Wall clock time and date at job start Sun Mar 29 2020 22:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99783 * 2 1 4 4 H 1.48499 * 109.47090 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47424 * 300.00325 * 3 2 1 6 6 H 1.48502 * 109.47283 * 60.00529 * 3 2 1 7 7 C 1.37872 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00269 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00091 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47531 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00415 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.42433 * 35.00100 * 11 10 9 13 13 C 1.53022 * 109.37984 * 154.85840 * 11 10 9 14 14 C 1.53374 * 109.73391 * 191.75855 * 13 11 10 15 15 C 1.50879 * 108.19701 * 309.46232 * 14 13 11 16 16 C 1.34573 * 128.33075 * 196.68791 * 15 14 13 17 17 N 1.35197 * 107.61876 * 179.83101 * 16 15 14 18 18 H 0.96998 * 126.00144 * 180.02562 * 17 16 15 19 19 N 1.40312 * 107.99326 * 0.03295 * 17 16 15 20 20 C 1.30129 * 108.12344 * 0.03177 * 19 17 16 21 21 C 1.50943 * 128.28512 * 179.87200 * 20 19 17 22 22 H 0.96997 * 119.99899 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46757 * 60.00285 * 9 7 2 24 24 H 1.08995 * 109.47289 * 300.00782 * 9 7 2 25 25 H 1.00900 * 110.99721 * 56.04435 * 10 9 7 26 26 H 1.09002 * 109.42693 * 311.84542 * 13 11 10 27 27 H 1.09004 * 109.42942 * 71.67989 * 13 11 10 28 28 H 1.08999 * 109.73484 * 189.77743 * 14 13 11 29 29 H 1.09004 * 109.74035 * 69.14533 * 14 13 11 30 30 H 1.07998 * 126.18590 * 359.84809 * 16 15 14 31 31 H 1.08996 * 109.71759 * 77.05941 * 21 20 19 32 32 H 1.09001 * 109.75233 * 316.43740 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 1 0.5926 -4.8241 -0.5911 13 6 2.4123 -5.9761 -0.6144 14 6 1.6005 -7.2480 -0.8897 15 6 0.8480 -7.6080 0.3675 16 6 0.2683 -8.7798 0.6866 17 7 -0.2853 -8.6421 1.9123 18 1 -0.7711 -9.3264 2.3987 19 7 -0.0338 -7.3353 2.3572 20 6 0.6426 -6.7165 1.4337 21 6 1.1484 -5.2943 1.4393 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5566 -0.8904 24 1 0.6247 -2.5570 0.8896 25 1 2.8405 -3.5486 0.7808 26 1 2.8309 -5.6036 -1.5494 27 1 3.2220 -6.2057 0.0783 28 1 2.2726 -8.0619 -1.1618 29 1 0.8956 -7.0665 -1.7010 30 1 0.2490 -9.6692 0.0744 31 1 2.0343 -5.2216 2.0700 32 1 0.3723 -4.6288 1.8174 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591753696.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:41 Heat of formation + Delta-G solvation = 36.145893 kcal Electronic energy + Delta-G solvation = -14633.288377 eV Core-core repulsion = 12207.513760 eV Total energy + Delta-G solvation = -2425.774616 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.35581 -38.65441 -35.58582 -33.99412 -32.98379 -30.67439 -29.36635 -27.92446 -24.99111 -23.40673 -22.18419 -21.86963 -19.96197 -18.53390 -18.36260 -16.73852 -16.18411 -16.10546 -15.60266 -15.05522 -14.87296 -14.37470 -14.23617 -13.87510 -13.64672 -13.36647 -12.82912 -12.74776 -12.65152 -12.24935 -12.09834 -11.94408 -11.60956 -11.27955 -11.07385 -10.65910 -10.35470 -9.31565 -9.08122 -8.20267 -6.31434 0.98984 1.43097 1.43740 1.57946 1.78025 2.03250 2.42306 3.13300 3.49941 3.63620 3.86797 4.02035 4.28015 4.40438 4.53084 4.56389 4.69830 4.73836 4.91691 5.01476 5.04641 5.17906 5.27475 5.36761 5.44866 5.47985 5.63769 5.73772 6.05603 6.47586 6.54397 6.75053 6.76250 6.93344 7.39781 8.91730 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.056815 B = 0.005621 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.706217 B = 4979.903084 C = 5246.160278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.001 4.001 3 Si 0.974 3.026 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.533 4.533 8 H 0.067 0.933 9 C 0.208 3.792 10 N -0.677 5.677 11 C 0.096 3.904 12 H 0.052 0.948 13 C -0.097 4.097 14 C -0.031 4.031 15 C -0.258 4.258 16 C 0.080 3.920 17 N -0.478 5.478 18 H 0.452 0.548 19 N -0.336 5.336 20 C 0.071 3.929 21 C -0.062 4.062 22 H 0.264 0.736 23 H -0.003 1.003 24 H -0.040 1.040 25 H 0.336 0.664 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.225 0.775 31 H 0.086 0.914 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.539 -18.904 -0.052 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.571 4.571 8 H 0.085 0.915 9 C 0.080 3.920 10 N -0.306 5.306 11 C -0.016 4.016 12 H 0.070 0.930 13 C -0.135 4.135 14 C -0.070 4.070 15 C -0.269 4.269 16 C -0.067 4.067 17 N -0.188 5.188 18 H 0.299 0.701 19 N -0.160 5.160 20 C -0.097 4.097 21 C -0.103 4.103 22 H 0.073 0.927 23 H 0.015 0.985 24 H -0.022 1.022 25 H 0.154 0.846 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.242 0.758 31 H 0.104 0.896 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.954 -18.683 0.399 18.789 hybrid contribution -0.479 0.733 0.685 1.112 sum 1.474 -17.950 1.084 18.043 Atomic orbital electron populations 1.70113 1.07929 1.27882 1.51807 1.25979 0.95751 1.03497 0.94639 0.85260 0.79030 0.78201 0.77641 1.18411 1.20416 1.20486 1.21611 0.93931 0.91381 1.50223 0.91471 1.19228 0.90695 0.89001 0.93055 1.60742 1.19819 1.01059 1.49030 1.21592 0.96787 0.90188 0.92989 0.92994 1.21482 0.97403 0.93343 1.01268 1.19999 0.97384 0.97159 0.92462 1.20496 1.11829 0.94266 1.00307 1.22735 0.95537 1.00463 0.87941 1.46359 1.46323 1.10705 1.15438 0.70141 1.76939 1.22508 0.92420 1.24093 1.22351 0.97168 0.96889 0.93302 1.20807 1.00443 0.89221 0.99817 0.92704 0.98452 1.02184 0.84616 0.90700 0.91638 0.88201 0.91123 0.75829 0.89571 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.94 13.29 21.45 0.28 -57.65 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.53 -30.92 9.32 25.60 0.24 -30.68 16 8 H 0.07 3.76 7.81 -2.91 -0.02 3.73 16 9 C 0.21 11.44 5.24 85.56 0.45 11.88 16 10 N -0.68 -29.53 6.23 -494.90 -3.08 -32.62 16 11 C 0.10 3.50 2.41 45.05 0.11 3.60 16 12 H 0.05 2.12 7.76 -2.39 -0.02 2.10 16 13 C -0.10 -2.71 5.47 30.73 0.17 -2.54 16 14 C -0.03 -0.69 6.28 30.03 0.19 -0.51 16 15 C -0.26 -6.52 5.89 -20.10 -0.12 -6.63 16 16 C 0.08 1.44 11.95 83.33 1.00 2.44 16 17 N -0.48 -10.10 7.37 -57.89 -0.43 -10.53 16 18 H 0.45 5.97 8.96 -213.19 -1.91 4.06 16 19 N -0.34 -10.73 12.68 -47.14 -0.60 -11.33 16 20 C 0.07 2.30 7.10 43.44 0.31 2.61 16 21 C -0.06 -2.21 5.57 30.05 0.17 -2.05 16 22 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 23 H 0.00 -0.16 8.05 -2.38 -0.02 -0.18 16 24 H -0.04 -2.35 7.65 -2.39 -0.02 -2.37 16 25 H 0.34 13.86 8.36 -89.69 -0.75 13.11 16 26 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.06 1.73 8.10 -2.38 -0.02 1.72 16 28 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.23 1.61 8.06 -2.91 -0.02 1.58 16 31 H 0.09 2.90 7.97 -2.39 -0.02 2.88 16 32 H 0.05 2.07 7.73 -2.39 -0.02 2.05 16 Total: -1.00 -72.25 268.29 -0.36 -72.61 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -1.53 Total: 14.02 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 2.97 Total: -21.45 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -3.82 Total: -112.14 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -72.25 -0.36 -72.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591753696.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.754 kcal (2) G-P(sol) polarization free energy of solvation -72.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds