Wall clock time and date at job start Sun Mar 29 2020 22:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86808 * 119.99733 * 2 1 4 4 H 1.48494 * 109.46856 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47274 * 300.00309 * 3 2 1 6 6 H 1.48504 * 109.46714 * 60.00202 * 3 2 1 7 7 C 1.37873 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00104 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47102 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46871 * 174.49452 * 10 9 7 12 12 C 1.47045 * 110.99447 * 52.40693 * 11 10 9 13 13 C 1.53433 * 109.82418 * 52.94512 * 12 11 10 14 14 N 1.46529 * 108.17270 * 50.04167 * 13 12 11 15 15 C 1.34127 * 129.33990 * 163.42464 * 14 13 12 16 16 N 1.30874 * 108.51076 * 180.22145 * 15 14 13 17 17 C 1.34499 * 109.33535 * 359.92431 * 16 15 14 18 18 C 1.33656 * 107.79295 * 359.97438 * 17 16 15 19 19 C 1.47423 * 110.99952 * 176.71365 * 11 10 9 20 20 H 0.96993 * 120.00239 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47070 * 60.00046 * 9 7 2 22 22 H 1.09002 * 109.46612 * 300.00161 * 9 7 2 23 23 H 1.08997 * 109.47382 * 54.49304 * 10 9 7 24 24 H 1.09000 * 109.46926 * 294.49187 * 10 9 7 25 25 H 1.08999 * 109.46198 * 292.81589 * 12 11 10 26 26 H 1.09002 * 109.39293 * 173.03114 * 12 11 10 27 27 H 1.09001 * 109.72887 * 290.35723 * 13 12 11 28 28 H 1.09003 * 109.72489 * 169.72671 * 13 12 11 29 29 H 1.08002 * 125.74939 * 0.22025 * 15 14 13 30 30 H 1.08000 * 126.10277 * 179.97438 * 17 16 15 31 31 H 1.09004 * 109.77405 * 166.31488 * 19 11 10 32 32 H 1.09006 * 109.81613 * 45.55779 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 7 1.5159 -4.9301 0.1323 12 6 0.4505 -5.0331 -0.8760 13 6 1.0326 -4.7898 -2.2746 14 7 2.2126 -5.6439 -2.4334 15 6 2.8607 -5.9992 -3.5527 16 7 3.8593 -6.7790 -3.2249 17 6 3.8777 -6.9416 -1.8899 18 6 2.8606 -6.2410 -1.3791 19 6 2.4361 -6.0794 0.0577 20 1 -0.4850 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6249 -2.5570 0.8897 23 1 2.9353 -3.5503 0.8360 24 1 2.8054 -3.6612 -0.9357 25 1 -0.3184 -4.2887 -0.6693 26 1 0.0091 -6.0289 -0.8356 27 1 1.3194 -3.7432 -2.3769 28 1 0.2902 -5.0435 -3.0313 29 1 2.6019 -5.6934 -4.5557 30 1 4.5877 -7.5328 -1.3306 31 1 1.9270 -6.9820 0.3956 32 1 3.3104 -5.8939 0.6817 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590599763.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:59 Heat of formation + Delta-G solvation = 48.097803 kcal Electronic energy + Delta-G solvation = -15192.102632 eV Core-core repulsion = 12766.846289 eV Total energy + Delta-G solvation = -2425.256343 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.37270 -39.30380 -35.37892 -34.48258 -32.58623 -30.99002 -29.47472 -27.04060 -25.55080 -24.24447 -22.36880 -22.00713 -19.84028 -18.60264 -18.19970 -17.21922 -16.62915 -16.09556 -15.97362 -15.49493 -14.80038 -14.68174 -14.21383 -14.08935 -14.04327 -13.56057 -13.30957 -12.92183 -12.66750 -12.46611 -12.30177 -11.98549 -11.38528 -11.29556 -11.04215 -10.60523 -10.46304 -9.42269 -9.32868 -8.23379 -6.33179 1.09362 1.37332 1.39178 1.50921 1.80972 2.15053 2.37807 2.97184 3.10867 3.57263 3.76936 3.86198 3.95529 3.99745 4.31261 4.36624 4.46480 4.56017 4.71715 4.74879 4.77677 4.86916 5.00166 5.33244 5.44994 5.58108 5.73960 5.76236 5.97854 6.08838 6.24940 6.28141 6.82403 7.06150 7.35953 8.88156 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.040528 B = 0.007172 C = 0.006907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.715725 B = 3903.232478 C = 4052.687110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.051 0.949 9 C 0.036 3.964 10 C 0.079 3.921 11 N -0.541 5.541 12 C 0.048 3.952 13 C 0.067 3.933 14 N -0.453 5.453 15 C 0.180 3.820 16 N -0.534 5.534 17 C -0.036 4.036 18 C -0.066 4.066 19 C 0.129 3.871 20 H 0.264 0.736 21 H 0.008 0.992 22 H -0.001 1.001 23 H 0.060 0.940 24 H 0.013 0.987 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.123 0.877 29 H 0.231 0.769 30 H 0.186 0.814 31 H 0.114 0.886 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 -11.235 -3.381 11.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.070 0.930 9 C -0.002 4.002 10 C -0.048 4.048 11 N -0.262 5.262 12 C -0.081 4.081 13 C -0.056 4.056 14 N -0.137 5.137 15 C -0.102 4.102 16 N -0.253 5.253 17 C -0.184 4.184 18 C -0.183 4.183 19 C 0.000 4.000 20 H 0.073 0.927 21 H 0.027 0.973 22 H 0.017 0.983 23 H 0.079 0.921 24 H 0.031 0.969 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.092 0.908 28 H 0.141 0.859 29 H 0.247 0.753 30 H 0.203 0.797 31 H 0.132 0.868 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.649 -11.378 -3.457 12.005 hybrid contribution 0.117 1.535 -0.353 1.579 sum 1.766 -9.843 -3.810 10.701 Atomic orbital electron populations 1.70060 1.07421 1.27725 1.51322 1.25801 0.95699 1.02781 0.94649 0.85517 0.78975 0.79363 0.77924 1.19192 1.20280 1.20241 1.21595 0.93232 0.92542 1.50994 0.93041 1.18995 0.94049 0.91304 0.95810 1.22005 0.96078 0.88435 0.98309 1.62431 1.13230 1.02427 1.48124 1.22525 0.94983 1.04046 0.86537 1.22778 0.86380 0.94308 1.02167 1.45555 1.24114 1.36844 1.07148 1.25347 0.92160 0.99044 0.93641 1.70521 1.20839 1.19338 1.14631 1.22126 1.00466 1.05089 0.90669 1.22336 0.99056 1.03526 0.93356 1.21106 0.96796 0.94557 0.87504 0.92662 0.97327 0.98275 0.92125 0.96859 0.88977 0.88249 0.90782 0.85865 0.75300 0.79696 0.86785 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.98 13.29 21.45 0.28 -53.69 16 2 C 0.01 0.52 5.46 84.65 0.46 0.98 16 3 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.55 -30.18 9.11 25.60 0.23 -29.95 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.04 1.77 4.15 29.85 0.12 1.89 16 10 C 0.08 3.20 4.29 86.30 0.37 3.57 16 11 N -0.54 -17.68 5.07 -898.10 -4.55 -22.23 16 12 C 0.05 1.38 5.32 86.42 0.46 1.84 16 13 C 0.07 1.86 6.17 86.52 0.53 2.39 16 14 N -0.45 -13.18 2.87 -514.63 -1.48 -14.65 16 15 C 0.18 5.07 12.70 180.44 2.29 7.36 16 16 N -0.53 -17.09 11.28 -201.21 -2.27 -19.36 16 17 C -0.04 -1.07 11.85 83.24 0.99 -0.08 16 18 C -0.07 -1.94 5.93 40.64 0.24 -1.70 16 19 C 0.13 3.42 6.19 85.45 0.53 3.95 16 20 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 21 H 0.01 0.43 5.74 -2.39 -0.01 0.42 16 22 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 23 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.01 0.56 6.15 -2.39 -0.01 0.54 16 25 H 0.09 2.98 6.78 -2.39 -0.02 2.97 16 26 H 0.10 2.38 8.07 -2.39 -0.02 2.36 16 27 H 0.07 2.50 6.06 -2.39 -0.01 2.49 16 28 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.23 4.64 8.06 -2.91 -0.02 4.61 16 30 H 0.19 4.40 8.06 -2.91 -0.02 4.38 16 31 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.10 2.53 8.04 -2.38 -0.02 2.51 16 Total: -1.00 -65.55 260.10 1.35 -64.20 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 1.11 Total: 10.02 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 6.23 Total: -9.74 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -8.01 Total: -109.94 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -65.55 1.35 -64.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590599763.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.295 kcal (2) G-P(sol) polarization free energy of solvation -65.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds