Wall clock time and date at job start Sun Mar 29 2020 22:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99960 * 2 1 4 4 H 1.48496 * 109.47207 * 270.00236 * 3 2 1 5 5 H 1.48498 * 109.46857 * 30.00220 * 3 2 1 6 6 H 1.48500 * 109.46910 * 149.99929 * 3 2 1 7 7 C 1.37875 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99628 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00042 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47194 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47163 * 179.97438 * 10 9 7 12 12 C 1.46960 * 110.99729 * 189.99541 * 11 10 9 13 13 C 1.53504 * 109.66162 * 164.43776 * 12 11 10 14 14 C 1.50915 * 107.86386 * 49.23560 * 13 12 11 15 15 N 1.33293 * 128.91820 * 163.97391 * 14 13 12 16 16 C 1.30845 * 109.09911 * 180.23290 * 15 14 13 17 17 N 1.35380 * 108.78586 * 359.97438 * 16 15 14 18 18 H 0.97001 * 126.49965 * 179.97438 * 17 16 15 19 19 C 1.35255 * 123.02440 * 344.15507 * 14 13 12 20 20 C 1.47247 * 111.01701 * 65.39666 * 11 10 9 21 21 H 0.97009 * 119.99952 * 359.97438 * 1 2 3 22 22 H 1.08990 * 109.47451 * 59.99453 * 9 7 2 23 23 H 1.09000 * 109.46921 * 299.99338 * 9 7 2 24 24 H 1.08998 * 109.47170 * 59.99099 * 10 9 7 25 25 H 1.09001 * 109.46661 * 300.00088 * 10 9 7 26 26 H 1.09001 * 109.43452 * 44.37697 * 12 11 10 27 27 H 1.08998 * 109.40377 * 284.47871 * 12 11 10 28 28 H 1.09002 * 109.78613 * 289.64272 * 13 12 11 29 29 H 1.09007 * 109.77949 * 168.82368 * 13 12 11 30 30 H 1.07995 * 125.60433 * 179.97438 * 16 15 14 31 31 H 1.08999 * 109.50295 * 55.56639 * 20 11 10 32 32 H 1.08990 * 109.86481 * 294.97724 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 7 5.4905 -2.6365 -0.0001 12 6 6.0171 -3.9876 -0.2384 13 6 7.5023 -3.9037 -0.6174 14 6 8.1900 -3.0234 0.3972 15 7 9.4928 -2.8946 0.6479 16 6 9.6594 -2.0264 1.6125 17 7 8.4458 -1.5732 2.0056 18 1 8.2712 -0.9226 2.7036 19 6 7.5184 -2.2027 1.2368 20 6 6.0187 -2.0643 1.2496 21 1 -0.4850 0.8401 0.0004 22 1 3.8745 -0.6807 0.8904 23 1 3.8751 -0.6797 -0.8895 24 1 3.6585 -3.1502 -0.8902 25 1 3.6578 -3.1505 0.8897 26 1 5.4612 -4.4555 -1.0508 27 1 5.9070 -4.5841 0.6672 28 1 7.6053 -3.4701 -1.6122 29 1 7.9440 -4.9001 -0.6011 30 1 10.6090 -1.7214 2.0269 31 1 5.6069 -2.6067 2.1007 32 1 5.7474 -1.0109 1.3183 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590601120.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:03 Heat of formation + Delta-G solvation = 57.831321 kcal Electronic energy + Delta-G solvation = -14804.688299 eV Core-core repulsion = 12379.854033 eV Total energy + Delta-G solvation = -2424.834266 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.16806 -37.76793 -33.72709 -32.94869 -31.60025 -29.63642 -29.14817 -25.26166 -23.75993 -22.25392 -21.50753 -20.13547 -18.79835 -17.89631 -16.78178 -15.63873 -15.03356 -14.75350 -14.46568 -13.92553 -13.69207 -13.36568 -13.04311 -12.67175 -12.44988 -11.87403 -11.65125 -11.42119 -11.02604 -10.98371 -10.20974 -9.95697 -9.86050 -9.79843 -9.64953 -9.23845 -8.56202 -8.11368 -7.86653 -6.07349 -4.05670 2.07364 3.07405 3.17593 3.29531 3.36642 3.39613 4.25908 4.42780 4.51311 4.90177 5.11932 5.25462 5.27257 5.52028 5.54746 5.62610 5.73079 5.93704 6.00748 6.15322 6.17442 6.25332 6.34513 6.70357 6.80329 7.10673 7.22860 7.39537 7.50354 7.55836 7.80473 8.12694 8.49645 8.96882 9.55066 11.05996 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041545 B = 0.006862 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.807156 B = 4079.447951 C = 4554.406151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.009 4.009 10 C 0.072 3.928 11 N -0.538 5.538 12 C 0.055 3.945 13 C -0.027 4.027 14 C 0.009 3.991 15 N -0.487 5.487 16 C 0.166 3.834 17 N -0.558 5.558 18 H 0.419 0.581 19 C -0.021 4.021 20 C 0.133 3.867 21 H 0.263 0.737 22 H 0.013 0.987 23 H 0.022 0.978 24 H 0.074 0.926 25 H 0.029 0.971 26 H 0.083 0.917 27 H 0.033 0.967 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.206 0.794 31 H 0.048 0.952 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.167 -4.015 4.099 17.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.046 4.046 10 C -0.054 4.054 11 N -0.263 5.263 12 C -0.073 4.073 13 C -0.066 4.066 14 C -0.121 4.121 15 N -0.206 5.206 16 C -0.116 4.116 17 N -0.161 5.161 18 H 0.257 0.743 19 C -0.138 4.138 20 C 0.004 3.996 21 H 0.073 0.927 22 H 0.031 0.969 23 H 0.040 0.960 24 H 0.092 0.908 25 H 0.047 0.953 26 H 0.102 0.898 27 H 0.051 0.949 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.223 0.777 31 H 0.066 0.934 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 16.798 -4.064 3.273 17.590 hybrid contribution -0.502 1.333 1.537 2.095 sum 16.297 -2.732 4.811 17.210 Atomic orbital electron populations 1.69913 1.06300 1.26920 1.51063 1.24988 0.94695 0.99125 0.94496 0.86757 0.80136 0.83574 0.78639 1.20176 1.21502 1.19204 1.21075 0.89349 0.94548 1.51052 0.91011 1.19586 0.96551 0.91728 0.96767 1.22182 0.82395 1.00506 1.00304 1.61957 1.10064 1.21145 1.33124 1.22167 0.94833 0.89854 1.00494 1.20030 0.92712 0.97414 0.96455 1.20488 0.88868 1.02003 1.00777 1.69851 1.18357 1.17670 1.14718 1.24984 0.89561 0.98828 0.98237 1.42793 1.07254 1.35182 1.30823 0.74327 1.21098 0.93385 1.00873 0.98453 1.20429 0.85582 1.01653 0.91911 0.92701 0.96875 0.95987 0.90792 0.95258 0.89839 0.94858 0.90045 0.90553 0.77717 0.93418 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.20 3.95 -27.88 -0.11 -0.31 16 10 C 0.07 1.42 4.90 -3.82 -0.02 1.40 16 11 N -0.54 -9.26 4.62 -235.45 -1.09 -10.35 16 12 C 0.06 0.79 5.52 -3.53 -0.02 0.78 16 13 C -0.03 -0.38 6.52 -27.52 -0.18 -0.56 16 14 C 0.01 0.14 7.07 -82.92 -0.59 -0.45 16 15 N -0.49 -7.46 11.24 -10.70 -0.12 -7.58 16 16 C 0.17 1.93 13.05 -89.78 -1.17 0.76 16 17 N -0.56 -6.42 6.14 -10.25 -0.06 -6.49 16 18 H 0.42 3.36 8.96 -40.82 -0.37 2.99 16 19 C -0.02 -0.31 7.18 -81.88 -0.59 -0.90 16 20 C 0.13 2.12 5.43 -4.83 -0.03 2.09 16 21 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 22 H 0.01 0.30 5.71 -51.93 -0.30 0.01 16 23 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 24 H 0.07 1.43 7.86 -51.93 -0.41 1.02 16 25 H 0.03 0.57 8.10 -51.93 -0.42 0.15 16 26 H 0.08 1.10 7.81 -51.93 -0.41 0.69 16 27 H 0.03 0.47 8.07 -51.93 -0.42 0.05 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.21 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.09 1.52 6.73 -51.93 -0.35 1.17 16 LS Contribution 262.51 15.07 3.96 3.96 Total: -1.00 -33.07 262.51 -8.68 -41.75 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.33 Total: -1.13 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -3.13 Total: -10.29 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.50 Total: -51.27 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.07 -8.68 -41.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590601120.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.576 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds