Wall clock time and date at job start Sun Mar 29 2020 22:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99758 * 2 1 4 4 H 1.48497 * 109.47126 * 180.02562 * 3 2 1 5 5 H 1.48512 * 109.47065 * 299.99631 * 3 2 1 6 6 H 1.48495 * 109.47458 * 59.99814 * 3 2 1 7 7 C 1.37871 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00418 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99946 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.46906 * 111.00071 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.41893 * 324.88694 * 11 10 9 13 13 C 1.53021 * 109.42607 * 205.00144 * 11 10 9 14 14 C 1.53380 * 109.72769 * 168.20419 * 13 11 10 15 15 C 1.50880 * 108.19812 * 50.54073 * 14 13 11 16 16 C 1.34569 * 128.33466 * 163.40406 * 15 14 13 17 17 N 1.35198 * 107.62166 * 180.02562 * 16 15 14 18 18 H 0.97006 * 126.00251 * 179.97438 * 17 16 15 19 19 N 1.40308 * 107.99249 * 359.97438 * 17 16 15 20 20 C 1.30134 * 108.12405 * 359.95876 * 19 17 16 21 21 C 1.50949 * 128.28513 * 180.21438 * 20 19 17 22 22 H 0.97000 * 120.00273 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47315 * 60.00490 * 9 7 2 24 24 H 1.08996 * 109.47653 * 300.00019 * 9 7 2 25 25 H 1.00897 * 111.00222 * 56.05059 * 10 9 7 26 26 H 1.08998 * 109.42562 * 288.28439 * 13 11 10 27 27 H 1.08999 * 109.42823 * 48.17836 * 13 11 10 28 28 H 1.09002 * 109.71689 * 170.21389 * 14 13 11 29 29 H 1.09002 * 109.72202 * 290.86687 * 14 13 11 30 30 H 1.08001 * 126.18785 * 0.05981 * 16 15 14 31 31 H 1.08998 * 109.71455 * 43.48053 * 21 20 19 32 32 H 1.09007 * 109.71253 * 282.83635 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2058 -3.6156 0.0027 11 6 1.5055 -4.9071 0.0032 12 1 0.5933 -4.8244 0.5942 13 6 2.4125 -5.9775 0.6141 14 6 1.5998 -7.2488 0.8898 15 6 0.8447 -7.6070 -0.3664 16 6 0.2618 -8.7774 -0.6848 17 7 -0.2957 -8.6374 -1.9084 18 1 -0.7845 -9.3204 -2.3939 19 7 -0.0433 -7.3307 -2.3528 20 6 0.6374 -6.7140 -1.4310 21 6 1.1442 -5.2922 -1.4361 22 1 -0.4850 0.8400 -0.0004 23 1 0.6242 -2.5575 -0.8880 24 1 0.6248 -2.5563 0.8919 25 1 2.8406 -3.5479 0.7840 26 1 3.2207 -6.2072 -0.0802 27 1 2.8322 -5.6066 1.5491 28 1 2.2718 -8.0634 1.1599 29 1 0.8964 -7.0668 1.7023 30 1 0.2424 -9.6673 -0.0731 31 1 0.3672 -4.6262 -1.8114 32 1 2.0288 -5.2195 -2.0689 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591753695.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:38 Heat of formation + Delta-G solvation = 60.672346 kcal Electronic energy + Delta-G solvation = -14626.910616 eV Core-core repulsion = 12202.199546 eV Total energy + Delta-G solvation = -2424.711070 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.27435 -37.17372 -33.80649 -32.16798 -31.83072 -29.24047 -28.19019 -26.12843 -23.58182 -21.47560 -20.83182 -20.75330 -18.50740 -17.48396 -16.34511 -15.22417 -14.72671 -14.65164 -14.26300 -13.72491 -13.34293 -13.07131 -12.60254 -12.31338 -12.11375 -11.65711 -11.39592 -11.23076 -10.91531 -10.84742 -10.54119 -10.30324 -10.06145 -9.69302 -9.17349 -9.08563 -8.44386 -8.30825 -7.26248 -5.98883 -4.00641 2.00351 2.91133 2.96106 3.34241 3.41470 3.46571 4.46243 4.62990 4.85200 5.09296 5.25090 5.37248 5.39973 5.57786 5.70864 5.84505 5.87730 5.93126 6.08377 6.26001 6.30432 6.41267 6.58351 6.69651 6.88655 7.32621 7.38155 7.47790 7.82869 7.85066 8.18124 8.45674 8.66537 9.09367 9.64298 11.12292 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.056566 B = 0.005627 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.880090 B = 4974.778540 C = 5250.188645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.686 5.686 11 C 0.092 3.908 12 H 0.039 0.961 13 C -0.117 4.117 14 C -0.038 4.038 15 C -0.234 4.234 16 C 0.052 3.948 17 N -0.492 5.492 18 H 0.435 0.565 19 N -0.293 5.293 20 C 0.096 3.904 21 C -0.028 4.028 22 H 0.260 0.740 23 H 0.029 0.971 24 H -0.014 1.014 25 H 0.332 0.668 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.172 0.828 31 H 0.082 0.918 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 -17.255 1.028 17.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.318 5.318 11 C -0.019 4.019 12 H 0.057 0.943 13 C -0.155 4.155 14 C -0.077 4.077 15 C -0.246 4.246 16 C -0.094 4.094 17 N -0.201 5.201 18 H 0.278 0.722 19 N -0.115 5.115 20 C -0.073 4.073 21 C -0.068 4.068 22 H 0.070 0.930 23 H 0.047 0.953 24 H 0.004 0.996 25 H 0.149 0.851 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.189 0.811 31 H 0.100 0.900 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.854 -17.020 -0.791 17.059 hybrid contribution -0.029 0.331 1.400 1.439 sum 0.825 -16.688 0.609 16.720 Atomic orbital electron populations 1.69976 1.06090 1.26624 1.51092 1.24990 0.94850 0.99356 0.95424 0.86443 0.80081 0.83433 0.77450 1.19643 1.21043 1.21164 1.21241 0.93569 0.90265 1.50053 0.91873 1.19619 0.90589 0.87348 0.95827 1.60599 1.21165 1.00837 1.49150 1.21366 0.95879 0.90594 0.94042 0.94335 1.21748 0.98346 0.94549 1.00861 1.19979 0.97114 0.97422 0.93181 1.20201 1.10247 0.93834 1.00290 1.21989 0.98588 0.99894 0.88881 1.46328 1.46813 1.11874 1.15040 0.72166 1.77054 1.21395 0.90172 1.22913 1.22631 0.95617 0.97551 0.91509 1.20144 1.01253 0.86824 0.98583 0.93010 0.95288 0.99585 0.85069 0.91286 0.91618 0.91465 0.91458 0.81071 0.89988 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.58 9.32 -34.44 -0.32 -14.90 16 8 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 9 C 0.19 5.07 5.24 -4.97 -0.03 5.05 16 10 N -0.69 -14.57 6.30 -107.80 -0.68 -15.25 16 11 C 0.09 1.66 2.43 -67.53 -0.16 1.49 16 12 H 0.04 0.75 7.76 -51.93 -0.40 0.35 16 13 C -0.12 -1.65 5.28 -26.52 -0.14 -1.79 16 14 C -0.04 -0.46 6.28 -27.60 -0.17 -0.64 16 15 C -0.23 -3.25 5.89 -104.98 -0.62 -3.87 16 16 C 0.05 0.58 11.95 -17.37 -0.21 0.37 16 17 N -0.49 -5.89 7.37 30.35 0.22 -5.66 16 18 H 0.44 3.53 8.96 -182.43 -1.64 1.90 16 19 N -0.29 -4.81 12.68 33.75 0.43 -4.38 16 20 C 0.10 1.60 7.10 -82.34 -0.58 1.01 16 21 C -0.03 -0.51 5.74 -27.60 -0.16 -0.66 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.03 0.82 7.63 -51.93 -0.40 0.43 16 24 H -0.01 -0.38 8.05 -51.93 -0.42 -0.80 16 25 H 0.33 6.63 8.16 -39.29 -0.32 6.31 16 26 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 27 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.08 1.61 7.72 -51.93 -0.40 1.21 16 32 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 268.02 15.07 4.04 4.04 Total: -1.00 -32.52 268.02 -8.40 -40.92 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.64 Total: 2.40 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -2.49 Total: -12.46 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.71 Total: -51.70 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.52 -8.40 -40.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591753695.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.593 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds