Wall clock time and date at job start Sun Mar 29 2020 22:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46711 * 2 1 4 4 C 1.50700 * 109.47213 * 239.99970 * 2 1 3 5 5 H 1.08002 * 119.99660 * 240.00302 * 4 2 1 6 6 C 1.37876 * 120.00183 * 59.99600 * 4 2 1 7 7 N 1.31516 * 119.99595 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99980 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47175 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47279 * 120.00452 * 8 6 4 11 11 H 1.48500 * 109.46891 * 240.00289 * 8 6 4 12 12 C 1.53004 * 109.47050 * 119.99772 * 2 1 3 13 13 N 1.46502 * 109.46812 * 300.00105 * 12 2 1 14 14 C 1.39006 * 119.99544 * 180.02562 * 13 12 2 15 15 C 1.39335 * 120.09481 * 359.97438 * 14 13 12 16 16 N 1.31919 * 119.88999 * 179.97438 * 15 14 13 17 17 C 1.32281 * 120.08492 * 359.97438 * 16 15 14 18 18 C 1.38151 * 120.19273 * 0.28233 * 17 16 15 19 19 N 1.32256 * 120.11104 * 359.42622 * 18 17 16 20 20 H 1.09000 * 109.46953 * 299.99899 * 1 2 3 21 21 H 1.08995 * 109.46968 * 60.00606 * 1 2 3 22 22 H 1.09006 * 109.46836 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46812 * 179.97438 * 3 2 1 24 24 H 1.09004 * 109.46855 * 299.99336 * 3 2 1 25 25 H 1.08994 * 109.47553 * 59.99915 * 3 2 1 26 26 H 0.97001 * 119.99552 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.46621 * 180.02562 * 12 2 1 28 28 H 1.09001 * 109.47044 * 59.99959 * 12 2 1 29 29 H 0.97002 * 120.00344 * 0.02562 * 13 12 2 30 30 H 1.08001 * 120.05648 * 359.96279 * 15 14 13 31 31 H 1.08002 * 119.90004 * 179.97438 * 17 16 15 32 32 H 1.08007 * 119.94682 * 179.70373 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 3.1456 -2.2878 -3.6037 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 6 2.0401 -0.7212 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8879 -0.5051 3.7079 15 6 2.6889 -1.6378 3.8381 16 7 3.0059 -2.0844 5.0382 17 6 2.5649 -1.4581 6.1167 18 6 1.7662 -0.3378 5.9917 19 7 1.4484 0.1200 4.7923 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9563 -0.8901 25 1 1.6766 1.9564 0.8899 26 1 0.7095 1.1616 -3.4844 27 1 3.1301 -0.7208 1.2495 28 1 1.6767 -1.7489 1.2493 29 1 0.9937 0.7579 2.3564 30 1 3.0494 -2.1494 2.9579 31 1 2.8260 -1.8265 7.0978 32 1 1.4044 0.1677 6.8749 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591175948.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:14 Heat of formation + Delta-G solvation = 43.355801 kcal Electronic energy + Delta-G solvation = -14823.327794 eV Core-core repulsion = 12397.865823 eV Total energy + Delta-G solvation = -2425.461971 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62886 -37.24434 -34.51153 -33.45681 -31.34220 -29.18114 -25.87844 -25.77886 -25.02720 -24.10316 -22.55868 -18.92736 -17.69598 -16.96269 -16.18021 -15.82053 -14.92090 -14.81180 -14.17153 -14.03784 -13.42164 -12.92199 -12.63547 -12.12337 -11.68462 -11.27461 -11.21816 -11.15818 -10.89413 -10.71220 -10.50361 -10.24734 -9.91089 -9.54107 -9.46539 -8.89081 -8.77536 -8.45674 -7.44354 -6.08591 -4.19905 1.25870 1.60268 3.22956 3.31875 3.34372 3.50074 4.10962 4.34120 4.67069 4.73542 4.89383 5.18430 5.42747 5.52090 5.77851 5.96913 6.09315 6.36133 6.54093 6.65258 6.79427 6.88992 6.93799 7.09889 7.29302 7.48925 7.62378 7.83677 7.87288 7.93778 8.06169 8.27433 8.35250 8.80532 9.46633 10.92836 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.055738 B = 0.006342 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.225576 B = 4413.860027 C = 4725.026913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.059 3.941 3 C -0.132 4.132 4 C -0.509 4.509 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.131 3.869 13 N -0.695 5.695 14 C 0.364 3.636 15 C -0.015 4.015 16 N -0.405 5.405 17 C -0.049 4.049 18 C 0.105 3.895 19 N -0.518 5.518 20 H 0.008 0.992 21 H 0.086 0.914 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.086 0.914 25 H 0.008 0.992 26 H 0.260 0.740 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.406 0.594 30 H 0.164 0.836 31 H 0.158 0.842 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.073 -1.538 10.591 10.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 C -0.190 4.190 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.008 3.992 13 N -0.325 5.325 14 C 0.122 3.878 15 C -0.186 4.186 16 N -0.119 5.119 17 C -0.210 4.210 18 C -0.057 4.057 19 N -0.242 5.242 20 H 0.027 0.973 21 H 0.105 0.895 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.105 0.895 25 H 0.027 0.973 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.244 0.756 30 H 0.181 0.819 31 H 0.175 0.825 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.067 -1.524 10.237 10.405 hybrid contribution 0.061 -0.089 -0.830 0.837 sum 1.128 -1.613 9.407 9.611 Atomic orbital electron populations 1.21840 0.97592 0.99254 1.00312 1.18332 0.92956 0.92841 0.90066 1.21838 0.98567 0.98273 1.00316 1.20978 1.31770 1.12214 0.89790 0.92300 1.24887 0.94770 0.94886 0.98937 1.69818 1.36453 1.22649 1.23263 0.86501 0.78651 0.79708 0.82936 1.19737 1.21024 1.21018 1.21950 0.97934 0.95889 0.83468 1.45190 1.53833 1.32133 1.01302 1.19599 0.90403 0.90489 0.87336 1.23103 1.01983 0.97036 0.96465 1.68150 1.17047 1.28208 0.98463 1.23128 1.02434 0.97321 0.98077 1.23344 0.93629 0.93908 0.94770 1.68012 1.25801 1.32282 0.98124 0.97311 0.89524 0.95387 0.95393 0.89514 0.97320 0.92949 0.92562 0.92556 0.75632 0.81877 0.82509 0.82177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 4 C -0.51 -12.73 8.01 -34.44 -0.28 -13.00 16 5 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -23.16 9.35 55.43 0.52 -22.65 16 8 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.13 2.49 3.73 -4.04 -0.02 2.48 16 13 N -0.70 -12.37 5.13 -60.30 -0.31 -12.68 16 14 C 0.36 6.25 7.67 -154.73 -1.19 5.06 16 15 C -0.02 -0.25 10.49 -17.11 -0.18 -0.43 16 16 N -0.41 -6.41 10.49 -12.88 -0.14 -6.55 16 17 C -0.05 -0.65 11.21 -17.39 -0.19 -0.84 16 18 C 0.10 1.38 11.21 -17.40 -0.20 1.18 16 19 N -0.52 -8.51 10.53 -12.24 -0.13 -8.64 16 20 H 0.01 0.16 6.86 -51.93 -0.36 -0.19 16 21 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 22 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 25 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 26 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 27 H 0.06 1.06 7.94 -51.93 -0.41 0.65 16 28 H 0.06 1.06 7.94 -51.93 -0.41 0.65 16 29 H 0.41 7.34 6.29 -40.82 -0.26 7.09 16 30 H 0.16 2.52 6.73 -52.49 -0.35 2.17 16 31 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.16 1.47 8.06 -52.48 -0.42 1.04 16 LS Contribution 263.71 15.07 3.97 3.97 Total: -1.00 -26.82 263.71 -6.73 -33.55 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -4.01 Total: 5.89 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -1.62 Total: -8.01 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.05 Total: -50.51 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -26.82 -6.73 -33.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591175948.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.902 kcal (2) G-P(sol) polarization free energy of solvation -26.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds