Wall clock time and date at job start Sun Mar 29 2020 22:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99960 * 2 1 4 4 H 1.48496 * 109.47207 * 270.00236 * 3 2 1 5 5 H 1.48498 * 109.46857 * 30.00220 * 3 2 1 6 6 H 1.48500 * 109.46910 * 149.99929 * 3 2 1 7 7 C 1.37875 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99628 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00042 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47194 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47163 * 179.97438 * 10 9 7 12 12 C 1.46960 * 110.99729 * 189.99541 * 11 10 9 13 13 C 1.53504 * 109.66162 * 164.43776 * 12 11 10 14 14 C 1.50915 * 107.86386 * 49.23560 * 13 12 11 15 15 N 1.33293 * 128.91820 * 163.97391 * 14 13 12 16 16 C 1.30845 * 109.09911 * 180.23290 * 15 14 13 17 17 N 1.35380 * 108.78586 * 359.97438 * 16 15 14 18 18 H 0.97001 * 126.49965 * 179.97438 * 17 16 15 19 19 C 1.35255 * 123.02440 * 344.15507 * 14 13 12 20 20 C 1.47247 * 111.01701 * 65.39666 * 11 10 9 21 21 H 0.97009 * 119.99952 * 359.97438 * 1 2 3 22 22 H 1.08990 * 109.47451 * 59.99453 * 9 7 2 23 23 H 1.09000 * 109.46921 * 299.99338 * 9 7 2 24 24 H 1.08998 * 109.47170 * 59.99099 * 10 9 7 25 25 H 1.09001 * 109.46661 * 300.00088 * 10 9 7 26 26 H 1.09001 * 109.43452 * 44.37697 * 12 11 10 27 27 H 1.08998 * 109.40377 * 284.47871 * 12 11 10 28 28 H 1.09002 * 109.78613 * 289.64272 * 13 12 11 29 29 H 1.09007 * 109.77949 * 168.82368 * 13 12 11 30 30 H 1.07995 * 125.60433 * 179.97438 * 16 15 14 31 31 H 1.08999 * 109.50295 * 55.56639 * 20 11 10 32 32 H 1.08990 * 109.86481 * 294.97724 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 7 5.4905 -2.6365 -0.0001 12 6 6.0171 -3.9876 -0.2384 13 6 7.5023 -3.9037 -0.6174 14 6 8.1900 -3.0234 0.3972 15 7 9.4928 -2.8946 0.6479 16 6 9.6594 -2.0264 1.6125 17 7 8.4458 -1.5732 2.0056 18 1 8.2712 -0.9226 2.7036 19 6 7.5184 -2.2027 1.2368 20 6 6.0187 -2.0643 1.2496 21 1 -0.4850 0.8401 0.0004 22 1 3.8745 -0.6807 0.8904 23 1 3.8751 -0.6797 -0.8895 24 1 3.6585 -3.1502 -0.8902 25 1 3.6578 -3.1505 0.8897 26 1 5.4612 -4.4555 -1.0508 27 1 5.9070 -4.5841 0.6672 28 1 7.6053 -3.4701 -1.6122 29 1 7.9440 -4.9001 -0.6011 30 1 10.6090 -1.7214 2.0269 31 1 5.6069 -2.6067 2.1007 32 1 5.7474 -1.0109 1.3183 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590601120.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:02 Heat of formation + Delta-G solvation = 34.755339 kcal Electronic energy + Delta-G solvation = -14805.688949 eV Core-core repulsion = 12379.854033 eV Total energy + Delta-G solvation = -2425.834915 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.17350 -39.07712 -35.44779 -34.30672 -33.18253 -30.82141 -30.68327 -26.80736 -25.15110 -23.56168 -22.50337 -21.86595 -19.91277 -19.11347 -18.67657 -16.78501 -16.46016 -16.21248 -15.82286 -15.43267 -14.93351 -14.80429 -14.52003 -14.17527 -13.88730 -13.30352 -13.00812 -12.92435 -12.79718 -12.19380 -11.96852 -11.73195 -11.53263 -11.37278 -10.91604 -10.83779 -10.74401 -9.33066 -9.05468 -8.29219 -6.33050 1.06522 1.36434 1.37411 1.48966 2.14338 2.15456 2.36099 2.98547 3.06671 3.57353 3.85159 4.09066 4.18188 4.34482 4.38144 4.47236 4.56873 4.60406 4.69210 4.87840 4.94575 5.00440 5.12466 5.20022 5.32300 5.47382 5.63398 5.74742 6.08579 6.17072 6.30400 6.58422 6.74984 7.12977 7.31715 8.87413 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041545 B = 0.006862 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.807156 B = 4079.447951 C = 4554.406151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.008 3.992 3 Si 0.949 3.051 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.531 4.531 8 H 0.036 0.964 9 C -0.002 4.002 10 C 0.085 3.915 11 N -0.547 5.547 12 C 0.058 3.942 13 C -0.024 4.024 14 C -0.012 4.012 15 N -0.526 5.526 16 C 0.187 3.813 17 N -0.547 5.547 18 H 0.436 0.564 19 C -0.041 4.041 20 C 0.136 3.864 21 H 0.266 0.734 22 H 0.020 0.980 23 H 0.019 0.981 24 H 0.072 0.928 25 H 0.026 0.974 26 H 0.094 0.906 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.252 0.748 31 H 0.051 0.949 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.682 -3.224 4.750 19.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.569 4.569 8 H 0.054 0.946 9 C -0.039 4.039 10 C -0.042 4.042 11 N -0.272 5.272 12 C -0.070 4.070 13 C -0.063 4.063 14 C -0.142 4.142 15 N -0.246 5.246 16 C -0.096 4.096 17 N -0.151 5.151 18 H 0.276 0.724 19 C -0.158 4.158 20 C 0.007 3.993 21 H 0.075 0.925 22 H 0.038 0.962 23 H 0.037 0.963 24 H 0.090 0.910 25 H 0.044 0.956 26 H 0.112 0.888 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.268 0.732 31 H 0.069 0.931 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 19.325 -3.279 3.941 19.993 hybrid contribution -1.251 1.019 1.359 2.110 sum 18.073 -2.260 5.301 18.969 Atomic orbital electron populations 1.70060 1.08242 1.28142 1.52658 1.25933 0.95526 1.03317 0.94132 0.85670 0.79436 0.78481 0.79091 1.19549 1.20966 1.17085 1.21413 0.91851 0.93280 1.50377 0.94602 1.19457 0.93418 0.94389 0.96675 1.21868 0.84325 0.97853 1.00148 1.61857 1.08175 1.23022 1.34137 1.22214 0.95291 0.88426 1.01098 1.20019 0.92136 0.98137 0.95986 1.20785 0.89487 1.02588 1.01347 1.69858 1.18192 1.19768 1.16777 1.25909 0.90830 0.96526 0.96289 1.42774 1.06614 1.35041 1.30698 0.72361 1.20906 0.93063 1.02095 0.99774 1.20328 0.86639 1.00946 0.91364 0.92478 0.96188 0.96306 0.90976 0.95568 0.88804 0.94390 0.90472 0.89059 0.73215 0.93149 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.30 13.96 21.45 0.30 -59.01 16 2 C 0.01 0.46 5.47 84.65 0.46 0.92 16 3 Si 0.95 44.19 27.47 68.60 1.88 46.07 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.25 -10.61 6.54 99.48 0.65 -9.96 16 7 C -0.53 -30.27 9.66 25.60 0.25 -30.02 16 8 H 0.04 2.23 7.99 -2.91 -0.02 2.21 16 9 C 0.00 -0.08 3.95 29.85 0.12 0.04 16 10 C 0.09 3.30 4.90 86.30 0.42 3.73 16 11 N -0.55 -18.20 4.62 -898.83 -4.16 -22.35 16 12 C 0.06 1.59 5.52 86.46 0.48 2.07 16 13 C -0.02 -0.64 6.52 30.09 0.20 -0.45 16 14 C -0.01 -0.36 7.07 41.72 0.30 -0.07 16 15 N -0.53 -14.89 11.24 -187.76 -2.11 -17.00 16 16 C 0.19 3.71 13.05 180.05 2.35 6.06 16 17 N -0.55 -10.99 6.14 -186.35 -1.14 -12.13 16 18 H 0.44 5.58 8.96 -92.71 -0.83 4.75 16 19 C -0.04 -1.13 7.18 41.21 0.30 -0.84 16 20 C 0.14 4.14 5.43 85.47 0.46 4.60 16 21 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 22 H 0.02 0.90 5.71 -2.39 -0.01 0.89 16 23 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 24 H 0.07 2.79 7.86 -2.39 -0.02 2.77 16 25 H 0.03 1.02 8.10 -2.39 -0.02 1.00 16 26 H 0.09 2.35 7.81 -2.39 -0.02 2.33 16 27 H 0.04 1.01 8.07 -2.39 -0.02 0.99 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.25 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 32 H 0.08 2.60 6.73 -2.39 -0.02 2.58 16 Total: -1.00 -71.45 262.51 0.34 -71.11 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.23 Total: 7.25 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 5.33 Total: -13.95 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -7.11 Total: -110.48 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Total: -71.45 0.34 -71.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590601120.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.868 kcal (2) G-P(sol) polarization free energy of solvation -71.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds