Wall clock time and date at job start Sun Mar 29 2020 22:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99783 * 2 1 4 4 H 1.48499 * 109.47090 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47424 * 300.00325 * 3 2 1 6 6 H 1.48502 * 109.47283 * 60.00529 * 3 2 1 7 7 C 1.37872 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00269 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00091 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47531 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00415 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.42433 * 35.00100 * 11 10 9 13 13 C 1.53022 * 109.37984 * 154.85840 * 11 10 9 14 14 C 1.53374 * 109.73391 * 191.75855 * 13 11 10 15 15 C 1.50879 * 108.19701 * 309.46232 * 14 13 11 16 16 C 1.34573 * 128.33075 * 196.68791 * 15 14 13 17 17 N 1.35197 * 107.61876 * 179.83101 * 16 15 14 18 18 H 0.96998 * 126.00144 * 180.02562 * 17 16 15 19 19 N 1.40312 * 107.99326 * 0.03295 * 17 16 15 20 20 C 1.30129 * 108.12344 * 0.03177 * 19 17 16 21 21 C 1.50943 * 128.28512 * 179.87200 * 20 19 17 22 22 H 0.96997 * 119.99899 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46757 * 60.00285 * 9 7 2 24 24 H 1.08995 * 109.47289 * 300.00782 * 9 7 2 25 25 H 1.00900 * 110.99721 * 56.04435 * 10 9 7 26 26 H 1.09002 * 109.42693 * 311.84542 * 13 11 10 27 27 H 1.09004 * 109.42942 * 71.67989 * 13 11 10 28 28 H 1.08999 * 109.73484 * 189.77743 * 14 13 11 29 29 H 1.09004 * 109.74035 * 69.14533 * 14 13 11 30 30 H 1.07998 * 126.18590 * 359.84809 * 16 15 14 31 31 H 1.08996 * 109.71759 * 77.05941 * 21 20 19 32 32 H 1.09001 * 109.75233 * 316.43740 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 1 0.5926 -4.8241 -0.5911 13 6 2.4123 -5.9761 -0.6144 14 6 1.6005 -7.2480 -0.8897 15 6 0.8480 -7.6080 0.3675 16 6 0.2683 -8.7798 0.6866 17 7 -0.2853 -8.6421 1.9123 18 1 -0.7711 -9.3264 2.3987 19 7 -0.0338 -7.3353 2.3572 20 6 0.6426 -6.7165 1.4337 21 6 1.1484 -5.2943 1.4393 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5566 -0.8904 24 1 0.6247 -2.5570 0.8896 25 1 2.8405 -3.5486 0.7808 26 1 2.8309 -5.6036 -1.5494 27 1 3.2220 -6.2057 0.0783 28 1 2.2726 -8.0619 -1.1618 29 1 0.8956 -7.0665 -1.7010 30 1 0.2490 -9.6692 0.0744 31 1 2.0343 -5.2216 2.0700 32 1 0.3723 -4.6288 1.8174 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591753696.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:41 Heat of formation + Delta-G solvation = 59.869731 kcal Electronic energy + Delta-G solvation = -14632.259634 eV Core-core repulsion = 12207.513760 eV Total energy + Delta-G solvation = -2424.745874 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.29985 -37.20531 -33.82216 -32.23103 -31.77856 -29.23757 -28.15913 -26.02197 -23.58881 -21.56117 -20.92490 -20.68161 -18.72875 -17.48306 -16.31943 -15.06159 -14.75248 -14.66756 -14.10018 -13.69461 -13.48330 -13.16084 -12.70979 -12.39527 -12.08734 -11.53657 -11.36561 -11.20421 -10.93413 -10.74810 -10.57346 -10.31391 -10.05151 -9.79211 -9.23282 -9.09628 -8.45956 -8.31609 -7.26037 -5.99387 -4.01143 1.98033 2.87972 2.93588 3.34046 3.41250 3.46362 4.46210 4.67814 4.83126 5.10520 5.24729 5.36690 5.39493 5.60799 5.69099 5.83492 5.85859 5.91660 6.10184 6.18836 6.29421 6.46859 6.61250 6.70999 6.82964 7.32104 7.35469 7.48703 7.80402 7.83254 8.17228 8.43572 8.66002 9.08762 9.63795 11.11744 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.056815 B = 0.005621 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.706217 B = 4979.903084 C = 5246.160278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.682 5.682 11 C 0.093 3.907 12 H 0.075 0.925 13 C -0.105 4.105 14 C -0.040 4.040 15 C -0.231 4.231 16 C 0.051 3.949 17 N -0.492 5.492 18 H 0.435 0.565 19 N -0.295 5.295 20 C 0.096 3.904 21 C -0.070 4.070 22 H 0.260 0.740 23 H 0.028 0.972 24 H -0.012 1.012 25 H 0.330 0.670 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.173 0.827 31 H 0.081 0.919 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.367 -17.174 0.533 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.065 3.935 10 N -0.311 5.311 11 C -0.019 4.019 12 H 0.093 0.907 13 C -0.143 4.143 14 C -0.079 4.079 15 C -0.242 4.242 16 C -0.094 4.094 17 N -0.200 5.200 18 H 0.278 0.722 19 N -0.117 5.117 20 C -0.073 4.073 21 C -0.111 4.111 22 H 0.070 0.930 23 H 0.046 0.954 24 H 0.006 0.994 25 H 0.147 0.853 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.190 0.810 31 H 0.100 0.900 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.777 -16.923 0.968 16.969 hybrid contribution -0.046 0.314 0.476 0.572 sum 0.730 -16.609 1.444 16.688 Atomic orbital electron populations 1.69975 1.06087 1.26630 1.51074 1.24988 0.94850 0.99356 0.95408 0.86444 0.80086 0.83430 0.77453 1.19642 1.21050 1.21152 1.21241 0.93571 0.90280 1.50084 0.91888 1.19613 0.90657 0.87347 0.95868 1.60819 1.20653 1.00882 1.48705 1.21554 0.97004 0.90826 0.92502 0.90723 1.21562 0.97688 0.93424 1.01654 1.20023 0.97241 0.97674 0.92986 1.20247 1.10030 0.93664 1.00293 1.22013 0.98671 0.99960 0.88787 1.46315 1.47019 1.11765 1.14939 0.72173 1.77045 1.21433 0.90227 1.22993 1.22492 0.95931 0.97247 0.91654 1.21070 1.01185 0.88236 1.00577 0.93007 0.95406 0.99380 0.85340 0.90579 0.92414 0.91537 0.91310 0.81009 0.90037 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.55 9.32 -34.44 -0.32 -14.87 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.19 5.01 5.24 -4.98 -0.03 4.98 16 10 N -0.68 -14.37 6.23 -107.78 -0.67 -15.04 16 11 C 0.09 1.64 2.41 -67.51 -0.16 1.48 16 12 H 0.07 1.44 7.76 -51.93 -0.40 1.03 16 13 C -0.11 -1.53 5.47 -26.53 -0.15 -1.67 16 14 C -0.04 -0.50 6.28 -27.60 -0.17 -0.67 16 15 C -0.23 -3.18 5.89 -104.98 -0.62 -3.80 16 16 C 0.05 0.56 11.95 -17.37 -0.21 0.35 16 17 N -0.49 -5.83 7.37 30.35 0.22 -5.60 16 18 H 0.44 3.50 8.96 -182.44 -1.64 1.86 16 19 N -0.29 -4.76 12.68 33.75 0.43 -4.34 16 20 C 0.10 1.56 7.10 -82.35 -0.58 0.98 16 21 C -0.07 -1.19 5.57 -27.57 -0.15 -1.34 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.03 0.79 8.05 -51.93 -0.42 0.37 16 24 H -0.01 -0.32 7.65 -51.93 -0.40 -0.72 16 25 H 0.33 6.63 8.36 -39.29 -0.33 6.30 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.08 1.31 7.97 -51.93 -0.41 0.90 16 32 H 0.08 1.55 7.73 -51.93 -0.40 1.15 16 LS Contribution 268.29 15.07 4.04 4.04 Total: -1.00 -32.32 268.29 -8.40 -40.72 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.65 Total: 2.84 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.49 Total: -13.07 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.72 Total: -51.31 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.32 -8.40 -40.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591753696.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.592 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds