Wall clock time and date at job start Sun Mar 29 2020 22:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86808 * 119.99733 * 2 1 4 4 H 1.48494 * 109.46856 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47274 * 300.00309 * 3 2 1 6 6 H 1.48504 * 109.46714 * 60.00202 * 3 2 1 7 7 C 1.37873 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00104 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47102 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46871 * 174.49452 * 10 9 7 12 12 C 1.47045 * 110.99447 * 52.40693 * 11 10 9 13 13 C 1.53433 * 109.82418 * 52.94512 * 12 11 10 14 14 N 1.46529 * 108.17270 * 50.04167 * 13 12 11 15 15 C 1.34127 * 129.33990 * 163.42464 * 14 13 12 16 16 N 1.30874 * 108.51076 * 180.22145 * 15 14 13 17 17 C 1.34499 * 109.33535 * 359.92431 * 16 15 14 18 18 C 1.33656 * 107.79295 * 359.97438 * 17 16 15 19 19 C 1.47423 * 110.99952 * 176.71365 * 11 10 9 20 20 H 0.96993 * 120.00239 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47070 * 60.00046 * 9 7 2 22 22 H 1.09002 * 109.46612 * 300.00161 * 9 7 2 23 23 H 1.08997 * 109.47382 * 54.49304 * 10 9 7 24 24 H 1.09000 * 109.46926 * 294.49187 * 10 9 7 25 25 H 1.08999 * 109.46198 * 292.81589 * 12 11 10 26 26 H 1.09002 * 109.39293 * 173.03114 * 12 11 10 27 27 H 1.09001 * 109.72887 * 290.35723 * 13 12 11 28 28 H 1.09003 * 109.72489 * 169.72671 * 13 12 11 29 29 H 1.08002 * 125.74939 * 0.22025 * 15 14 13 30 30 H 1.08000 * 126.10277 * 179.97438 * 17 16 15 31 31 H 1.09004 * 109.77405 * 166.31488 * 19 11 10 32 32 H 1.09006 * 109.81613 * 45.55779 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 7 1.5159 -4.9301 0.1323 12 6 0.4505 -5.0331 -0.8760 13 6 1.0326 -4.7898 -2.2746 14 7 2.2126 -5.6439 -2.4334 15 6 2.8607 -5.9992 -3.5527 16 7 3.8593 -6.7790 -3.2249 17 6 3.8777 -6.9416 -1.8899 18 6 2.8606 -6.2410 -1.3791 19 6 2.4361 -6.0794 0.0577 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6249 -2.5570 0.8897 23 1 2.9353 -3.5503 0.8360 24 1 2.8054 -3.6612 -0.9357 25 1 -0.3184 -4.2887 -0.6693 26 1 0.0091 -6.0289 -0.8356 27 1 1.3194 -3.7432 -2.3769 28 1 0.2902 -5.0435 -3.0313 29 1 2.6019 -5.6934 -4.5557 30 1 4.5877 -7.5328 -1.3306 31 1 1.9270 -6.9820 0.3956 32 1 3.3104 -5.8939 0.6817 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590599763.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:59 Heat of formation + Delta-G solvation = 67.740949 kcal Electronic energy + Delta-G solvation = -15191.250841 eV Core-core repulsion = 12766.846289 eV Total energy + Delta-G solvation = -2424.404552 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.19989 -37.95830 -33.56399 -33.07042 -31.04988 -29.48424 -28.18475 -25.32723 -24.27035 -22.66874 -21.19801 -20.46345 -18.52701 -17.09451 -16.53637 -15.91974 -14.93357 -14.62276 -14.43144 -14.17271 -13.62566 -13.45389 -12.94774 -12.61788 -12.34167 -12.10559 -11.74403 -11.20760 -11.04842 -10.94321 -10.60263 -10.16290 -9.84942 -9.52055 -9.31505 -9.21167 -8.45525 -8.17965 -8.03755 -6.10869 -4.13439 2.24989 2.95905 3.24958 3.32140 3.33102 3.37365 4.21917 4.42109 4.74100 4.84786 4.97538 5.09703 5.18743 5.25939 5.44319 5.55755 5.75385 5.81527 5.91061 6.01674 6.23086 6.29643 6.51611 6.76904 6.88609 7.22395 7.30856 7.41339 7.56146 7.72151 7.91666 8.22230 8.30490 8.93068 9.51507 11.00385 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.040528 B = 0.007172 C = 0.006907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.715725 B = 3903.232478 C = 4052.687110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C 0.057 3.943 11 N -0.533 5.533 12 C 0.047 3.953 13 C 0.061 3.939 14 N -0.447 5.447 15 C 0.181 3.819 16 N -0.504 5.504 17 C -0.027 4.027 18 C -0.054 4.054 19 C 0.125 3.875 20 H 0.261 0.739 21 H 0.016 0.984 22 H 0.027 0.973 23 H 0.067 0.933 24 H 0.023 0.977 25 H 0.109 0.891 26 H 0.073 0.927 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.201 0.799 30 H 0.166 0.834 31 H 0.088 0.912 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.201 -10.740 -3.043 11.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.070 4.070 11 N -0.255 5.255 12 C -0.082 4.082 13 C -0.063 4.063 14 N -0.130 5.130 15 C -0.101 4.101 16 N -0.223 5.223 17 C -0.175 4.175 18 C -0.170 4.170 19 C -0.004 4.004 20 H 0.071 0.929 21 H 0.034 0.966 22 H 0.046 0.954 23 H 0.086 0.914 24 H 0.041 0.959 25 H 0.127 0.873 26 H 0.092 0.908 27 H 0.121 0.879 28 H 0.109 0.891 29 H 0.218 0.782 30 H 0.183 0.817 31 H 0.106 0.894 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.246 -10.866 -3.125 11.374 hybrid contribution 0.258 1.426 -0.447 1.516 sum 1.504 -9.440 -3.572 10.204 Atomic orbital electron populations 1.69958 1.06012 1.26663 1.50605 1.24975 0.94843 0.99241 0.95101 0.86539 0.80165 0.83681 0.77675 1.19726 1.20990 1.20850 1.21192 0.93078 0.90887 1.51019 0.92712 1.19199 0.93950 0.90437 0.97696 1.22460 0.97403 0.87921 0.99208 1.62528 1.12770 1.03066 1.47087 1.22520 0.95897 1.03140 0.86609 1.22866 0.85941 0.95921 1.01566 1.45442 1.23876 1.36791 1.06919 1.24695 0.92879 0.99961 0.92549 1.70510 1.19793 1.18142 1.13891 1.21719 1.00109 1.04875 0.90771 1.22122 0.98801 1.03225 0.92899 1.20986 0.96712 0.94939 0.87787 0.92942 0.96577 0.95421 0.91443 0.95885 0.87304 0.90849 0.87905 0.89121 0.78240 0.81654 0.89368 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.59 4.15 -27.88 -0.12 0.48 16 10 C 0.06 1.14 4.29 -3.82 -0.02 1.12 16 11 N -0.53 -8.98 5.07 -235.22 -1.19 -10.18 16 12 C 0.05 0.71 5.32 -3.52 -0.02 0.69 16 13 C 0.06 0.88 6.17 -3.80 -0.02 0.86 16 14 N -0.45 -6.88 2.87 -114.01 -0.33 -7.21 16 15 C 0.18 2.72 12.70 -90.89 -1.15 1.57 16 16 N -0.50 -8.48 11.28 -14.95 -0.17 -8.64 16 17 C -0.03 -0.42 11.85 -17.99 -0.21 -0.63 16 18 C -0.05 -0.84 5.93 -81.71 -0.48 -1.32 16 19 C 0.13 1.79 6.19 -4.70 -0.03 1.76 16 20 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 21 H 0.02 0.39 5.74 -51.93 -0.30 0.10 16 22 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 24 H 0.02 0.48 6.15 -51.93 -0.32 0.16 16 25 H 0.11 1.76 6.78 -51.93 -0.35 1.41 16 26 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 27 H 0.10 1.74 6.06 -51.93 -0.31 1.42 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.20 2.26 8.06 -52.49 -0.42 1.84 16 30 H 0.17 2.13 8.06 -52.49 -0.42 1.71 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.26 8.04 -51.93 -0.42 0.85 16 LS Contribution 260.10 15.07 3.92 3.92 Total: -1.00 -30.87 260.10 -8.72 -39.59 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.20 Total: -0.08 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -2.47 Total: -8.53 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.95 Total: -51.10 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.87 -8.72 -39.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590599763.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.329 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds