20023 1.00146 1.09226 0.95637 1.23974 0.97816 0.99679 0.91870 1.77201 1.05159 1.13871 1.18848 1.46247 1.23720 1.42418 1.05668 0.70227 1.22742 0.95504 0.98490 0.89925 0.87724 0.89654 0.87031 0.92801 0.90102 0.99920 0.98304 0.92950 0.94643 0.91255 0.79514 0.78305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.51 14.32 67.78 0.97 -5.54 16 2 C -0.18 -6.58 7.41 25.65 0.19 -6.39 16 3 C 0.10 3.75 5.45 85.56 0.47 4.21 16 4 N -0.53 -22.24 4.65 -909.95 -4.23 -26.47 16 5 C 0.21 10.63 4.58 85.56 0.39 11.02 16 6 C -0.51 -28.74 8.53 25.60 0.22 -28.52 16 7 H 0.06 3.11 7.65 -2.91 -0.02 3.09 16 8 C 0.01 0.28 5.46 84.66 0.46 0.75 16 9 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 10 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 C 0.13 4.43 5.29 85.56 0.45 4.88 16 15 C -0.24 -6.92 4.96 -20.14 -0.10 -7.02 16 16 C 0.05 1.47 10.51 85.24 0.90 2.36 16 17 N -0.33 -9.04 12.70 -57.03 -0.72 -9.76 16 18 N -0.47 -10.31 7.36 -57.59 -0.42 -10.73 16 19 H 0.45 6.46 8.96 -213.32 -1.91 4.55 16 20 C 0.08 1.97 11.90 83.54 0.99 2.97 16 21 H 0.10 3.21 8.06 -2.91 -0.02 3.19 16 22 H 0.09 3.16 7.84 -2.91 -0.02 3.14 16 23 H 0.11 3.61 6.81 -2.91 -0.02 3.59 16 24 H 0.05 2.32 7.04 -2.39 -0.02 2.30 16 25 H 0.08 2.80 6.06 -2.39 -0.01 2.78 16 26 H -0.02 -0.95 6.70 -2.39 -0.02 -0.96 16 27 H 0.00 -0.06 7.81 -2.39 -0.02 -0.08 16 28 H 0.26 14.74 8.31 -92.71 -0.77 13.96 16 29 H 0.04 1.19 6.36 -2.39 -0.02 1.18 16 30 H 0.07 2.37 7.86 -2.38 -0.02 2.35 16 31 H 0.19 4.55 8.06 -2.91 -0.02 4.52 16 32 H 0.20 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -66.24 272.83 1.08 -65.17 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -0.80 Total: 12.07 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 4.94 Total: -21.27 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -5.09 Total: -102.39 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -66.24 1.08 -65.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590051034.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.808 kcal (2) G-P(sol) polarization free energy of solvation -66.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds