Wall clock time and date at job start Sun Mar 29 2020 22:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99758 * 2 1 4 4 H 1.48497 * 109.47126 * 180.02562 * 3 2 1 5 5 H 1.48512 * 109.47065 * 299.99631 * 3 2 1 6 6 H 1.48495 * 109.47458 * 59.99814 * 3 2 1 7 7 C 1.37871 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00418 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99946 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.46906 * 111.00071 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.41893 * 324.88694 * 11 10 9 13 13 C 1.53021 * 109.42607 * 205.00144 * 11 10 9 14 14 C 1.53380 * 109.72769 * 168.20419 * 13 11 10 15 15 C 1.50880 * 108.19812 * 50.54073 * 14 13 11 16 16 C 1.34569 * 128.33466 * 163.40406 * 15 14 13 17 17 N 1.35198 * 107.62166 * 180.02562 * 16 15 14 18 18 H 0.97006 * 126.00251 * 179.97438 * 17 16 15 19 19 N 1.40308 * 107.99249 * 359.97438 * 17 16 15 20 20 C 1.30134 * 108.12405 * 359.95876 * 19 17 16 21 21 C 1.50949 * 128.28513 * 180.21438 * 20 19 17 22 22 H 0.97000 * 120.00273 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47315 * 60.00490 * 9 7 2 24 24 H 1.08996 * 109.47653 * 300.00019 * 9 7 2 25 25 H 1.00897 * 111.00222 * 56.05059 * 10 9 7 26 26 H 1.08998 * 109.42562 * 288.28439 * 13 11 10 27 27 H 1.08999 * 109.42823 * 48.17836 * 13 11 10 28 28 H 1.09002 * 109.71689 * 170.21389 * 14 13 11 29 29 H 1.09002 * 109.72202 * 290.86687 * 14 13 11 30 30 H 1.08001 * 126.18785 * 0.05981 * 16 15 14 31 31 H 1.08998 * 109.71455 * 43.48053 * 21 20 19 32 32 H 1.09007 * 109.71253 * 282.83635 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2058 -3.6156 0.0027 11 6 1.5055 -4.9071 0.0032 12 1 0.5933 -4.8244 0.5942 13 6 2.4125 -5.9775 0.6141 14 6 1.5998 -7.2488 0.8898 15 6 0.8447 -7.6070 -0.3664 16 6 0.2618 -8.7774 -0.6848 17 7 -0.2957 -8.6374 -1.9084 18 1 -0.7845 -9.3204 -2.3939 19 7 -0.0433 -7.3307 -2.3528 20 6 0.6374 -6.7140 -1.4310 21 6 1.1442 -5.2922 -1.4361 22 1 -0.4850 0.8400 -0.0004 23 1 0.6242 -2.5575 -0.8880 24 1 0.6248 -2.5563 0.8919 25 1 2.8406 -3.5479 0.7840 26 1 3.2207 -6.2072 -0.0802 27 1 2.8322 -5.6066 1.5491 28 1 2.2718 -8.0634 1.1599 29 1 0.8964 -7.0668 1.7023 30 1 0.2424 -9.6673 -0.0731 31 1 0.3672 -4.6262 -1.8114 32 1 2.0288 -5.2195 -2.0689 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591753695.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:38 Heat of formation + Delta-G solvation = 36.595358 kcal Electronic energy + Delta-G solvation = -14627.954672 eV Core-core repulsion = 12202.199546 eV Total energy + Delta-G solvation = -2425.755126 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.34297 -38.62289 -35.59289 -33.96048 -33.02929 -30.68377 -29.39146 -28.05030 -25.04276 -23.21758 -22.22315 -21.88371 -19.75487 -18.57661 -18.36179 -16.67967 -16.62677 -15.98947 -15.54936 -15.24012 -14.55652 -14.47499 -14.23658 -13.84592 -13.55548 -13.39128 -12.92161 -12.76154 -12.63569 -12.29408 -12.05900 -11.97356 -11.64966 -11.19604 -11.08108 -10.65797 -10.32768 -9.30446 -9.11286 -8.20491 -6.31858 1.00368 1.42722 1.43928 1.57947 1.79153 2.03985 2.42153 3.13043 3.37679 3.72432 3.92047 4.08880 4.26600 4.37907 4.50959 4.59799 4.72783 4.74650 4.94400 5.02319 5.07683 5.16721 5.23382 5.26318 5.37564 5.46325 5.65779 5.72179 6.05407 6.49080 6.55423 6.75341 6.78220 6.94582 7.39544 8.91623 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.056566 B = 0.005627 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.880090 B = 4974.778540 C = 5250.188645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.001 4.001 3 Si 0.975 3.025 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.533 4.533 8 H 0.068 0.932 9 C 0.209 3.791 10 N -0.683 5.683 11 C 0.095 3.905 12 H 0.019 0.981 13 C -0.109 4.109 14 C -0.030 4.030 15 C -0.260 4.260 16 C 0.081 3.919 17 N -0.478 5.478 18 H 0.452 0.548 19 N -0.335 5.335 20 C 0.070 3.930 21 C -0.023 4.023 22 H 0.264 0.736 23 H -0.004 1.004 24 H -0.041 1.041 25 H 0.341 0.659 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.226 0.774 31 H 0.046 0.954 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.691 -19.025 2.040 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.199 4.199 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.571 4.571 8 H 0.086 0.914 9 C 0.082 3.918 10 N -0.315 5.315 11 C -0.016 4.016 12 H 0.037 0.963 13 C -0.147 4.147 14 C -0.069 4.069 15 C -0.272 4.272 16 C -0.066 4.066 17 N -0.188 5.188 18 H 0.299 0.701 19 N -0.159 5.159 20 C -0.097 4.097 21 C -0.063 4.063 22 H 0.073 0.927 23 H 0.014 0.986 24 H -0.023 1.023 25 H 0.160 0.840 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.242 0.758 31 H 0.065 0.935 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.098 -18.816 0.211 18.934 hybrid contribution -0.483 0.767 1.043 1.382 sum 1.615 -18.049 1.254 18.164 Atomic orbital electron populations 1.70116 1.07966 1.27899 1.51807 1.25993 0.95755 1.03546 0.94624 0.85247 0.79029 0.78132 0.77645 1.18367 1.20631 1.20255 1.21610 0.93949 0.91323 1.50226 0.91390 1.19226 0.90625 0.89053 0.92934 1.60457 1.20355 1.01026 1.49616 1.21418 0.95837 0.90234 0.94121 0.96344 1.21693 0.97753 0.94232 1.01039 1.19985 0.97304 0.97062 0.92501 1.20492 1.11991 0.94323 1.00374 1.22731 0.95427 1.00424 0.87982 1.46369 1.46125 1.10741 1.15580 0.70117 1.76944 1.22469 0.92452 1.24036 1.22416 0.96985 0.97008 0.93337 1.19913 0.99944 0.88138 0.98296 0.92696 0.98602 1.02335 0.84020 0.90986 0.90277 0.87971 0.91080 0.75754 0.93537 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.21 13.29 21.44 0.28 -57.92 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.98 45.01 29.54 68.60 2.03 47.04 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.53 -31.00 9.32 25.60 0.24 -30.76 16 8 H 0.07 3.81 7.81 -2.91 -0.02 3.78 16 9 C 0.21 11.61 5.24 85.56 0.45 12.06 16 10 N -0.68 -29.99 6.30 -494.96 -3.12 -33.11 16 11 C 0.09 3.51 2.43 45.03 0.11 3.62 16 12 H 0.02 0.76 7.76 -2.39 -0.02 0.74 16 13 C -0.11 -2.93 5.28 30.73 0.16 -2.77 16 14 C -0.03 -0.64 6.28 30.03 0.19 -0.45 16 15 C -0.26 -6.65 5.89 -20.10 -0.12 -6.76 16 16 C 0.08 1.47 11.95 83.33 1.00 2.47 16 17 N -0.48 -10.28 7.37 -57.89 -0.43 -10.71 16 18 H 0.45 6.09 8.96 -213.18 -1.91 4.18 16 19 N -0.34 -10.99 12.68 -47.13 -0.60 -11.59 16 20 C 0.07 2.36 7.10 43.44 0.31 2.67 16 21 C -0.02 -0.87 5.74 30.03 0.17 -0.70 16 22 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 23 H 0.00 -0.25 7.63 -2.39 -0.02 -0.27 16 24 H -0.04 -2.45 8.05 -2.39 -0.02 -2.46 16 25 H 0.34 13.75 8.16 -89.70 -0.73 13.02 16 26 H 0.07 1.91 8.10 -2.39 -0.02 1.89 16 27 H 0.08 1.91 7.85 -2.39 -0.02 1.89 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.23 1.59 8.06 -2.91 -0.02 1.56 16 31 H 0.05 2.03 7.72 -2.39 -0.02 2.01 16 32 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 Total: -1.00 -73.47 268.02 -0.37 -73.84 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -1.51 Total: 12.72 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 2.97 Total: -20.26 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -3.86 Total: -113.33 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -73.47 -0.37 -73.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591753695.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.436 kcal (2) G-P(sol) polarization free energy of solvation -73.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds